CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 20

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp320S20NS838NnonsynaGtaAt16316312777-2779
ORF1ab/nsp320S20SS838SsynagTagC16316312777-2779
ORF1ab/nsp320S20IS838InonsynaGtaTt15315312777-2779
ORF1ab/nsp320S20GS838GnonsynAgtGgt10710712777-2779
ORF1ab/nsp320S20delS838deldelAGT---575712777-2779
ORF1ab/nsp320S20RS838RnonsynAgtCgt40150.3752777-2779
ORF1ab/nsp320S20RS838RnonsynagTagA40150.3752777-2779
ORF1ab/nsp320S20RS838RnonsynagTagG40100.252777-2779
ORF1ab/nsp320S20del1S838del1delagTag-980.8888892777-2779
ORF1ab/nsp320S20del1S838del1delaGta-t910.1111112777-2779
ORF1ab/nsp320S20CS838CnonsynAgtTgt8812777-2779
ORF1ab/nsp320S20TS838TnonsynaGtaCt430.752777-2779
ORF1ab/nsp320S20TS838TnonsynaGTaCA410.252777-2779
ORF1ab/nsp320S20del2S838del2delaGTa--2212777-2779
ORF1ab/nsp320S20DS838DnonsynAGtGAt1112777-2779
ORF1ab/nsp320S20MS838MnonsynaGTaTG1112777-2779
ORF1ab/nsp320S20VS838VnonsynAGtGTt1112777-2779

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp320S20NaGtaAt163163All0.000031
ORF1ab/nsp320S20SagTagC163163All0.000031
ORF1ab/nsp320S20IaGtaTt153153All0.000029
ORF1ab/nsp320S20GAgtGgt107107All0.00002
ORF1ab/nsp320S20NaGtaAt7676AY.40.000118
ORF1ab/nsp320S20SagTagC6262AY.250.000373
ORF1ab/nsp320S20GAgtGgt5858B.1.1770.000764
ORF1ab/nsp320S20delAGT---5757All0.000011
ORF1ab/nsp320S20RagTagA1540All0.000003
ORF1ab/nsp320S20RAgtCgt1540All0.000003
ORF1ab/nsp320S20RagTagG1040All0.000002
ORF1ab/nsp320S20IaGtaTt3838B.1.258.150.716981
ORF1ab/nsp320S20SagTagC2525B.1.1.70.000022
ORF1ab/nsp320S20IaGtaTt2121B.1.617.10.002708
ORF1ab/nsp320S20NaGtaAt1818AY.790.021792
ORF1ab/nsp320S20SagTagC1818P.10.000284
ORF1ab/nsp320S20NaGtaAt1515B.1.1.70.000013
ORF1ab/nsp320S20SagTagC1414AY.70.002744
ORF1ab/nsp320S20IaGtaTt1212B.1.1.70.000011
ORF1ab/nsp320S20RAgtCgt711B.1.1.70.000006
ORF1ab/nsp320S20RagTagA311B.1.1.70.000003
ORF1ab/nsp320S20RagTagG111B.1.1.70.000001
ORF1ab/nsp320S20SagTagC1111B.1.4270.000555
ORF1ab/nsp320S20GAgtGgt1111B.1.617.20.000041
ORF1ab/nsp320S20GAgtGgt1010B.1.1.70.000009
ORF1ab/nsp320S20IaGtaTt1010B.1.4290.000235
ORF1ab/nsp320S20del1agTag-89All0.000002
ORF1ab/nsp320S20del1aGta-t19All0
ORF1ab/nsp320S20NaGtaAt99B.1.4270.000454
