CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 196 & Codon = atC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3196M196IM1014InonsynatGatC1696360.02122643305-3307

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3196M196IatGatC361696All0.000007
ORF1ab/nsp3196M196IatGatC11118B.1.1.70.00001
ORF1ab/nsp3196M196IatGatC150AY.40.000002
ORF1ab/nsp3196M196IatGatC140AY.1030.000006
ORF1ab/nsp3196M196IatGatC138B.1.617.20.000004
ORF1ab/nsp3196M196IatGatC329B.1.20.000026
ORF1ab/nsp3196M196IatGatC88B.1.438.10.000858
ORF1ab/nsp3196M196IatGatC14AY.90.000068
ORF1ab/nsp3196M196IatGatC14B.1.1770.000013
ORF1ab/nsp3196M196IatGatC130.055556
ORF1ab/nsp3196M196IatGatC23B.1.1.3060.000877
ORF1ab/nsp3196M196IatGatC12B0.000128
ORF1ab/nsp3196M196IatGatC22B.1.1.500.001358
ORF1ab/nsp3196M196IatGatC12C.160.00106
ORF1ab/nsp3196M196IatGatC11AY.840.000437
ORF1ab/nsp3196M196IatGatC11B.1.177.120.000152

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.