CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 226

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3226D226DD1044DsyngaCgaT4115411513395-3397
ORF1ab/nsp3226D226YD1044YnonsynGacTac88788713395-3397
ORF1ab/nsp3226D226ND1044NnonsynGacAac27827813395-3397
ORF1ab/nsp3226D226GD1044GnonsyngAcgGc808013395-3397
ORF1ab/nsp3226D226ED1044EnonsyngaCgaA70680.9714293395-3397
ORF1ab/nsp3226D226ED1044EnonsyngaCgaG7020.02857143395-3397
ORF1ab/nsp3226D226AD1044AnonsyngAcgCc515113395-3397
ORF1ab/nsp3226D226delD1044deldelGAC---252513395-3397
ORF1ab/nsp3226D226HD1044HnonsynGacCac161613395-3397
ORF1ab/nsp3226D226del1D1044del1delgAcg-c420.53395-3397
ORF1ab/nsp3226D226del1D1044del1delgACg-T410.253395-3397
ORF1ab/nsp3226D226del1D1044del1delGac-ac410.253395-3397
ORF1ab/nsp3226D226VD1044VnonsyngAcgTc2213395-3397
ORF1ab/nsp3226D226SD1044SnonsynGAcAGc1113395-3397
ORF1ab/nsp3226D226ID1044InonsynGACATT1113395-3397

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3226D226DgaCgaT41154115All0.000787
ORF1ab/nsp3226D226DgaCgaT22402240B.1.1.70.002005
ORF1ab/nsp3226D226DgaCgaT11111111B.1.2210.078917
ORF1ab/nsp3226D226YGacTac887887All0.00017
ORF1ab/nsp3226D226NGacAac278278All0.000053
ORF1ab/nsp3226D226YGacTac219219AY.40.000341
ORF1ab/nsp3226D226DgaCgaT172172B.1.5820.084396
ORF1ab/nsp3226D226NGacAac103103B.1.1.70.000092
ORF1ab/nsp3226D226YGacTac9999AY.1030.000615
ORF1ab/nsp3226D226YGacTac8787AY.430.000385
ORF1ab/nsp3226D226YGacTac8787B.1.1.70.000078
ORF1ab/nsp3226D226GgAcgGc8080All0.000015
ORF1ab/nsp3226D226YGacTac7373AY.200.002837
ORF1ab/nsp3226D226DgaCgaT7171B.10.00065
ORF1ab/nsp3226D226YGacTac7171B.1.617.20.000267
ORF1ab/nsp3226D226EgaCgaA6870All0.000013
ORF1ab/nsp3226D226EgaCgaG270All0
ORF1ab/nsp3226D226DgaCgaT5858B.1.5710.563107
ORF1ab/nsp3226D226AgAcgCc5151All0.00001
ORF1ab/nsp3226D226NGacAac5050AY.250.000301
ORF1ab/nsp3226D226DgaCgaT4848AY.440.000292
ORF1ab/nsp3226D226YGacTac4242B.1.1770.000553
ORF1ab/nsp3226D226DgaCgaT4141AY.40.000064
ORF1ab/nsp3226D226AgAcgCc3939B.1.1.70.000035
ORF1ab/nsp3226D226EgaCgaA3434B.1.1.70.00003
ORF1ab/nsp3226D226DgaCgaT2828AY.430.000124
ORF1ab/nsp3226D226EgaCgaA2626AY.1030.000161
ORF1ab/nsp3226D226NGacAac2626B.1.177.810.004922
ORF1ab/nsp3226D226delGAC---2525All0.000005
ORF1ab/nsp3226D226NGacAac2323AY.1030.000143