ORF1ab/nsp320S20NaGtaAt99B.1.6370.000658
ORF1ab/nsp320S20CAgtTgt88All0.000002
ORF1ab/nsp320S20GAgtGgt88AY.440.000049
ORF1ab/nsp320S20delAGT---88B.10.000073
ORF1ab/nsp320S20IaGtaTt88B.1.5610.003176
ORF1ab/nsp320S20SagTagC88B.1.617.20.00003
ORF1ab/nsp320S20IaGtaTt77AY.40.000011
ORF1ab/nsp320S20IaGtaTt66AY.1030.000037
ORF1ab/nsp320S20delAGT---66B.1.1.70.000005
ORF1ab/nsp320S20NaGtaAt66P.10.000095
ORF1ab/nsp320S20RagTagA35B.10.000027
ORF1ab/nsp320S20RagTagG25B.10.000018
ORF1ab/nsp320S20SagTagC55B.1.3490.003574
ORF1ab/nsp320S20IaGtaTt55B.1.617.20.000019
ORF1ab/nsp320S20delAGT---440.222222
ORF1ab/nsp320S20TaGtaCt34All0.000001
ORF1ab/nsp320S20TaGTaCA14All0
ORF1ab/nsp320S20IaGtaTt44AY.430.000018
ORF1ab/nsp320S20IaGtaTt44B.1.1770.000053
ORF1ab/nsp320S20IaGtaTt44B.1.5260.000094
ORF1ab/nsp320S20IaGtaTt33AY.250.000018
ORF1ab/nsp320S20NaGtaAt33AY.250.000018
ORF1ab/nsp320S20NaGtaAt33AY.30.00003
ORF1ab/nsp320S20IaGtaTt33AY.330.0002
ORF1ab/nsp320S20RAgtCgt23AY.40.000003
ORF1ab/nsp320S20RagTagG13AY.40.000002
ORF1ab/nsp320S20GAgtGgt33AY.430.000013
ORF1ab/nsp320S20RAgtCgt23AY.430.000009
ORF1ab/nsp320S20RagTagG13AY.430.000004
ORF1ab/nsp320S20IaGtaTt33B.10.000027
ORF1ab/nsp320S20delAGT---33B.1.10.000054
ORF1ab/nsp320S20delAGT---33B.1.1.330.001263
ORF1ab/nsp320S20delAGT---33B.1.1770.00004
ORF1ab/nsp320S20del1agTag-33B.1.20.000026
ORF1ab/nsp320S20delAGT---33B.1.4290.000071
ORF1ab/nsp320S20delAGT---33P.10.000047
ORF1ab/nsp320S20del2aGTa--22All0
ORF1ab/nsp320S20NaGtaAt22AY.1020.000053
ORF1ab/nsp320S20NaGtaAt22AY.1190.000071
ORF1ab/nsp320S20GAgtGgt22AY.300.000791
ORF1ab/nsp320S20IaGtaTt22AY.390.000049
ORF1ab/nsp320S20SagTagC22AY.40.000003
ORF1ab/nsp320S20GAgtGgt22AY.40.000003
ORF1ab/nsp320S20IaGtaTt22AY.4.10.001475
ORF1ab/nsp320S20NaGtaAt22AY.430.000009
ORF1ab/nsp320S20del1agTag-22AY.440.000012
ORF1ab/nsp320S20NaGtaAt22B.1.10.000036
ORF1ab/nsp320S20IaGtaTt22B.1.10.000036
ORF1ab/nsp320S20delAGT---22B.1.1.3150.016949
ORF1ab/nsp320S20delAGT---22B.1.1.3480.001592
ORF1ab/nsp320S20CAgtTgt22B.1.1.70.000002
ORF1ab/nsp320S20IaGtaTt22B.1.177.120.000303
ORF1ab/nsp320S20GAgtGgt22B.1.177.70.00033
ORF1ab/nsp320S20RagTagG12B.1.20.000009
ORF1ab/nsp320S20RagTagA12B.1.20.000009
ORF1ab/nsp320S20RagTagG12B.1.2580.000067
ORF1ab/nsp320S20RagTagA12B.1.2580.000067
