CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1897

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31897V1897IV2715InonsynGttAtt6596530.9908958408-8410
ORF1ab/nsp31897V1897IV2715InonsynGtTAtA65950.007587258408-8410
ORF1ab/nsp31897V1897IV2715InonsynGtTAtC65910.001517458408-8410
ORF1ab/nsp31897V1897VV2715VsyngtTgtC4484060.906258408-8410
ORF1ab/nsp31897V1897VV2715VsyngtTgtA448220.04910718408-8410
ORF1ab/nsp31897V1897VV2715VsyngtTgtG448200.04464298408-8410
ORF1ab/nsp31897V1897AV2715AnonsyngTtgCt17417418408-8410
ORF1ab/nsp31897V1897delV2715deldelGTT---15915918408-8410
ORF1ab/nsp31897V1897FV2715FnonsynGttTtt13613618408-8410
ORF1ab/nsp31897V1897LV2715LnonsynGttCtt6618408-8410
ORF1ab/nsp31897V1897GV2715GnonsyngTtgGt640.6666678408-8410
ORF1ab/nsp31897V1897GV2715GnonsyngTTgGA620.3333338408-8410
ORF1ab/nsp31897V1897del1V2715del1delGtt-tt420.58408-8410
ORF1ab/nsp31897V1897del1V2715del1delgtTgt-410.258408-8410
ORF1ab/nsp31897V1897del1V2715del1delgTTg-A410.258408-8410
ORF1ab/nsp31897V1897HV2715HnonsynGTTCAC2218408-8410
ORF1ab/nsp31897V1897SV2715SnonsynGTtAGt1118408-8410
ORF1ab/nsp31897V1897del2V2715del2delGTt--t1118408-8410
ORF1ab/nsp31897V1897DV2715DnonsyngTtgAt1118408-8410
ORF1ab/nsp31897V1897CV2715CnonsynGTtTGt1118408-8410

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31897V1897IGttAtt653659All0.000125
ORF1ab/nsp31897V1897IGtTAtA5659All0.000001
ORF1ab/nsp31897V1897IGtTAtC1659All0
ORF1ab/nsp31897V1897VgtTgtC406448All0.000078
ORF1ab/nsp31897V1897VgtTgtA22448All0.000004
ORF1ab/nsp31897V1897VgtTgtG20448All0.000004
ORF1ab/nsp31897V1897AgTtgCt174174All0.000033
ORF1ab/nsp31897V1897VgtTgtC174174B.1.36.281
ORF1ab/nsp31897V1897VgtTgtC170170B.1.1770.002238
ORF1ab/nsp31897V1897delGTT---159159All0.00003
ORF1ab/nsp31897V1897FGttTtt136136All0.000026
ORF1ab/nsp31897V1897AgTtgCt133133AY.40.000207
ORF1ab/nsp31897V1897IGttAtt7677B.1.617.20.000286
ORF1ab/nsp31897V1897IGtTAtC177B.1.617.20.000004
ORF1ab/nsp31897V1897IGttAtt7676B.1.1.2180.584615
ORF1ab/nsp31897V1897FGttTtt6868AY.40.000106
ORF1ab/nsp31897V1897IGttAtt5555P.20.010265
ORF1ab/nsp31897V1897delGTT---5454B.1.1.70.000048
ORF1ab/nsp31897V1897IGttAtt4848B.1.1.70.000043
ORF1ab/nsp31897V1897IGttAtt3232B.1.177.40.006754
ORF1ab/nsp31897V1897IGttAtt3232P.1.70.010217
