CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 218 | D218E | D1036E | nonsyn | gaC | gaA | 2934 | 2904 | 0.989775 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218E | D1036E | nonsyn | gaC | gaG | 2934 | 30 | 0.0102249 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218G | D1036G | nonsyn | gAc | gGc | 749 | 739 | 0.986649 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218G | D1036G | nonsyn | gAC | gGA | 749 | 10 | 0.0133511 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218A | D1036A | nonsyn | gAc | gCc | 498 | 498 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218D | D1036D | syn | gaC | gaT | 456 | 456 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218N | D1036N | nonsyn | Gac | Aac | 422 | 422 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218Y | D1036Y | nonsyn | Gac | Tac | 149 | 149 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218del | D1036del | del | GAC | --- | 30 | 30 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218H | D1036H | nonsyn | Gac | Cac | 5 | 5 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218V | D1036V | nonsyn | gAc | gTc | 2 | 2 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218del1 | D1036del1 | del | gaC | ga- | 2 | 1 | 0.5 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218del1 | D1036del1 | del | Gac | -ac | 2 | 1 | 0.5 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218X | D1036X | nonsyn | GaC | TaA | 2 | 1 | 0.5 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218X | D1036X | nonsyn | GAC | TGA | 2 | 1 | 0.5 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218F | D1036F | nonsyn | GAc | TTc | 1 | 1 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218P | D1036P | nonsyn | GAc | CCc | 1 | 1 | 1 | 3371-3373 |
ORF1ab/nsp3 | 218 | D218C | D1036C | nonsyn | GAc | TGc | 1 | 1 | 1 | 3371-3373 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 2904 | 2934 | All | 0.000555 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaG | 30 | 2934 | All | 0.000006 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1749 | 1749 | B.1.1 | 0.031728 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 739 | 749 | All | 0.000141 |
ORF1ab/nsp3 | 218 | D218G | gAC | gGA | 10 | 749 | All | 0.000002 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 738 | 738 | B.1.1.294 | 0.934177 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 498 | 498 | All | 0.000095 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 456 | 456 | All | 0.000087 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 424 | 424 | AY.4 | 0.00066 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 422 | 422 | All | 0.000081 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 276 | 276 | B.1.1.7 | 0.000247 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 217 | 217 | B.1.1.7 | 0.000194 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 155 | 155 | B.1.1.7 | 0.000139 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 149 | 149 | All | 0.000028 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 102 | 102 | B.1.2 | 0.000898 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 84 | 84 | AA.1 | 0.608696 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 72 | 72 | B.1.1.519 | 0.002859 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 64 | 64 | B.1.1.465 | 1 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 63 | 63 | B.1.1.7 | 0.000056 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 60 | 60 | B.1.1.366 | 0.952381 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 56 | 56 | B.1.1.466 | 0.486957 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 51 | 51 | B.1.1.467 | 0.980769 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 43 | 43 | M.1 | 1 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 38 | 38 | B.1.422 | 0.030869 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 31 | 31 | AY.4 | 0.000048 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 30 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaG | 27 | 29 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 2 | 29 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 29 | 29 | P.2 | 0.005412 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 27 | 27 | B.1.1.318 | 0.008147 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 21 | 21 | AY.118 | 0.001316 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 20 | 20 | D.2 | 0.001501 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 18 | 18 | B.1.1.271 | 1 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 17 | 17 | B.1.429 | 0.0004 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 16 | 16 | U.3 | 0.061776 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 13 | 13 | AY.39.1 | 0.000515 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 13 | 13 | M.3 | 1 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 12 | 12 | M.2 | 1 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 11 | 11 | B.1.126 | 0.014031 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 10 | 10 | AY.94 | 0.004427 |
ORF1ab/nsp3 | 218 | D218G | gAC | gGA | 7 | 10 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 3 | 10 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 7 | 7 | B.1.1.161 | 0.024735 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 6 | 6 | AY.109 | 0.004438 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 6 | 6 | B.1.1.285 | 0.039216 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 6 | 6 | B.1.362 | 0.009245 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 6 | 6 | B.1.366 | 0.029268 |
ORF1ab/nsp3 | 218 | D218H | Gac | Cac | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp3 | 218 | D218G | gAC | gGA | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 5 | 5 | B.1.177.6 | 0.004883 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 4 | 4 | B.1.1.409 | 0.011331 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 4 | 4 | B.3.1 | 0.006633 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 218 | D218H | Gac | Cac | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 3 | 3 | B.1.1.163 | 0.022901 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | B.1.1.464 | 0.004418 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 218 | D218X | GAC | TGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218G | gAC | gGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218X | GaC | TaA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 218 | D218V | gAc | gTc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 218 | D218del1 | Gac | -ac | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 218 | D218X | GAC | TGA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 218 | D218X | GaC | TaA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 218 | D218del1 | gaC | ga- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 2 | 2 | B.1.445 | 0.023529 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaG | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218C | GAc | TGc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 218 | D218P | GAc | CCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 218 | D218F | GAc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 218 | D218C | GAc | TGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 218 | D218V | gAc | gTc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 218 | D218H | Gac | Cac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 218 | D218F | GAc | TTc | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.449 | 0.022727 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 218 | D218V | gAc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 218 | D218del1 | Gac | -ac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.1.75 | 0.010638 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaG | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 218 | D218P | GAc | CCc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 218 | D218H | Gac | Cac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 218 | D218A | gAc | gCc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 218 | D218G | gAc | gGc | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 218 | D218del1 | gaC | ga- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 218 | D218N | Gac | Aac | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 218 | D218E | gaC | gaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 218 | D218Y | Gac | Tac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 218 | D218del | GAC | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 218 | D218D | gaC | gaT | 1 | 1 | W.1 | 0.008696 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|