CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 203

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3203Q203HQ1021HnonsyncaGcaT221922060.9941423326-3328
ORF1ab/nsp3203Q203HQ1021HnonsyncaGcaC2219130.005858493326-3328
ORF1ab/nsp3203Q203RQ1021RnonsyncAgcGg7847770.9910713326-3328
ORF1ab/nsp3203Q203RQ1021RnonsyncAGcGT78440.005102043326-3328
ORF1ab/nsp3203Q203RQ1021RnonsyncAGcGA78410.001275513326-3328
ORF1ab/nsp3203Q203RQ1021RnonsynCAgAGg78410.001275513326-3328
ORF1ab/nsp3203Q203RQ1021RnonsynCAGAGA78410.001275513326-3328
ORF1ab/nsp3203Q203QQ1021QsyncaGcaA19419413326-3328
ORF1ab/nsp3203Q203delQ1021deldelCAG---18018013326-3328
ORF1ab/nsp3203Q203LQ1021LnonsyncAgcTg1141130.9912283326-3328
ORF1ab/nsp3203Q203LQ1021LnonsyncAGcTT11410.008771933326-3328
ORF1ab/nsp3203Q203KQ1021KnonsynCagAag65630.9692313326-3328
ORF1ab/nsp3203Q203KQ1021KnonsynCaGAaA6520.03076923326-3328
ORF1ab/nsp3203Q203PQ1021PnonsyncAgcCg34310.9117653326-3328
ORF1ab/nsp3203Q203PQ1021PnonsyncAGcCA3420.05882353326-3328
ORF1ab/nsp3203Q203PQ1021PnonsyncAGcCT3410.02941183326-3328
ORF1ab/nsp3203Q203XQ1021XnonsynCagTag26240.9230773326-3328
ORF1ab/nsp3203Q203XQ1021XnonsynCaGTaA2620.07692313326-3328
ORF1ab/nsp3203Q203EQ1021EnonsynCagGag22200.9090913326-3328
ORF1ab/nsp3203Q203EQ1021EnonsynCaGGaA2220.09090913326-3328
ORF1ab/nsp3203Q203SQ1021SnonsynCAGTCA520.43326-3328
ORF1ab/nsp3203Q203SQ1021SnonsynCAgTCg520.43326-3328
ORF1ab/nsp3203Q203AQ1021AnonsynCAgGCg520.43326-3328
ORF1ab/nsp3203Q203AQ1021AnonsynCAGGCA520.43326-3328
ORF1ab/nsp3203Q203SQ1021SnonsynCAGTCT510.23326-3328
ORF1ab/nsp3203Q203AQ1021AnonsynCAGGCT510.23326-3328
ORF1ab/nsp3203Q203YQ1021YnonsynCaGTaT3313326-3328
ORF1ab/nsp3203Q203del2Q1021del2delcAGc--1113326-3328
ORF1ab/nsp3203Q203DQ1021DnonsynCaGGaT1113326-3328
ORF1ab/nsp3203Q203del1Q1021del1delCag-ag1113326-3328
ORF1ab/nsp3203Q203IQ1021InonsynCAGATT1113326-3328
ORF1ab/nsp3203Q203MQ1021MnonsynCAgATg1113326-3328
ORF1ab/nsp3203Q203NQ1021NnonsynCaGAaT1113326-3328
ORF1ab/nsp3203Q203GQ1021GnonsynCAgGGg1113326-3328

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3203Q203HcaGcaT22062219All0.000422
ORF1ab/nsp3203Q203HcaGcaC132219All0.000002
ORF1ab/nsp3203Q203RcAgcGg777784All0.000149
ORF1ab/nsp3203Q203RcAGcGT4784All0.000001
ORF1ab/nsp3203Q203RCAgAGg1784All0
ORF1ab/nsp3203Q203RCAGAGA1784All0
ORF1ab/nsp3203Q203RcAGcGA1784All0
ORF1ab/nsp3203Q203HcaGcaT479485B.1.1.70.000429
