CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 225 | A225V | A1043V | nonsyn | gCa | gTa | 2171 | 2171 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225A | A1043A | syn | gcA | gcT | 653 | 525 | 0.803982 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225A | A1043A | syn | gcA | gcG | 653 | 97 | 0.148545 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225A | A1043A | syn | gcA | gcC | 653 | 31 | 0.0474732 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225T | A1043T | nonsyn | Gca | Aca | 368 | 368 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225S | A1043S | nonsyn | Gca | Tca | 91 | 89 | 0.978022 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225S | A1043S | nonsyn | GCA | AGT | 91 | 1 | 0.010989 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225S | A1043S | nonsyn | GcA | TcT | 91 | 1 | 0.010989 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225D | A1043D | nonsyn | gCA | gAT | 80 | 80 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225del | A1043del | del | GCA | --- | 28 | 28 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225E | A1043E | nonsyn | gCa | gAa | 10 | 10 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225P | A1043P | nonsyn | Gca | Cca | 2 | 2 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225del1 | A1043del1 | del | Gca | -ca | 2 | 1 | 0.5 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225del1 | A1043del1 | del | gcA | gc- | 2 | 1 | 0.5 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225L | A1043L | nonsyn | GCa | TTa | 1 | 1 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225del2 | A1043del2 | del | gCA | g-- | 1 | 1 | 1 | 3392-3394 |
ORF1ab/nsp3 | 225 | A225G | A1043G | nonsyn | gCA | gGT | 1 | 1 | 1 | 3392-3394 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2171 | 2171 | All | 0.000415 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 525 | 653 | All | 0.0001 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 97 | 653 | All | 0.000019 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 31 | 653 | All | 0.000006 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 471 | 483 | B.1.1.7 | 0.000422 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 8 | 483 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 4 | 483 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 368 | 368 | All | 0.00007 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 209 | 209 | AY.103 | 0.001298 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 205 | 205 | B.1.1.186 | 0.704467 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 204 | 204 | B.1.1.7 | 0.000183 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 190 | 190 | B.1.177 | 0.002502 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 145 | 145 | B.1.617.2 | 0.000546 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 117 | 117 | AY.4 | 0.000182 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 97 | 97 | AY.25 | 0.000583 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 89 | 91 | All | 0.000017 |
ORF1ab/nsp3 | 225 | A225S | GCA | AGT | 1 | 91 | All | 0 |
ORF1ab/nsp3 | 225 | A225S | GcA | TcT | 1 | 91 | All | 0 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 86 | 86 | AY.43 | 0.000381 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 80 | 80 | All | 0.000015 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 76 | 76 | B.1.160 | 0.00237 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 57 | 57 | B.1.2 | 0.000502 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 57 | 57 | B.1.596 | 0.004967 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 55 | 55 | B.1.1.7 | 0.000049 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 54 | 54 | AY.5 | 0.001115 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 51 | 51 | AY.120 | 0.001896 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 45 | 45 | B.1 | 0.000412 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 44 | 44 | B.1.1.222 | 0.008976 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 42 | 42 | B.1.177.21 | 0.003212 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 40 | 40 | AY.39 | 0.000988 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 39 | 39 | B.1.36.22 | 0.047101 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 38 | 38 | AY.44 | 0.000231 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 19 | 37 | AY.44 | 0.000116 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 12 | 37 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 6 | 37 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 37 | 37 | B.1.241 | 0.030032 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 27 | 30 | AY.25 | 0.000162 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 3 | 30 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 30 | 30 | B.1.429 | 0.000706 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 29 | 29 | B.1.1 | 0.000526 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 29 | 29 | B.1.429 | 0.000682 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 28 | 28 | All | 0.000005 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 22 | 22 | B.1.177.10 | 0.019315 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 19 | 19 | B.1.240 | 0.004096 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 19 | 19 | B.1.351 | 0.000565 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 14 | 14 | AY.53 | 0.004025 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 5 | 12 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 4 | 12 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 3 | 12 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 12 | 12 | AY.4.5 | 0.00129 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 11 | 11 | AY.99.2 | 0.001014 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 11 | 11 | B.1.199 | 0.045455 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 9 | 9 | B.1.1.526 | 0.031915 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 7 | 8 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 8 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 4 | 8 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 2 | 8 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 2 | 8 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 8 | 8 | Q.7 | 0.008889 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 7 | 7 | B.1.1.521 | 0.037433 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 6 | 7 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 225 | A225S | GcA | TcT | 1 | 7 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 7 | 7 | P.1.17.1 | 0.006124 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 6 | 6 | AY.114 | 0.001387 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 3 | 6 | B.1 | 0.000027 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 3 | 6 | B.1 | 0.000027 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 6 | 6 | B.1.1.192 | 0.013857 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 6 | 6 | B.1.509 | 0.005195 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 6 | 6 | L.3 | 0.021277 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | AY.46.1 | 0.004107 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 3 | 4 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 4 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 2 | 4 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 2 | 4 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 2 | 3 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 3 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | B.1.356 | 0.005181 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | B.1.36.21 | 0.006479 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | C.20 | 0.230769 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 225 | A225P | Gca | Cca | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 225 | A225del1 | Gca | -ca | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 225 | A225del1 | gcA | gc- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.1.217 | 0.007273 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.1.379 | 0.0625 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.518 | 0.023529 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 225 | A225P | Gca | Cca | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 225 | A225L | GCa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 225 | A225del2 | gCA | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 225 | A225G | gCA | gGT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 225 | A225G | gCA | gGT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 225 | A225del2 | gCA | g-- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 225 | A225del1 | Gca | -ca | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 225 | A225P | Gca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 225 | A225S | GCA | AGT | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.159 | 0.012195 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.177.36 | 0.016129 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 225 | A225del1 | gcA | gc- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 225 | A225D | gCA | gAT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 225 | A225L | GCa | TTa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcT | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp3 | 225 | A225T | Gca | Aca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 225 | A225S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 225 | A225E | gCa | gAa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 225 | A225A | gcA | gcC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 225 | A225del | GCA | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 225 | A225V | gCa | gTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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