ORF1ab/nsp3226D226DgaCgaT2222B.1.2430.001531
ORF1ab/nsp3226D226YGacTac2121AY.1050.013505
ORF1ab/nsp3226D226DgaCgaT2121AY.50.000434
ORF1ab/nsp3226D226DgaCgaT2020AY.330.001336
ORF1ab/nsp3226D226GgAcgGc1919AY.50.000392
ORF1ab/nsp3226D226DgaCgaT1919B.1.1.2910.014105
ORF1ab/nsp3226D226YGacTac1919B.1.20.000167
ORF1ab/nsp3226D226YGacTac1717AY.30.000169
ORF1ab/nsp3226D226DgaCgaT1717B.1.20.00015
ORF1ab/nsp3226D226DgaCgaT1717B.1.2100.036247
ORF1ab/nsp3226D226DgaCgaT1717C.36.30.009643
ORF1ab/nsp3226D226HGacCac1616All0.000003
ORF1ab/nsp3226D226DgaCgaT1515B.1.6210.001328
ORF1ab/nsp3226D226NGacAac1313AY.440.000079
ORF1ab/nsp3226D226DgaCgaT1212AY.30.000119
ORF1ab/nsp3226D226YGacTac1111AY.46.40.00181
ORF1ab/nsp3226D226DgaCgaT1111B.1.617.20.000041
ORF1ab/nsp3226D226YGacTac1010AY.1000.00046
ORF1ab/nsp3226D226YGacTac1010AY.1190.000353
ORF1ab/nsp3226D226NGacAac1010AY.40.000016
ORF1ab/nsp3226D226DgaCgaT1010B.1.4270.000505
ORF1ab/nsp3226D226DgaCgaT99AY.1030.000056
ORF1ab/nsp3226D226DgaCgaT99AY.260.000255
ORF1ab/nsp3226D226DgaCgaT99AY.60.00037
ORF1ab/nsp3226D226DgaCgaT99B.1.10.000163
ORF1ab/nsp3226D226YGacTac99B.1.4690.032491
ORF1ab/nsp3226D226YGacTac99B.1.621.10.004552
ORF1ab/nsp3226D226YGacTac88AY.930.002185
ORF1ab/nsp3226D226GgAcgGc88B.1.20.00007
ORF1ab/nsp3226D226NGacAac77AY.3.10.000597
ORF1ab/nsp3226D226YGacTac77AY.4.2.10.001043
ORF1ab/nsp3226D226DgaCgaT66AY.420.000241
ORF1ab/nsp3226D226DgaCgaT66B.1.4090.004687
ORF1ab/nsp3226D226DgaCgaT66B.1.5960.000523
ORF1ab/nsp3226D226GgAcgGc55AY.40.000008
ORF1ab/nsp3226D226YGacTac55AY.440.00003
ORF1ab/nsp3226D226NGacAac55AY.50.000103
ORF1ab/nsp3226D226YGacTac55B.10.000046
ORF1ab/nsp3226D226YGacTac55B.1.1.3180.001509
ORF1ab/nsp3226D226DgaCgaT55B.1.1770.000066
ORF1ab/nsp3226D226NGacAac55B.1.20.000044
ORF1ab/nsp3226D226DgaCgaT55B.1.4290.000118
ORF1ab/nsp3226D226DgaCgaT55B.1.466.20.001956
ORF1ab/nsp3226D226del1gAcg-c24All0
ORF1ab/nsp3226D226del1Gac-ac14All0
ORF1ab/nsp3226D226del1gACg-T14All0
ORF1ab/nsp3226D226GgAcgGc44AY.1030.000025
ORF1ab/nsp3226D226DgaCgaT44AY.250.000024
ORF1ab/nsp3226D226HGacCac44AY.40.000006
ORF1ab/nsp3226D226GgAcgGc44B.10.000037
ORF1ab/nsp3226D226GgAcgGc44B.1.1.2910.00297
ORF1ab/nsp3226D226YGacTac44B.1.177.600.000874
ORF1ab/nsp3226D226DgaCgaT44B.1.4390.023669