ORF1ab/nsp3203Q203HcaGcaC6485B.1.1.70.000005
ORF1ab/nsp3203Q203HcaGcaT227228B.1.1770.002989
ORF1ab/nsp3203Q203HcaGcaC1228B.1.1770.000013
ORF1ab/nsp3203Q203RcAgcGg199199S.10.985149
ORF1ab/nsp3203Q203QcaGcaA194194All0.000037
ORF1ab/nsp3203Q203RcAgcGg184184AY.360.027271
ORF1ab/nsp3203Q203delCAG---180180All0.000034
ORF1ab/nsp3203Q203HcaGcaT159160AY.40.000247
ORF1ab/nsp3203Q203HcaGcaC1160AY.40.000002
ORF1ab/nsp3203Q203RcAgcGg142142B.1.1.70.000127
ORF1ab/nsp3203Q203HcaGcaT123123AY.430.000545
ORF1ab/nsp3203Q203RcAgcGg115119B.1.1.2170.418182
ORF1ab/nsp3203Q203RcAGcGT4119B.1.1.2170.014545
ORF1ab/nsp3203Q203HcaGcaT115115B.1.6370.008403
ORF1ab/nsp3203Q203LcAgcTg113114All0.000022
ORF1ab/nsp3203Q203LcAGcTT1114All0
ORF1ab/nsp3203Q203HcaGcaT109109B.1.617.20.00041
ORF1ab/nsp3203Q203LcAgcTg9999AY.40.000154
ORF1ab/nsp3203Q203HcaGcaT7171B.1.466.20.027778
ORF1ab/nsp3203Q203KCagAag6365All0.000012
ORF1ab/nsp3203Q203KCaGAaA265All0
ORF1ab/nsp3203Q203HcaGcaT4848B.1.10.000871
ORF1ab/nsp3203Q203HcaGcaT4646AY.4.20.000998
ORF1ab/nsp3203Q203QcaGcaA4646B.1.1.70.000041
ORF1ab/nsp3203Q203HcaGcaT4344AY.440.000262
ORF1ab/nsp3203Q203HcaGcaC144AY.440.000006
ORF1ab/nsp3203Q203QcaGcaA4040AY.430.000177
ORF1ab/nsp3203Q203HcaGcaT3838AY.4.2.10.005662
ORF1ab/nsp3203Q203delCAG---3737B.1.1.70.000033
ORF1ab/nsp3203Q203HcaGcaT3737B.1.258.170.003847
ORF1ab/nsp3203Q203PcAgcCg3134All0.000006
ORF1ab/nsp3203Q203PcAGcCA234All0
ORF1ab/nsp3203Q203PcAGcCT134All0
ORF1ab/nsp3203Q203HcaGcaT3333AY.1190.001165
ORF1ab/nsp3203Q203KCagAag3333AY.440.000201
ORF1ab/nsp3203Q203HcaGcaT3233B.10.000293
ORF1ab/nsp3203Q203HcaGcaC133B.10.000009
ORF1ab/nsp3203Q203HcaGcaT3232AY.1030.000199
ORF1ab/nsp3203Q203HcaGcaT3232B.1.5260.000752
ORF1ab/nsp3203Q203HcaGcaT3030AY.300.011872
ORF1ab/nsp3203Q203HcaGcaT2828AY.98.10.001356
ORF1ab/nsp3203Q203QcaGcaA2727B.1.2210.001918
ORF1ab/nsp3203Q203XCagTag2426All0.000005
ORF1ab/nsp3203Q203XCaGTaA226All0
ORF1ab/nsp3203Q203RcAgcGg2626B.1.2430.001809
ORF1ab/nsp3203Q203HcaGcaT2525AY.250.00015
ORF1ab/nsp3203Q203HcaGcaT2525AY.30.000249
ORF1ab/nsp3203Q203HcaGcaT2424B.1.20.000211
ORF1ab/nsp3203Q203QcaGcaA2323AY.1190.000812
ORF1ab/nsp3203Q203ECagGag2022All0.000004
ORF1ab/nsp3203Q203ECaGGaA222All0
ORF1ab/nsp3203Q203HcaGcaT2222AY.1020.000583
ORF1ab/nsp3203Q203HcaGcaT2020B.1.2210.001421
ORF1ab/nsp3203Q203HcaGcaT1919B.1.1600.000593
ORF1ab/nsp3203Q203HcaGcaT1818AY.260.00051
ORF1ab/nsp3203Q203HcaGcaT1818AY.540.001716