ORF1ab/nsp31897V1897IGttAtt2929AY.40.000045
ORF1ab/nsp31897V1897IGttAtt2828B.1.1.720.848485
ORF1ab/nsp31897V1897FGttTtt2424B.1.617.20.00009
ORF1ab/nsp31897V1897IGttAtt2323AY.430.000102
ORF1ab/nsp31897V1897IGttAtt2020B.1.6370.001461
ORF1ab/nsp31897V1897IGttAtt1818B.1.36.330.136364
ORF1ab/nsp31897V1897IGttAtt1414AY.250.000084
ORF1ab/nsp31897V1897VgtTgtC1414AY.440.000085
ORF1ab/nsp31897V1897IGttAtt1313B.1.160.290.054852
ORF1ab/nsp31897V1897IGttAtt1212AY.290.000189
ORF1ab/nsp31897V1897IGttAtt1112B.1.20.000097
ORF1ab/nsp31897V1897IGtTAtA112B.1.20.000009
ORF1ab/nsp31897V1897IGttAtt1111AY.260.000311
ORF1ab/nsp31897V1897IGttAtt1111AY.30.000109
ORF1ab/nsp31897V1897IGttAtt1111B.10.000101
ORF1ab/nsp31897V1897VgtTgtG1010B0.001278
ORF1ab/nsp31897V1897delGTT---1010B.10.000092
ORF1ab/nsp31897V1897VgtTgtC610P.1.150.001394
ORF1ab/nsp31897V1897VgtTgtA410P.1.150.000929
ORF1ab/nsp31897V1897IGttAtt99AY.1030.000056
ORF1ab/nsp31897V1897IGttAtt99AY.1210.001218
ORF1ab/nsp31897V1897delGTT---88AY.4.50.00086
ORF1ab/nsp31897V1897VgtTgtC68B.1.1.70.000005
ORF1ab/nsp31897V1897VgtTgtA28B.1.1.70.000002
ORF1ab/nsp31897V1897IGttAtt88B.1.1770.000105
ORF1ab/nsp31897V1897VgtTgtG88B.1.258.170.000832
ORF1ab/nsp31897V1897delGTT---77B.1.1770.000092
ORF1ab/nsp31897V1897LGttCtt66All0.000001
ORF1ab/nsp31897V1897GgTtgGt46All0.000001
ORF1ab/nsp31897V1897GgTTgGA26All0
ORF1ab/nsp31897V1897IGttAtt66AY.230.000418
ORF1ab/nsp31897V1897VgtTgtC66AY.40.000009
ORF1ab/nsp31897V1897IGttAtt66B.1.2580.000399
ORF1ab/nsp31897V1897IGttAtt55AY.1130.000712
ORF1ab/nsp31897V1897FGttTtt55B.1.1.70.000004
ORF1ab/nsp31897V1897VgtTgtC55B.1.360.00073
ORF1ab/nsp31897V1897AgTtgCt55C.36.30.002836
ORF1ab/nsp31897V1897del1Gtt-tt24All0
ORF1ab/nsp31897V1897del1gtTgt-14All0
ORF1ab/nsp31897V1897del1gTTg-A14All0
ORF1ab/nsp31897V1897IGttAtt44AY.1020.000106
ORF1ab/nsp31897V1897VgtTgtA24AY.1030.000012
ORF1ab/nsp31897V1897VgtTgtC24AY.1030.000012
ORF1ab/nsp31897V1897IGttAtt44AY.390.000099
ORF1ab/nsp31897V1897delGTT---44AY.40.000006
ORF1ab/nsp31897V1897delGTT---44AY.430.000018
ORF1ab/nsp31897V1897IGttAtt44AY.460.000416
ORF1ab/nsp31897V1897IGttAtt44AY.60.000165
ORF1ab/nsp31897V1897AgTtgCt44AY.9.20.000147
ORF1ab/nsp31897V1897AgTtgCt44B.10.000037
ORF1ab/nsp31897V1897VgtTgtC24B.10.000018