ORF1ab/nsp3226D226YGacTac33AY.1020.00008
ORF1ab/nsp3226D226GgAcgGc33AY.1090.002219
ORF1ab/nsp3226D226DgaCgaT33AY.200.000117
ORF1ab/nsp3226D226DgaCgaT33AY.290.000047
ORF1ab/nsp3226D226AgAcgCc33AY.290.000047
ORF1ab/nsp3226D226YGacTac33AY.390.000074
ORF1ab/nsp3226D226DgaCgaT33AY.390.000074
ORF1ab/nsp3226D226NGacAac33AY.470.000093
ORF1ab/nsp3226D226DgaCgaT33AY.650.001599
ORF1ab/nsp3226D226YGacTac33AY.830.005172
ORF1ab/nsp3226D226delGAC---33B.10.000027
ORF1ab/nsp3226D226delGAC---33B.1.10.000054
ORF1ab/nsp3226D226delGAC---33B.1.1.330.001263
ORF1ab/nsp3226D226GgAcgGc33B.1.1.70.000003
ORF1ab/nsp3226D226DgaCgaT33B.1.1.700.001023
ORF1ab/nsp3226D226DgaCgaT33B.1.1600.000094
ORF1ab/nsp3226D226HGacCac33B.1.258.170.000312
ORF1ab/nsp3226D226DgaCgaT33B.1.3510.000089
ORF1ab/nsp3226D226GgAcgGc33B.1.617.20.000011
ORF1ab/nsp3226D226GgAcgGc33C.370.000348
ORF1ab/nsp3226D226VgAcgTc22All0
ORF1ab/nsp3226D226DgaCgaT22AY.1020.000053
ORF1ab/nsp3226D226GgAcgGc22AY.1150.010417
ORF1ab/nsp3226D226GgAcgGc22AY.1160.000574
ORF1ab/nsp3226D226DgaCgaT22AY.1200.000074
ORF1ab/nsp3226D226YGacTac22AY.1210.000271
ORF1ab/nsp3226D226NGacAac22AY.140.000176
ORF1ab/nsp3226D226DgaCgaT22AY.140.000176
ORF1ab/nsp3226D226GgAcgGc22AY.250.000012
ORF1ab/nsp3226D226AgAcgCc22AY.250.000012
ORF1ab/nsp3226D226YGacTac22AY.250.000012
ORF1ab/nsp3226D226NGacAac22AY.430.000009
ORF1ab/nsp3226D226EgaCgaA22AY.430.000009
ORF1ab/nsp3226D226GgAcgGc22AY.460.000208
ORF1ab/nsp3226D226DgaCgaT22AY.46.60.000144
ORF1ab/nsp3226D226YGacTac22AY.50.000041
ORF1ab/nsp3226D226YGacTac22AY.610.00021
ORF1ab/nsp3226D226NGacAac22AY.750.000112
ORF1ab/nsp3226D226YGacTac22AY.98.10.000097
ORF1ab/nsp3226D226NGacAac22AY.98.10.000097
ORF1ab/nsp3226D226YGacTac22B0.000256
ORF1ab/nsp3226D226EgaCgaA22B.10.000018
ORF1ab/nsp3226D226delGAC---22B.1.1.3480.001592
ORF1ab/nsp3226D226YGacTac22B.1.1.5190.000079
ORF1ab/nsp3226D226DgaCgaT22B.1.1.5190.000079
ORF1ab/nsp3226D226delGAC---22B.1.1.70.000002
ORF1ab/nsp3226D226YGacTac22B.1.1600.000062
ORF1ab/nsp3226D226GgAcgGc22B.1.1770.000026
ORF1ab/nsp3226D226DgaCgaT22B.1.177.810.000379
ORF1ab/nsp3226D226NGacAac22B.1.2210.000142
ORF1ab/nsp3226D226NGacAac22B.1.3510.000059
ORF1ab/nsp3226D226YGacTac22B.1.4970.00063
ORF1ab/nsp3226D226DgaCgaT22B.1.5950.000522
ORF1ab/nsp3226D226delGAC---22B.1.617.20.000008