ORF1ab/nsp320S20delAGT---22B.1.4240.016129
ORF1ab/nsp320S20NaGtaAt22B.1.5750.000607
ORF1ab/nsp320S20TaGtaCt22B.1.5960.000174
ORF1ab/nsp320S20NaGtaAt22B.1.6180.008065
ORF1ab/nsp320S20RagTagA22D.20.00015
ORF1ab/nsp320S20delAGT---22N.60.014184
ORF1ab/nsp320S20IaGtaTt22P.10.000032
ORF1ab/nsp320S20GAgtGgt110.055556
ORF1ab/nsp320S20VAGtGTt110.055556
ORF1ab/nsp320S20IaGtaTt110.055556
ORF1ab/nsp320S20TaGtaCt11A.2.50.000499
ORF1ab/nsp320S20MaGTaTG11All0
ORF1ab/nsp320S20DAGtGAt11All0
ORF1ab/nsp320S20VAGtGTt11All0
ORF1ab/nsp320S20IaGtaTt11AY.1010.00049
ORF1ab/nsp320S20RAgtCgt11AY.1020.000027
ORF1ab/nsp320S20GAgtGgt11AY.1020.000027
ORF1ab/nsp320S20TaGTaCA11AY.1030.000006
ORF1ab/nsp320S20RAgtCgt11AY.1030.000006
ORF1ab/nsp320S20delAGT---11AY.1030.000006
ORF1ab/nsp320S20delAGT---11AY.1110.000183
ORF1ab/nsp320S20IaGtaTt11AY.1110.000183
ORF1ab/nsp320S20RagTagG11AY.1130.000142
ORF1ab/nsp320S20IaGtaTt11AY.1200.000037
ORF1ab/nsp320S20delAGT---11AY.190.00114
ORF1ab/nsp320S20IaGtaTt11AY.20.000356
ORF1ab/nsp320S20CAgtTgt11AY.200.000039
ORF1ab/nsp320S20GAgtGgt11AY.200.000039
ORF1ab/nsp320S20SagTagC11AY.230.00007
ORF1ab/nsp320S20RagTagG11AY.260.000028
ORF1ab/nsp320S20SagTagC11AY.260.000028
ORF1ab/nsp320S20CAgtTgt11AY.290.000016
ORF1ab/nsp320S20IaGtaTt11AY.30.00001
ORF1ab/nsp320S20GAgtGgt11AY.30.00001
ORF1ab/nsp320S20GAgtGgt11AY.3.10.000085
ORF1ab/nsp320S20SagTagC11AY.340.000097
ORF1ab/nsp320S20SagTagC11AY.390.000025
ORF1ab/nsp320S20RAgtCgt11AY.390.000025
ORF1ab/nsp320S20CAgtTgt11AY.40.000002
ORF1ab/nsp320S20delAGT---11AY.400.000964
ORF1ab/nsp320S20RagTagA11AY.420.00004
ORF1ab/nsp320S20SagTagC11AY.430.000004
ORF1ab/nsp320S20del1agTag-11AY.430.000004
ORF1ab/nsp320S20NaGtaAt11AY.440.000006
ORF1ab/nsp320S20SagTagC11AY.440.000006
ORF1ab/nsp320S20MaGTaTG11AY.440.000006
ORF1ab/nsp320S20del1agTag-11AY.46.20.000635
ORF1ab/nsp320S20SagTagC11AY.470.000031
ORF1ab/nsp320S20SagTagC11AY.50.000021
ORF1ab/nsp320S20SagTagC11AY.580.000907
ORF1ab/nsp320S20delAGT---11AY.60.000041
ORF1ab/nsp320S20delAGT---11AY.680.000274
ORF1ab/nsp320S20RagTagA11AY.740.000116
ORF1ab/nsp320S20SagTagC11AY.750.000056
ORF1ab/nsp320S20NaGtaAt11AY.9.10.000084
ORF1ab/nsp320S20IaGtaTt11AY.980.000079
ORF1ab/nsp320S20delAGT---11AY.98.10.000048
