CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 207 | V207L | V1025L | nonsyn | Gtg | Ttg | 1441 | 1434 | 0.995142 | 3338-3340 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1434 | 1441 | All | 0.000274 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 302 | 302 | B.1.1.7 | 0.00027 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 222 | 222 | B.1.527 | 0.822222 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 138 | 138 | B.1.617.2 | 0.00052 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 121 | 122 | AY.43 | 0.000536 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 75 | 75 | AY.4 | 0.000117 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 68 | 68 | B.1 | 0.000623 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 42 | 42 | B.1.177 | 0.000553 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 30 | 30 | AY.5 | 0.000619 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 23 | 24 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 21 | 21 | B.1.77 | 0.954545 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 20 | 20 | B.1.1.519 | 0.000794 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 18 | 18 | B.23 | 0.052632 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 16 | 16 | AY.120 | 0.000595 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 9 | 9 | AY.46.3 | 0.008403 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 8 | 8 | AY.107 | 0.003728 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 7 | 7 | AY.1 | 0.00277 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 6 | 6 | B.1.177.24 | 0.007772 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 3 | 3 | B.1.243.2 | 0.043478 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.1.404 | 0.031746 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 207 | V207L | Gtg | Ttg | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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