ORF1ab/nsp3226D226NGacAac22B.1.617.20.000008
ORF1ab/nsp3226D226del1gAcg-c22B.1.6270.00404
ORF1ab/nsp3226D226DgaCgaT22B.1.6370.000146
ORF1ab/nsp3226D226DgaCgaT22D.20.00015
ORF1ab/nsp3226D226delGAC---22N.60.014184
ORF1ab/nsp3226D226YGacTac22N.90.011905
ORF1ab/nsp3226D226DgaCgaT22P.10.000032
ORF1ab/nsp3226D226YGacTac22P.1.10.000635
ORF1ab/nsp3226D226AgAcgCc22P.1.140.000096
ORF1ab/nsp3226D226DgaCgaT22P.1.170.000324
ORF1ab/nsp3226D226NGacAac22Q.80.00033
ORF1ab/nsp3226D226YGacTac22R.10.00018
ORF1ab/nsp3226D226YGacTac11A0.000387
ORF1ab/nsp3226D226YGacTac11A.30.002096
ORF1ab/nsp3226D226SGAcAGc11All0
ORF1ab/nsp3226D226IGACATT11All0
ORF1ab/nsp3226D226DgaCgaT11AY.1000.000046
ORF1ab/nsp3226D226HGacCac11AY.1020.000027
ORF1ab/nsp3226D226IGACATT11AY.1030.000006
ORF1ab/nsp3226D226AgAcgCc11AY.1030.000006
ORF1ab/nsp3226D226DgaCgaT11AY.1060.000335
ORF1ab/nsp3226D226YGacTac11AY.1060.000335
ORF1ab/nsp3226D226YGacTac11AY.1090.00074
ORF1ab/nsp3226D226delGAC---11AY.110.001339
ORF1ab/nsp3226D226DgaCgaT11AY.1110.000183
ORF1ab/nsp3226D226DgaCgaT11AY.1160.000287
ORF1ab/nsp3226D226delGAC---11AY.1200.000037
ORF1ab/nsp3226D226DgaCgaT11AY.1210.000135
ORF1ab/nsp3226D226YGacTac11AY.130.000161
ORF1ab/nsp3226D226DgaCgaT11AY.160.00038
ORF1ab/nsp3226D226GgAcgGc11AY.160.00038
ORF1ab/nsp3226D226DgaCgaT11AY.16.10.00047
ORF1ab/nsp3226D226YGacTac11AY.16.10.00047
ORF1ab/nsp3226D226HGacCac11AY.200.000039
ORF1ab/nsp3226D226NGacAac11AY.260.000028
ORF1ab/nsp3226D226YGacTac11AY.260.000028
ORF1ab/nsp3226D226YGacTac11AY.280.00189
ORF1ab/nsp3226D226GgAcgGc11AY.290.000016
ORF1ab/nsp3226D226GgAcgGc11AY.30.00001
ORF1ab/nsp3226D226YGacTac11AY.330.000067
ORF1ab/nsp3226D226NGacAac11AY.340.000097
ORF1ab/nsp3226D226AgAcgCc11AY.370.000316
ORF1ab/nsp3226D226NGacAac11AY.390.000025
ORF1ab/nsp3226D226DgaCgaT11AY.39.10.00004
ORF1ab/nsp3226D226YGacTac11AY.39.10.00004
ORF1ab/nsp3226D226AgAcgCc11AY.40.000002
ORF1ab/nsp3226D226EgaCgaA11AY.40.000002
ORF1ab/nsp3226D226NGacAac11AY.420.00004
ORF1ab/nsp3226D226HGacCac11AY.430.000004
ORF1ab/nsp3226D226delGAC---11AY.430.000004
ORF1ab/nsp3226D226GgAcgGc11AY.440.000006
ORF1ab/nsp3226D226EgaCgaA11AY.440.000006
ORF1ab/nsp3226D226HGacCac11AY.440.000006
ORF1ab/nsp3226D226AgAcgCc11AY.440.000006
ORF1ab/nsp3226D226DgaCgaT11AY.450.000122