ORF1ab/nsp320S20GAgtGgt11AY.98.10.000048
ORF1ab/nsp320S20SagTagC11B.10.000009
ORF1ab/nsp320S20del1aGta-t11B.10.000009
ORF1ab/nsp320S20GAgtGgt11B.10.000009
ORF1ab/nsp320S20SagTagC11B.1.1.1860.003436
ORF1ab/nsp320S20NaGtaAt11B.1.1.2890.002083
ORF1ab/nsp320S20SagTagC11B.1.1.3170.000412
ORF1ab/nsp320S20delAGT---11B.1.1.4160.000905
ORF1ab/nsp320S20DAGtGAt11B.1.1.460.004367
ORF1ab/nsp320S20delAGT---11B.1.1.460.004367
ORF1ab/nsp320S20GAgtGgt11B.1.1.5190.00004
ORF1ab/nsp320S20del2aGTa--11B.1.1.70.000001
ORF1ab/nsp320S20delAGT---11B.1.1.700.000341
ORF1ab/nsp320S20CAgtTgt11B.1.1420.002899
ORF1ab/nsp320S20RagTagA11B.1.1600.000031
ORF1ab/nsp320S20GAgtGgt11B.1.160.300.002976
ORF1ab/nsp320S20NaGtaAt11B.1.1660.008475
ORF1ab/nsp320S20NaGtaAt11B.1.1770.000013
ORF1ab/nsp320S20GAgtGgt11B.1.177.150.000631
ORF1ab/nsp320S20CAgtTgt11B.1.177.210.000076
ORF1ab/nsp320S20IaGtaTt11B.1.177.430.001477
ORF1ab/nsp320S20delAGT---11B.1.177.510.004566
ORF1ab/nsp320S20RagTagA11B.1.177.70.000165
ORF1ab/nsp320S20del2aGTa--11B.1.20.000009
ORF1ab/nsp320S20NaGtaAt11B.1.20.000009
ORF1ab/nsp320S20GAgtGgt11B.1.20.000009
ORF1ab/nsp320S20SagTagC11B.1.20.000009
ORF1ab/nsp320S20IaGtaTt11B.1.20.000009
ORF1ab/nsp320S20IaGtaTt11B.1.2340.000132
ORF1ab/nsp320S20RagTagA11B.1.360.000146
ORF1ab/nsp320S20RagTagG11B.1.4290.000024
ORF1ab/nsp320S20IaGtaTt11B.1.466.20.000391
ORF1ab/nsp320S20NaGtaAt11B.1.4700.001404
ORF1ab/nsp320S20NaGtaAt11B.1.5050.004386
ORF1ab/nsp320S20SagTagC11B.1.5260.000024
ORF1ab/nsp320S20delAGT---11B.1.5260.000024
ORF1ab/nsp320S20delAGT---11B.1.5610.000397
ORF1ab/nsp320S20SagTagC11B.1.5750.000303
ORF1ab/nsp320S20RAgtCgt11B.1.617.20.000004
ORF1ab/nsp320S20CAgtTgt11B.1.617.20.000004
ORF1ab/nsp320S20del1agTag-11B.1.617.20.000004
ORF1ab/nsp320S20NaGtaAt11B.1.617.20.000004
ORF1ab/nsp320S20delAGT---11B.1.621.10.000506
ORF1ab/nsp320S20IaGtaTt11B.40.002208
ORF1ab/nsp320S20NaGtaAt11B.550.00295
ORF1ab/nsp320S20delAGT---11B.570.015152
ORF1ab/nsp320S20IaGtaTt11B.6.10.026316
ORF1ab/nsp320S20IaGtaTt11D.20.000075
ORF1ab/nsp320S20NaGtaAt11D.20.000075
ORF1ab/nsp320S20SagTagC11N.60.007092
ORF1ab/nsp320S20delAGT---11P.1.150.000232
ORF1ab/nsp320S20IaGtaTt11Q.10.000126
ORF1ab/nsp320S20NaGtaAt11Q.80.000165
ORF1ab/nsp320S20SagTagC11R.10.00009