ORF1ab/nsp3203Q203RcAgcGg1616B.1.20.000141
ORF1ab/nsp3203Q203HcaGcaT1616B.1.360.002334
ORF1ab/nsp3203Q203HcaGcaT1515AY.330.001002
ORF1ab/nsp3203Q203delCAG---1515AY.440.000091
ORF1ab/nsp3203Q203HcaGcaT1515AY.50.00031
ORF1ab/nsp3203Q203HcaGcaT1515AY.9.20.000551
ORF1ab/nsp3203Q203HcaGcaT1414B.1.3510.000416
ORF1ab/nsp3203Q203HcaGcaT1313AY.390.000321
ORF1ab/nsp3203Q203delCAG---1313AY.40.00002
ORF1ab/nsp3203Q203RcAgcGg1313B.1.617.20.000049
ORF1ab/nsp3203Q203RcAgcGg1212AY.1030.000075
ORF1ab/nsp3203Q203HcaGcaT1212P.10.000189
ORF1ab/nsp3203Q203HcaGcaT1111AY.740.001272
ORF1ab/nsp3203Q203delCAG---1010AY.390.000247
ORF1ab/nsp3203Q203HcaGcaT99B.1.4270.000454
ORF1ab/nsp3203Q203delCAG---99B.1.4290.000212
ORF1ab/nsp3203Q203HcaGcaT99B.1.5250.001018
ORF1ab/nsp3203Q203delCAG---99B.1.617.20.000034
ORF1ab/nsp3203Q203RcAgcGg88AY.46.60.000578
ORF1ab/nsp3203Q203HcaGcaT88AY.99.20.000737
ORF1ab/nsp3203Q203QcaGcaA88B.1.1.2220.001632
ORF1ab/nsp3203Q203PcAgcCg88B.1.20.00007
ORF1ab/nsp3203Q203LcAgcTg67AY.1170.000507
ORF1ab/nsp3203Q203LcAGcTT17AY.1170.000085
ORF1ab/nsp3203Q203KCagAag77B.10.000064
ORF1ab/nsp3203Q203RcAgcGg77B.10.000064
ORF1ab/nsp3203Q203HcaGcaT77B.1.1.2160.006233
ORF1ab/nsp3203Q203HcaGcaT77B.1.1.670.031963
ORF1ab/nsp3203Q203HcaGcaT77B.1.36.100.033493
ORF1ab/nsp3203Q203PcAgcCg77B.1.617.20.000026
ORF1ab/nsp3203Q203HcaGcaT66AY.160.002278
ORF1ab/nsp3203Q203HcaGcaT66AY.200.000233
ORF1ab/nsp3203Q203QcaGcaA66AY.40.000009
ORF1ab/nsp3203Q203HcaGcaT66AY.610.000629
ORF1ab/nsp3203Q203delCAG---66B.1.10.000109
ORF1ab/nsp3203Q203RcAgcGg66B.1.1600.000187
ORF1ab/nsp3203Q203ACAgGCg25All0
ORF1ab/nsp3203Q203SCAgTCg25All0
ORF1ab/nsp3203Q203SCAGTCA25All0
ORF1ab/nsp3203Q203ACAGGCA25All0
ORF1ab/nsp3203Q203ACAGGCT15All0
ORF1ab/nsp3203Q203SCAGTCT15All0
ORF1ab/nsp3203Q203delCAG---55AY.1020.000133
ORF1ab/nsp3203Q203HcaGcaT55AY.290.000079
ORF1ab/nsp3203Q203delCAG---55AY.410.00147
ORF1ab/nsp3203Q203RcAgcGg55AY.50.000103
ORF1ab/nsp3203Q203HcaGcaT55AY.560.008026
ORF1ab/nsp3203Q203QcaGcaA55AY.98.10.000242
ORF1ab/nsp3203Q203QcaGcaA55B.10.000046
ORF1ab/nsp3203Q203XCagTag45B.10.000037
ORF1ab/nsp3203Q203XCaGTaA15B.10.000009
ORF1ab/nsp3203Q203QcaGcaA55B.1.10.000091
ORF1ab/nsp3203Q203HcaGcaT55B.1.1.5190.000199
ORF1ab/nsp3203Q203HcaGcaT55B.1.2670.092593
ORF1ab/nsp3203Q203HcaGcaT55B.1.6210.000443
ORF1ab/nsp3203Q203ECagGag55R.10.00045
ORF1ab/nsp3203Q203HcaGcaT44AY.1170.000338
ORF1ab/nsp3203Q203HcaGcaT44AY.120.10.001284