ORF1ab/nsp3226D226EgaCgaA11AY.460.000104
ORF1ab/nsp3226D226YGacTac11AY.46.30.000934
ORF1ab/nsp3226D226DgaCgaT11AY.46.50.000198
ORF1ab/nsp3226D226GgAcgGc11AY.46.60.000072
ORF1ab/nsp3226D226HGacCac11AY.50.000021
ORF1ab/nsp3226D226GgAcgGc11AY.570.000656
ORF1ab/nsp3226D226DgaCgaT11AY.70.000196
ORF1ab/nsp3226D226DgaCgaT11AY.720.001361
ORF1ab/nsp3226D226GgAcgGc11AY.750.000056
ORF1ab/nsp3226D226DgaCgaT11AY.750.000056
ORF1ab/nsp3226D226DgaCgaT11AY.75.10.00018
ORF1ab/nsp3226D226YGacTac11AY.840.000437
ORF1ab/nsp3226D226delGAC---11AY.90.000068
ORF1ab/nsp3226D226DgaCgaT11AY.9.10.000084
ORF1ab/nsp3226D226YGacTac11AY.9.10.000084
ORF1ab/nsp3226D226YGacTac11AY.940.000443
ORF1ab/nsp3226D226YGacTac11AY.950.000761
ORF1ab/nsp3226D226NGacAac11AY.980.000079
ORF1ab/nsp3226D226DgaCgaT11AY.980.000079
ORF1ab/nsp3226D226YGacTac11AY.99.20.000092
ORF1ab/nsp3226D226del1gACg-T11B0.000128
ORF1ab/nsp3226D226NGacAac11B0.000128
ORF1ab/nsp3226D226HGacCac11B.10.000009
ORF1ab/nsp3226D226VgAcgTc11B.10.000009
ORF1ab/nsp3226D226NGacAac11B.10.000009
ORF1ab/nsp3226D226HGacCac11B.1.10.000018
ORF1ab/nsp3226D226YGacTac11B.1.10.000018
ORF1ab/nsp3226D226GgAcgGc11B.1.10.000018
ORF1ab/nsp3226D226NGacAac11B.1.10.000018
ORF1ab/nsp3226D226SGAcAGc11B.1.1.1390.022727
ORF1ab/nsp3226D226NGacAac11B.1.1.1410.002012
ORF1ab/nsp3226D226YGacTac11B.1.1.1530.001095
ORF1ab/nsp3226D226YGacTac11B.1.1.2140.000055
ORF1ab/nsp3226D226NGacAac11B.1.1.2140.000055
ORF1ab/nsp3226D226YGacTac11B.1.1.2160.00089
ORF1ab/nsp3226D226DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp3226D226YGacTac11B.1.1.270.00565
ORF1ab/nsp3226D226DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp3226D226DgaCgaT11B.1.1.330.000421
ORF1ab/nsp3226D226DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp3226D226YGacTac11B.1.1.4340.000349
ORF1ab/nsp3226D226DgaCgaT11B.1.1.5230.001563
ORF1ab/nsp3226D226NGacAac11B.1.1.630.000386
ORF1ab/nsp3226D226VgAcgTc11B.1.1.70.000001
ORF1ab/nsp3226D226HGacCac11B.1.1.70.000001
ORF1ab/nsp3226D226GgAcgGc11B.1.1470.000756
ORF1ab/nsp3226D226GgAcgGc11B.1.1600.000031
ORF1ab/nsp3226D226DgaCgaT11B.1.177.520.001757
ORF1ab/nsp3226D226DgaCgaT11B.1.177.690.001484
ORF1ab/nsp3226D226EgaCgaG11B.1.20.000009
ORF1ab/nsp3226D226AgAcgCc11B.1.20.000009
ORF1ab/nsp3226D226del1Gac-ac11B.1.20.000009