ORF1ab/nsp31897V1897VgtTgtA24B.10.000018
ORF1ab/nsp31897V1897IGttAtt44B.1.10.000073
ORF1ab/nsp31897V1897delGTT---44B.1.10.000073
ORF1ab/nsp31897V1897IGttAtt44B.1.1.4640.005891
ORF1ab/nsp31897V1897AgTtgCt44B.1.1.70.000004
ORF1ab/nsp31897V1897delGTT---44C.370.000464
ORF1ab/nsp31897V1897FGttTtt44D.20.0003
ORF1ab/nsp31897V1897delGTT---44P.10.000063
ORF1ab/nsp31897V1897FGttTtt33AY.1030.000019
ORF1ab/nsp31897V1897IGttAtt33AY.1170.000254
ORF1ab/nsp31897V1897IGttAtt33AY.140.000264
ORF1ab/nsp31897V1897VgtTgtC33AY.30.00003
ORF1ab/nsp31897V1897IGttAtt33AY.920.000862
ORF1ab/nsp31897V1897IGttAtt33AY.98.10.000145
ORF1ab/nsp31897V1897VgtTgtC23B.1.10.000036
ORF1ab/nsp31897V1897VgtTgtA13B.1.10.000018
ORF1ab/nsp31897V1897AgTtgCt33B.1.1.2140.000166
ORF1ab/nsp31897V1897IGttAtt33B.1.1.280.000934
ORF1ab/nsp31897V1897AgTtgCt33B.1.20.000026
ORF1ab/nsp31897V1897FGttTtt33B.1.20.000026
ORF1ab/nsp31897V1897delGTT---33B.1.20.000026
ORF1ab/nsp31897V1897IGttAtt33B.1.3510.000089
ORF1ab/nsp31897V1897IGttAtt33B.1.930.002801
ORF1ab/nsp31897V1897IGttAtt33P.10.000047
ORF1ab/nsp31897V1897delGTT---33P.1.150.000697
ORF1ab/nsp31897V1897HGTTCAC220.111111
ORF1ab/nsp31897V1897delGTT---220.111111
ORF1ab/nsp31897V1897IGtTAtA220.111111
ORF1ab/nsp31897V1897delGTT---22AD.20.000438
ORF1ab/nsp31897V1897HGTTCAC22All0
ORF1ab/nsp31897V1897FGttTtt22AY.1110.000366
ORF1ab/nsp31897V1897delGTT---22AY.1190.000071
ORF1ab/nsp31897V1897IGttAtt22AY.200.000078
ORF1ab/nsp31897V1897FGttTtt22AY.200.000078
ORF1ab/nsp31897V1897VgtTgtC12AY.230.00007
ORF1ab/nsp31897V1897VgtTgtA12AY.230.00007
ORF1ab/nsp31897V1897delGTT---22AY.250.000012
ORF1ab/nsp31897V1897AgTtgCt22AY.30.00002
ORF1ab/nsp31897V1897FGttTtt22AY.320.001065
ORF1ab/nsp31897V1897FGttTtt22AY.390.000049
ORF1ab/nsp31897V1897LGttCtt22AY.40.000003
ORF1ab/nsp31897V1897VgtTgtC22AY.900.001369
ORF1ab/nsp31897V1897delGTT---22AZ.20.001642
ORF1ab/nsp31897V1897FGttTtt22B.10.000018
ORF1ab/nsp31897V1897GgTtgGt12B.10.000009
ORF1ab/nsp31897V1897GgTTgGA12B.10.000009
ORF1ab/nsp31897V1897delGTT---22B.1.1.2360.013793
ORF1ab/nsp31897V1897delGTT---22B.1.1.3110.000716
ORF1ab/nsp31897V1897delGTT---22B.1.177.630.005405
ORF1ab/nsp31897V1897IGttAtt22B.1.258.70.003824
ORF1ab/nsp31897V1897IGttAtt22B.1.2980.004228