ORF1ab/nsp3203Q203HcaGcaT44AY.420.000161
ORF1ab/nsp3203Q203delCAG---44AY.50.000083
ORF1ab/nsp3203Q203QcaGcaA44AY.610.000419
ORF1ab/nsp3203Q203HcaGcaT44B.1.1.2220.000816
ORF1ab/nsp3203Q203XCagTag44B.1.1.70.000004
ORF1ab/nsp3203Q203delCAG---44B.1.20.000035
ORF1ab/nsp3203Q203ECagGag44B.1.20.000035
ORF1ab/nsp3203Q203QcaGcaA44B.1.20.000035
ORF1ab/nsp3203Q203HcaGcaT44B.1.6280.001409
ORF1ab/nsp3203Q203RCAGAGA14B.290.003509
ORF1ab/nsp3203Q203RCAgAGg14B.290.003509
ORF1ab/nsp3203Q203RcAgcGg14B.290.003509
ORF1ab/nsp3203Q203RcAGcGA14B.290.003509
ORF1ab/nsp3203Q203YCaGTaT33All0.000001
ORF1ab/nsp3203Q203HcaGcaT33AY.1000.000138
ORF1ab/nsp3203Q203delCAG---33AY.1030.000019
ORF1ab/nsp3203Q203RcAgcGg33AY.1200.000112
ORF1ab/nsp3203Q203HcaGcaT33AY.1210.000406
ORF1ab/nsp3203Q203RcAgcGg33AY.260.000085
ORF1ab/nsp3203Q203delCAG---33AY.30.00003
ORF1ab/nsp3203Q203QcaGcaA33AY.30.00003
ORF1ab/nsp3203Q203KCagAag33AY.420.000121
ORF1ab/nsp3203Q203KCagAag33AY.430.000013
ORF1ab/nsp3203Q203RcAgcGg33AY.430.000013
ORF1ab/nsp3203Q203HcaGcaT33AY.450.000365
ORF1ab/nsp3203Q203HcaGcaT33AY.46.60.000217
ORF1ab/nsp3203Q203QcaGcaA33AY.540.000286
ORF1ab/nsp3203Q203PcAgcCg33AY.7.10.000338
ORF1ab/nsp3203Q203HcaGcaT33B0.000383
ORF1ab/nsp3203Q203ECagGag23B.10.000018
ORF1ab/nsp3203Q203ACAGGCA13B.10.000009
ORF1ab/nsp3203Q203PcAgcCg13B.10.000009
ORF1ab/nsp3203Q203PcAGcCA13B.10.000009
ORF1ab/nsp3203Q203ACAGGCT13B.10.000009
ORF1ab/nsp3203Q203PcAGcCT13B.10.000009
ORF1ab/nsp3203Q203ECaGGaA13B.10.000009
ORF1ab/nsp3203Q203ACAgGCg13B.10.000009
ORF1ab/nsp3203Q203SCAGTCT13B.10.000009
ORF1ab/nsp3203Q203SCAgTCg13B.10.000009
ORF1ab/nsp3203Q203SCAGTCA13B.10.000009
ORF1ab/nsp3203Q203RcAgcGg33B.1.10.000054
ORF1ab/nsp3203Q203RcAgcGg33B.1.1.2410.006211
ORF1ab/nsp3203Q203delCAG---33B.1.1.330.001263
ORF1ab/nsp3203Q203delCAG---33B.1.1770.00004
ORF1ab/nsp3203Q203HcaGcaT33B.1.2430.000209
ORF1ab/nsp3203Q203HcaGcaT33B.1.4290.000071
ORF1ab/nsp3203Q203HcaGcaT33B.1.5950.000783
ORF1ab/nsp3203Q203XCagTag33D.20.000225
ORF1ab/nsp3203Q203HcaGcaT33P.1.100.000808
ORF1ab/nsp3203Q203HcaGcaT33P.20.00056
ORF1ab/nsp3203Q203XCagTag120.055556
ORF1ab/nsp3203Q203SCAgTCg120.055556
ORF1ab/nsp3203Q203SCAGTCA120.055556
ORF1ab/nsp3203Q203XCaGTaA120.055556
ORF1ab/nsp3203Q203ECagGag120.055556
ORF1ab/nsp3203Q203ACAgGCg120.055556
ORF1ab/nsp3203Q203ACAGGCA120.055556
ORF1ab/nsp3203Q203PcAgcCg120.055556
ORF1ab/nsp3203Q203PcAGcCA120.055556