ORF1ab/nsp3226D226DgaCgaT11B.1.221.20.004016
ORF1ab/nsp3226D226YGacTac11B.1.221.30.000833
ORF1ab/nsp3226D226DgaCgaT11B.1.2400.000216
ORF1ab/nsp3226D226DgaCgaT11B.1.2580.000067
ORF1ab/nsp3226D226NGacAac11B.1.258.110.000396
ORF1ab/nsp3226D226DgaCgaT11B.1.2790.000514
ORF1ab/nsp3226D226DgaCgaT11B.1.2930.0125
ORF1ab/nsp3226D226YGacTac11B.1.3010.005917
ORF1ab/nsp3226D226YGacTac11B.1.3050.002151
ORF1ab/nsp3226D226DgaCgaT11B.1.3240.001605
ORF1ab/nsp3226D226EgaCgaG11B.1.3320.003497
ORF1ab/nsp3226D226HGacCac11B.1.3360.002439
ORF1ab/nsp3226D226YGacTac11B.1.3510.00003
ORF1ab/nsp3226D226DgaCgaT11B.1.36.180.00042
ORF1ab/nsp3226D226GgAcgGc11B.1.3620.001541
ORF1ab/nsp3226D226DgaCgaT11B.1.3690.000285
ORF1ab/nsp3226D226YGacTac11B.1.416.10.001563
ORF1ab/nsp3226D226NGacAac11B.1.4280.00102
ORF1ab/nsp3226D226delGAC---11B.1.4290.000024
ORF1ab/nsp3226D226DgaCgaT11B.1.438.10.000107
ORF1ab/nsp3226D226EgaCgaA11B.1.466.20.000391
ORF1ab/nsp3226D226DgaCgaT11B.1.5010.007353
ORF1ab/nsp3226D226DgaCgaT11B.1.5170.000427
ORF1ab/nsp3226D226DgaCgaT11B.1.5260.000024
ORF1ab/nsp3226D226DgaCgaT11B.1.5670.003333
ORF1ab/nsp3226D226DgaCgaT11B.1.5680.001111
ORF1ab/nsp3226D226YGacTac11B.1.5960.000087
ORF1ab/nsp3226D226NGacAac11B.1.5960.000087
ORF1ab/nsp3226D226GgAcgGc11B.1.617.10.000129
ORF1ab/nsp3226D226YGacTac11B.1.617.10.000129
ORF1ab/nsp3226D226YGacTac11B.1.6210.000089
ORF1ab/nsp3226D226YGacTac11B.1.6230.000536
ORF1ab/nsp3226D226delGAC---11B.1.6300.005236
ORF1ab/nsp3226D226NGacAac11B.1.6370.000073
ORF1ab/nsp3226D226DgaCgaT11B.1.930.000934
ORF1ab/nsp3226D226NGacAac11C.10.002392
ORF1ab/nsp3226D226DgaCgaT11C.210.142857
ORF1ab/nsp3226D226DgaCgaT11C.370.000116
ORF1ab/nsp3226D226YGacTac11C.370.000116
ORF1ab/nsp3226D226GgAcgGc11P.10.000016
ORF1ab/nsp3226D226NGacAac11P.10.000016
ORF1ab/nsp3226D226delGAC---11P.10.000016
ORF1ab/nsp3226D226YGacTac11P.10.000016
ORF1ab/nsp3226D226DgaCgaT11P.1.140.000048
ORF1ab/nsp3226D226GgAcgGc11P.1.150.000232
ORF1ab/nsp3226D226DgaCgaT11P.1.150.000232
ORF1ab/nsp3226D226YGacTac11P.1.170.000162
ORF1ab/nsp3226D226DgaCgaT11P.20.000187
ORF1ab/nsp3226D226YGacTac11P.20.000187
ORF1ab/nsp3226D226DgaCgaT11Q.10.000126
ORF1ab/nsp3226D226YGacTac11Q.30.000145
ORF1ab/nsp3226D226DgaCgaT11Q.80.000165
ORF1ab/nsp3226D226delGAC---11R.10.00009