ORF1ab/nsp31897V1897delGTT---22B.1.36.170.000988
ORF1ab/nsp31897V1897IGttAtt22B.1.5950.000522
ORF1ab/nsp31897V1897IGttAtt22B.1.617.10.000258
ORF1ab/nsp31897V1897delGTT---22B.1.617.20.000008
ORF1ab/nsp31897V1897VgtTgtA12B.1.617.20.000004
ORF1ab/nsp31897V1897VgtTgtC12B.1.617.20.000004
ORF1ab/nsp31897V1897GgTtgGt12B.1.617.20.000004
ORF1ab/nsp31897V1897GgTTgGA12B.1.617.20.000004
ORF1ab/nsp31897V1897IGttAtt22P.1.80.009569
ORF1ab/nsp31897V1897FGttTtt11A.10.000282
ORF1ab/nsp31897V1897LGttCtt11A.2.40.003367
ORF1ab/nsp31897V1897VgtTgtA11AD.20.000219
ORF1ab/nsp31897V1897DgTtgAt11All0
ORF1ab/nsp31897V1897CGTtTGt11All0
ORF1ab/nsp31897V1897del2GTt--t11All0
ORF1ab/nsp31897V1897SGTtAGt11All0
ORF1ab/nsp31897V1897VgtTgtA11AU.10.001266
ORF1ab/nsp31897V1897VgtTgtG11AY.1000.000046
ORF1ab/nsp31897V1897VgtTgtC11AY.1020.000027
ORF1ab/nsp31897V1897AgTtgCt11AY.1030.000006
ORF1ab/nsp31897V1897delGTT---11AY.1110.000183
ORF1ab/nsp31897V1897FGttTtt11AY.1130.000142
ORF1ab/nsp31897V1897IGttAtt11AY.1160.000287
ORF1ab/nsp31897V1897FGttTtt11AY.1170.000085
ORF1ab/nsp31897V1897AgTtgCt11AY.1190.000035
ORF1ab/nsp31897V1897IGttAtt11AY.1190.000035
ORF1ab/nsp31897V1897IGttAtt11AY.120.000316
ORF1ab/nsp31897V1897delGTT---11AY.1200.000037
ORF1ab/nsp31897V1897AgTtgCt11AY.1200.000037
ORF1ab/nsp31897V1897VgtTgtC11AY.1200.000037
ORF1ab/nsp31897V1897IGttAtt11AY.130.000161
ORF1ab/nsp31897V1897AgTtgCt11AY.200.000039
ORF1ab/nsp31897V1897AgTtgCt11AY.23.10.000417
ORF1ab/nsp31897V1897VgtTgtC11AY.23.10.000417
ORF1ab/nsp31897V1897IGttAtt11AY.23.10.000417
ORF1ab/nsp31897V1897VgtTgtC11AY.250.000006
ORF1ab/nsp31897V1897VgtTgtC11AY.260.000028
ORF1ab/nsp31897V1897FGttTtt11AY.30.00001
ORF1ab/nsp31897V1897IGttAtt11AY.330.000067
ORF1ab/nsp31897V1897delGTT---11AY.330.000067
ORF1ab/nsp31897V1897FGttTtt11AY.360.000148
ORF1ab/nsp31897V1897AgTtgCt11AY.390.000025
ORF1ab/nsp31897V1897FGttTtt11AY.39.10.00004
ORF1ab/nsp31897V1897GgTtgGt11AY.40.000002
ORF1ab/nsp31897V1897VgtTgtA11AY.4.20.000022
ORF1ab/nsp31897V1897IGttAtt11AY.4.50.000107
ORF1ab/nsp31897V1897FGttTtt11AY.420.00004
ORF1ab/nsp31897V1897IGttAtt11AY.420.00004
ORF1ab/nsp31897V1897FGttTtt11AY.430.000004
ORF1ab/nsp31897V1897VgtTgtC11AY.430.000004
ORF1ab/nsp31897V1897FGttTtt11AY.440.000006
ORF1ab/nsp31897V1897IGttAtt11AY.440.000006