ORF1ab/nsp3203Q203ECaGGaA120.055556
ORF1ab/nsp3203Q203HcaGcaT22A.110.117647
ORF1ab/nsp3203Q203delCAG---22AE.60.076923
ORF1ab/nsp3203Q203RcAgcGg22AY.1000.000092
ORF1ab/nsp3203Q203HcaGcaT22AY.1010.000981
ORF1ab/nsp3203Q203delCAG---22AY.1180.000125
ORF1ab/nsp3203Q203QcaGcaA22AY.1180.000125
ORF1ab/nsp3203Q203KCagAag22AY.1210.000271
ORF1ab/nsp3203Q203HcaGcaT22AY.16.10.00094
ORF1ab/nsp3203Q203RcAgcGg22AY.200.000078
ORF1ab/nsp3203Q203delCAG---22AY.200.000078
ORF1ab/nsp3203Q203HcaGcaT22AY.230.000139
ORF1ab/nsp3203Q203RcAgcGg22AY.290.000032
ORF1ab/nsp3203Q203RcAgcGg22AY.390.000049
ORF1ab/nsp3203Q203QcaGcaA22AY.390.000049
ORF1ab/nsp3203Q203HcaGcaT22AY.39.10.000079
ORF1ab/nsp3203Q203PcAgcCg22AY.40.000003
ORF1ab/nsp3203Q203RcAgcGg22AY.40.000003
ORF1ab/nsp3203Q203HcaGcaT22AY.4.50.000215
ORF1ab/nsp3203Q203delCAG---22AY.430.000009
ORF1ab/nsp3203Q203RcAgcGg22AY.440.000012
ORF1ab/nsp3203Q203HcaGcaT22AY.460.000208
ORF1ab/nsp3203Q203HcaGcaT22AY.530.000575
ORF1ab/nsp3203Q203delCAG---22AY.540.000191
ORF1ab/nsp3203Q203RcAgcGg22AY.700.000417
ORF1ab/nsp3203Q203HcaGcaT22AY.720.002721
ORF1ab/nsp3203Q203HcaGcaT22AY.770.002255
ORF1ab/nsp3203Q203KCagAag22B0.000256
ORF1ab/nsp3203Q203delCAG---22B.10.000018
ORF1ab/nsp3203Q203HcaGcaT22B.1.1.1740.006757
ORF1ab/nsp3203Q203HcaGcaT22B.1.1.2280.006098
ORF1ab/nsp3203Q203HcaGcaT22B.1.1.3170.000823
ORF1ab/nsp3203Q203delCAG---22B.1.1.3480.001592
ORF1ab/nsp3203Q203PcAgcCg22B.1.1.70.000002
ORF1ab/nsp3203Q203KCaGAaA12B.1.1.70.000001
ORF1ab/nsp3203Q203KCagAag12B.1.1.70.000001
ORF1ab/nsp3203Q203HcaGcaT22B.1.177.180.00232
ORF1ab/nsp3203Q203HcaGcaT22B.1.177.380.020833
ORF1ab/nsp3203Q203RcAgcGg22B.1.177.520.003515
ORF1ab/nsp3203Q203HcaGcaT22B.1.177.580.002663
ORF1ab/nsp3203Q203delCAG---22B.1.3510.000059
ORF1ab/nsp3203Q203delCAG---22B.1.351.20.000605
ORF1ab/nsp3203Q203HcaGcaT22B.1.351.20.000605
ORF1ab/nsp3203Q203HcaGcaT22B.1.4000.000858
ORF1ab/nsp3203Q203delCAG---22B.1.466.20.000782
ORF1ab/nsp3203Q203ECagGag22B.1.5260.000047
ORF1ab/nsp3203Q203HcaGcaT22B.1.5880.00182
ORF1ab/nsp3203Q203HcaGcaT22B.1.5970.009259
ORF1ab/nsp3203Q203QcaGcaA22B.1.617.20.000008
ORF1ab/nsp3203Q203HcaGcaT22B.1.621.10.001012
ORF1ab/nsp3203Q203KCagAag12B.290.003509
ORF1ab/nsp3203Q203KCaGAaA12B.290.003509
ORF1ab/nsp3203Q203HcaGcaT22B.60.00182
ORF1ab/nsp3203Q203HcaGcaT22D.20.00015
ORF1ab/nsp3203Q203delCAG---22N.60.014184
ORF1ab/nsp3203Q203ECagGag22P.10.000032
ORF1ab/nsp3203Q203delCAG---22P.1.70.000639