ORF1ab/nsp31897V1897IGttAtt11AY.450.000122
ORF1ab/nsp31897V1897VgtTgtC11AY.460.000104
ORF1ab/nsp31897V1897FGttTtt11AY.46.60.000072
ORF1ab/nsp31897V1897delGTT---11AY.46.60.000072
ORF1ab/nsp31897V1897AgTtgCt11AY.470.000031
ORF1ab/nsp31897V1897IGttAtt11AY.490.003195
ORF1ab/nsp31897V1897del1Gtt-tt11AY.50.000021
ORF1ab/nsp31897V1897IGttAtt11AY.50.000021
ORF1ab/nsp31897V1897delGTT---11AY.50.000021
ORF1ab/nsp31897V1897VgtTgtA11AY.590.00053
ORF1ab/nsp31897V1897delGTT---11AY.600.000938
ORF1ab/nsp31897V1897FGttTtt11AY.610.000105
ORF1ab/nsp31897V1897delGTT---11AY.610.000105
ORF1ab/nsp31897V1897IGttAtt11AY.620.000436
ORF1ab/nsp31897V1897del1Gtt-tt11AY.670.000464
ORF1ab/nsp31897V1897AgTtgCt11AY.690.000187
ORF1ab/nsp31897V1897delGTT---11AY.720.001361
ORF1ab/nsp31897V1897IGttAtt11AY.740.000116
ORF1ab/nsp31897V1897IGttAtt11AY.750.000056
ORF1ab/nsp31897V1897IGttAtt11AY.75.10.00018
ORF1ab/nsp31897V1897IGttAtt11AY.80.000606
ORF1ab/nsp31897V1897delGTT---11AY.810.001992
ORF1ab/nsp31897V1897IGtTAtA11AY.840.000437
ORF1ab/nsp31897V1897IGttAtt11AY.850.000427
ORF1ab/nsp31897V1897delGTT---11AY.90.000068
ORF1ab/nsp31897V1897AgTtgCt11AY.90.000068
ORF1ab/nsp31897V1897FGttTtt11AY.940.000443
ORF1ab/nsp31897V1897delGTT---11AY.990.001049
ORF1ab/nsp31897V1897IGttAtt11B0.000128
ORF1ab/nsp31897V1897DgTtgAt11B.10.000009
ORF1ab/nsp31897V1897FGttTtt11B.1.10.000018
ORF1ab/nsp31897V1897FGttTtt11B.1.1.1170.009709
ORF1ab/nsp31897V1897VgtTgtC11B.1.1.1760.000439
ORF1ab/nsp31897V1897VgtTgtG11B.1.1.1940.00495
ORF1ab/nsp31897V1897IGttAtt11B.1.1.2220.000204
ORF1ab/nsp31897V1897delGTT---11B.1.1.3060.000438
ORF1ab/nsp31897V1897VgtTgtA11B.1.1.390.00051
ORF1ab/nsp31897V1897delGTT---11B.1.1.4090.002833
ORF1ab/nsp31897V1897IGttAtt11B.1.1.480.002874
ORF1ab/nsp31897V1897LGttCtt11B.1.1.70.000001
ORF1ab/nsp31897V1897FGttTtt11B.1.1.700.000341
ORF1ab/nsp31897V1897IGttAtt11B.1.1600.000031
ORF1ab/nsp31897V1897delGTT---11B.1.177.150.000631
ORF1ab/nsp31897V1897delGTT---11B.1.177.180.00116
ORF1ab/nsp31897V1897delGTT---11B.1.177.190.001431
ORF1ab/nsp31897V1897delGTT---11B.1.177.210.000076
ORF1ab/nsp31897V1897del2GTt--t11B.1.177.210.000076
ORF1ab/nsp31897V1897delGTT---11B.1.177.40.000211
ORF1ab/nsp31897V1897delGTT---11B.1.177.50.001242
ORF1ab/nsp31897V1897delGTT---11B.1.177.510.004566