ORF1ab/nsp3203Q203QcaGcaA110.055556
ORF1ab/nsp3203Q203KCagAag11A0.000387
ORF1ab/nsp3203Q203QcaGcaA11A.2.20.001689
ORF1ab/nsp3203Q203HcaGcaT11AD.20.000219
ORF1ab/nsp3203Q203QcaGcaA11AE.10.011364
ORF1ab/nsp3203Q203HcaGcaT11AE.80.000489
ORF1ab/nsp3203Q203del1Cag-ag11All0
ORF1ab/nsp3203Q203del2cAGc--11All0
ORF1ab/nsp3203Q203MCAgATg11All0
ORF1ab/nsp3203Q203GCAgGGg11All0
ORF1ab/nsp3203Q203NCaGAaT11All0
ORF1ab/nsp3203Q203ICAGATT11All0
ORF1ab/nsp3203Q203DCaGGaT11All0
ORF1ab/nsp3203Q203RcAgcGg11AY.1020.000027
ORF1ab/nsp3203Q203QcaGcaA11AY.1030.000006
ORF1ab/nsp3203Q203XCagTag11AY.1030.000006
ORF1ab/nsp3203Q203delCAG---11AY.1080.001103
ORF1ab/nsp3203Q203HcaGcaT11AY.1090.00074
ORF1ab/nsp3203Q203HcaGcaT11AY.1110.000183
ORF1ab/nsp3203Q203HcaGcaT11AY.1140.000231
ORF1ab/nsp3203Q203MCAgATg11AY.1170.000085
ORF1ab/nsp3203Q203KCagAag11AY.1170.000085
ORF1ab/nsp3203Q203ICAGATT11AY.1170.000085
ORF1ab/nsp3203Q203NCaGAaT11AY.1170.000085
ORF1ab/nsp3203Q203HcaGcaT11AY.120.000316
ORF1ab/nsp3203Q203delCAG---11AY.1200.000037
ORF1ab/nsp3203Q203delCAG---11AY.140.000088
ORF1ab/nsp3203Q203RcAgcGg11AY.230.00007
ORF1ab/nsp3203Q203delCAG---11AY.250.000006
ORF1ab/nsp3203Q203HcaGcaT11AY.29.10.000221
ORF1ab/nsp3203Q203ECagGag11AY.30.00001
ORF1ab/nsp3203Q203HcaGcaC11AY.320.000532
ORF1ab/nsp3203Q203KCagAag11AY.330.000067
ORF1ab/nsp3203Q203XCagTag11AY.40.000002
ORF1ab/nsp3203Q203PcAgcCg11AY.4.20.000022
ORF1ab/nsp3203Q203RcAgcGg11AY.4.20.000022
ORF1ab/nsp3203Q203HcaGcaT11AY.4.30.000842
ORF1ab/nsp3203Q203HcaGcaT11AY.410.000294
ORF1ab/nsp3203Q203delCAG---11AY.420.00004
ORF1ab/nsp3203Q203PcAgcCg11AY.430.000004
ORF1ab/nsp3203Q203ECagGag11AY.430.000004
ORF1ab/nsp3203Q203LcAgcTg11AY.430.000004
ORF1ab/nsp3203Q203XCagTag11AY.440.000006
ORF1ab/nsp3203Q203PcAgcCg11AY.440.000006
ORF1ab/nsp3203Q203PcAgcCg11AY.470.000031
ORF1ab/nsp3203Q203delCAG---11AY.470.000031
ORF1ab/nsp3203Q203HcaGcaT11AY.490.003195
ORF1ab/nsp3203Q203RcAgcGg11AY.5.20.002463
ORF1ab/nsp3203Q203delCAG---11AY.5.30.000337
ORF1ab/nsp3203Q203KCagAag11AY.520.000814
ORF1ab/nsp3203Q203HcaGcaT11AY.550.000917
ORF1ab/nsp3203Q203RcAgcGg11AY.550.000917
ORF1ab/nsp3203Q203HcaGcaT11AY.570.000656
ORF1ab/nsp3203Q203HcaGcaT11AY.60.000041
ORF1ab/nsp3203Q203delCAG---11AY.610.000105
ORF1ab/nsp3203Q203HcaGcaT11AY.630.000387
ORF1ab/nsp3203Q203QcaGcaA11AY.650.000533
ORF1ab/nsp3203Q203HcaGcaT11AY.650.000533
ORF1ab/nsp3203Q203HcaGcaT11AY.670.000464
ORF1ab/nsp3203Q203HcaGcaT11AY.690.000187
ORF1ab/nsp3203Q203HcaGcaT11AY.70.000196
ORF1ab/nsp3203Q203delCAG---11AY.730.000665
ORF1ab/nsp3203Q203HcaGcaT11AY.75.10.00018
ORF1ab/nsp3203Q203XCagTag11AY.75.10.00018
ORF1ab/nsp3203Q203RcAgcGg11AY.830.001724
ORF1ab/nsp3203Q203HcaGcaT11AY.840.000437
ORF1ab/nsp3203Q203HcaGcaT11AY.850.000427
ORF1ab/nsp3203Q203HcaGcaT11AY.90.000068
ORF1ab/nsp3203Q203delCAG---11AY.90.000068
ORF1ab/nsp3203Q203HcaGcaT11AY.9.10.000084
ORF1ab/nsp3203Q203HcaGcaT11AY.920.000287
ORF1ab/nsp3203Q203HcaGcaT11AY.940.000443
ORF1ab/nsp3203Q203HcaGcaT11AY.980.000079
ORF1ab/nsp3203Q203RcAgcGg11AY.990.001049
ORF1ab/nsp3203Q203delCAG---11AY.99.20.000092
ORF1ab/nsp3203Q203HcaGcaT11AZ.20.000821
ORF1ab/nsp3203Q203YCaGTaT11B.10.000009
ORF1ab/nsp3203Q203DCaGGaT11B.10.000009
ORF1ab/nsp3203Q203KCagAag11B.1.10.000018
ORF1ab/nsp3203Q203del1Cag-ag11B.1.10.000018
ORF1ab/nsp3203Q203XCagTag11B.1.10.000018
ORF1ab/nsp3203Q203del2cAGc--11B.1.1.1390.022727
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.2040.00304
ORF1ab/nsp3203Q203PcAgcCg11B.1.1.2140.000055
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.2200.001859
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.260.005236
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.2790.001121
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.280.000311
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.3180.000302
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.3720.000689
ORF1ab/nsp3203Q203LcAgcTg11B.1.1.390.00051
ORF1ab/nsp3203Q203RcAgcGg11B.1.1.4340.000349
ORF1ab/nsp3203Q203QcaGcaA11B.1.1.500.000679
ORF1ab/nsp3203Q203HcaGcaT11B.1.1.500.000679
ORF1ab/nsp3203Q203delCAG---11B.1.1.520.012195
ORF1ab/nsp3203Q203QcaGcaA11B.1.1.630.000386
ORF1ab/nsp3203Q203LcAgcTg11B.1.1.70.000001
ORF1ab/nsp3203Q203ECagGag11B.1.1.70.000001
ORF1ab/nsp3203Q203HcaGcaT11B.1.110.30.000718
ORF1ab/nsp3203Q203delCAG---11B.1.110.30.000718
ORF1ab/nsp3203Q203delCAG---11B.1.1280.000635
ORF1ab/nsp3203Q203PcAgcCg11B.1.1770.000013
ORF1ab/nsp3203Q203YCaGTaT11B.1.1770.000013
ORF1ab/nsp3203Q203XCagTag11B.1.1770.000013
ORF1ab/nsp3203Q203HcaGcaT11B.1.177.120.000152
ORF1ab/nsp3203Q203delCAG---11B.1.177.510.004566
ORF1ab/nsp3203Q203HcaGcaT11B.1.2060.000816
ORF1ab/nsp3203Q203HcaGcaT11B.1.2130.014925
ORF1ab/nsp3203Q203PcAgcCg11B.1.214.20.0006
ORF1ab/nsp3203Q203HcaGcaT11B.1.2320.000537
ORF1ab/nsp3203Q203XCagTag11B.1.2340.000132