ORF1ab/nsp31897V1897delGTT---11B.1.177.540.000606
ORF1ab/nsp31897V1897FGttTtt11B.1.177.70.000165
ORF1ab/nsp31897V1897delGTT---11B.1.177.730.000566
ORF1ab/nsp31897V1897IGttAtt11B.1.177.740.015152
ORF1ab/nsp31897V1897delGTT---11B.1.177.830.001481
ORF1ab/nsp31897V1897delGTT---11B.1.177.90.001332
ORF1ab/nsp31897V1897delGTT---11B.1.1790.003759
ORF1ab/nsp31897V1897VgtTgtA11B.1.1920.009259
ORF1ab/nsp31897V1897VgtTgtC11B.1.20.000009
ORF1ab/nsp31897V1897AgTtgCt11B.1.2210.000071
ORF1ab/nsp31897V1897del1gtTgt-11B.1.2230.002778
ORF1ab/nsp31897V1897del1gTTg-A11B.1.2340.000132
ORF1ab/nsp31897V1897IGtTAtA11B.1.2340.000132
ORF1ab/nsp31897V1897delGTT---11B.1.2430.00007
ORF1ab/nsp31897V1897delGTT---11B.1.258.30.001675
ORF1ab/nsp31897V1897AgTtgCt11B.1.3510.00003
ORF1ab/nsp31897V1897delGTT---11B.1.36.180.00042
ORF1ab/nsp31897V1897delGTT---11B.1.36.380.001642
ORF1ab/nsp31897V1897AgTtgCt11B.1.3690.000285
ORF1ab/nsp31897V1897IGttAtt11B.1.3990.001934
ORF1ab/nsp31897V1897VgtTgtC11B.1.4080.00369
ORF1ab/nsp31897V1897IGttAtt11B.1.4290.000024
ORF1ab/nsp31897V1897VgtTgtC11B.1.4290.000024
ORF1ab/nsp31897V1897LGttCtt11B.1.4290.000024
ORF1ab/nsp31897V1897GgTtgGt11B.1.4290.000024
ORF1ab/nsp31897V1897AgTtgCt11B.1.4970.000315
ORF1ab/nsp31897V1897CGTtTGt11B.1.4970.000315
ORF1ab/nsp31897V1897VgtTgtA11B.1.5240.001406
ORF1ab/nsp31897V1897VgtTgtA11B.1.5260.000024
ORF1ab/nsp31897V1897IGttAtt11B.1.5260.000024
ORF1ab/nsp31897V1897AgTtgCt11B.1.5660.019231
ORF1ab/nsp31897V1897VgtTgtA11B.1.5950.000261
ORF1ab/nsp31897V1897delGTT---11B.1.5960.000087
ORF1ab/nsp31897V1897FGttTtt11B.1.6090.000479
ORF1ab/nsp31897V1897AgTtgCt11B.1.617.20.000004
ORF1ab/nsp31897V1897delGTT---11B.1.6210.000089
ORF1ab/nsp31897V1897IGttAtt11B.1.9.50.005682
ORF1ab/nsp31897V1897FGttTtt11B.400.000364
ORF1ab/nsp31897V1897FGttTtt11B.550.00295
ORF1ab/nsp31897V1897VgtTgtC11B.6.60.000889
ORF1ab/nsp31897V1897LGttCtt11C.170.055556
ORF1ab/nsp31897V1897IGttAtt11C.350.000774
ORF1ab/nsp31897V1897SGTtAGt11C.350.000774
ORF1ab/nsp31897V1897IGttAtt11L.20.011364
ORF1ab/nsp31897V1897AgTtgCt11P.10.000016
ORF1ab/nsp31897V1897IGttAtt11P.1.150.000232
ORF1ab/nsp31897V1897delGTT---11P.1.70.000319
ORF1ab/nsp31897V1897delGTT---11Q.10.000126
ORF1ab/nsp31897V1897delGTT---11U.30.003861