ORF1ab/nsp3203Q203HcaGcaT11B.1.2390.001221
ORF1ab/nsp3203Q203delCAG---11B.1.2430.00007
ORF1ab/nsp3203Q203delCAG---11B.1.2480.029412
ORF1ab/nsp3203Q203HcaGcaT11B.1.2580.000067
ORF1ab/nsp3203Q203RcAgcGg11B.1.258.170.000104
ORF1ab/nsp3203Q203HcaGcaT11B.1.2600.003344
ORF1ab/nsp3203Q203KCagAag11B.1.3010.005917
ORF1ab/nsp3203Q203HcaGcaC11B.1.3290.000608
ORF1ab/nsp3203Q203LcAgcTg11B.1.3380.008621
ORF1ab/nsp3203Q203LcAgcTg11B.1.351.30.000876
ORF1ab/nsp3203Q203QcaGcaA11B.1.360.000146
ORF1ab/nsp3203Q203HcaGcaT11B.1.36.180.00042
ORF1ab/nsp3203Q203HcaGcaT11B.1.36.290.000517
ORF1ab/nsp3203Q203XCagTag11B.1.362.20.004717
ORF1ab/nsp3203Q203XCagTag11B.1.3690.000285
ORF1ab/nsp3203Q203XCagTag11B.1.3850.010638
ORF1ab/nsp3203Q203XCagTag11B.1.3970.004854
ORF1ab/nsp3203Q203HcaGcaT11B.1.3980.002976
ORF1ab/nsp3203Q203HcaGcaC11B.1.438.10.000107
ORF1ab/nsp3203Q203HcaGcaT11B.1.4620.007246
ORF1ab/nsp3203Q203delCAG---11B.1.4990.00105
ORF1ab/nsp3203Q203HcaGcaT11B.1.5170.000427
ORF1ab/nsp3203Q203delCAG---11B.1.5170.000427
ORF1ab/nsp3203Q203delCAG---11B.1.5240.001406
ORF1ab/nsp3203Q203delCAG---11B.1.5500.013699
ORF1ab/nsp3203Q203HcaGcaT11B.1.5680.001111
ORF1ab/nsp3203Q203RcAgcGg11B.1.5750.000303
ORF1ab/nsp3203Q203HcaGcaT11B.1.5960.000087
ORF1ab/nsp3203Q203LcAgcTg11B.1.5960.000087
ORF1ab/nsp3203Q203HcaGcaT11B.1.6090.000479
ORF1ab/nsp3203Q203HcaGcaT11B.1.617.10.000129
ORF1ab/nsp3203Q203KCagAag11B.1.617.20.000004
ORF1ab/nsp3203Q203XCagTag11B.1.617.20.000004
ORF1ab/nsp3203Q203GCAgGGg11B.1.617.20.000004
ORF1ab/nsp3203Q203delCAG---11B.1.617.30.002985
ORF1ab/nsp3203Q203delCAG---11B.1.6210.000089
ORF1ab/nsp3203Q203KCagAag11B.1.6230.000536
ORF1ab/nsp3203Q203delCAG---11B.1.6300.005236
ORF1ab/nsp3203Q203RcAgcGg11B.1.6370.000073
ORF1ab/nsp3203Q203QcaGcaA11B.290.003509
ORF1ab/nsp3203Q203KCagAag11B.6.30.026316
ORF1ab/nsp3203Q203HcaGcaT11C.140.004329
ORF1ab/nsp3203Q203YCaGTaT11C.360.000911
ORF1ab/nsp3203Q203HcaGcaT11C.370.000116
ORF1ab/nsp3203Q203KCagAag11D.20.000075
ORF1ab/nsp3203Q203LcAgcTg11D.20.000075
ORF1ab/nsp3203Q203ECagGag11D.20.000075
ORF1ab/nsp3203Q203RcAgcGg11N.30.005814
ORF1ab/nsp3203Q203KCagAag11P.10.000016
ORF1ab/nsp3203Q203delCAG---11P.10.000016
ORF1ab/nsp3203Q203delCAG---11P.1.140.000048
ORF1ab/nsp3203Q203HcaGcaT11P.1.140.000048
ORF1ab/nsp3203Q203HcaGcaT11Q.10.000126
ORF1ab/nsp3203Q203LcAgcTg11Q.40.000455
ORF1ab/nsp3203Q203delCAG---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.