CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1884 | Q1884H | Q2702H | nonsyn | caG | caT | 8454 | 8436 | 0.997871 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884H | Q2702H | nonsyn | caG | caC | 8454 | 18 | 0.00212917 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884Q | Q2702Q | syn | caG | caA | 377 | 377 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884del | Q2702del | del | CAG | --- | 179 | 179 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884X | Q2702X | nonsyn | Cag | Tag | 13 | 12 | 0.923077 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884X | Q2702X | nonsyn | CaG | TaA | 13 | 1 | 0.0769231 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884R | Q2702R | nonsyn | cAg | cGg | 6 | 6 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884L | Q2702L | nonsyn | cAg | cTg | 6 | 6 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884K | Q2702K | nonsyn | Cag | Aag | 6 | 4 | 0.666667 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884K | Q2702K | nonsyn | CaG | AaA | 6 | 2 | 0.333333 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884del1 | Q2702del1 | del | Cag | -ag | 3 | 2 | 0.666667 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884del1 | Q2702del1 | del | caG | ca- | 3 | 1 | 0.333333 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884P | Q2702P | nonsyn | cAg | cCg | 2 | 2 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884E | Q2702E | nonsyn | Cag | Gag | 2 | 2 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884del2 | Q2702del2 | del | cAG | c-- | 2 | 1 | 0.5 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884del2 | Q2702del2 | del | CAg | --g | 2 | 1 | 0.5 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884A | Q2702A | nonsyn | CAg | GCg | 1 | 1 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884N | Q2702N | nonsyn | CaG | AaC | 1 | 1 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884T | Q2702T | nonsyn | CAg | ACg | 1 | 1 | 1 | 8369-8371 |
ORF1ab/nsp3 | 1884 | Q1884Y | Q2702Y | nonsyn | CaG | TaC | 1 | 1 | 1 | 8369-8371 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 8436 | 8454 | All | 0.001613 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 18 | 8454 | All | 0.000003 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3143 | 3143 | B.1.1.214 | 0.174301 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1855 | 1855 | B.1 | 0.016991 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 990 | 994 | B.1.389 | 0.991984 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 4 | 994 | B.1.389 | 0.004008 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 877 | 880 | B.1.1.7 | 0.000785 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 3 | 880 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 377 | 377 | All | 0.000072 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 182 | 182 | AY.4 | 0.000283 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 179 | 179 | All | 0.000034 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 151 | 151 | B.1.617.2 | 0.000569 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 106 | 106 | AY.103 | 0.000658 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 100 | 100 | B.1.1.101 | 1 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 86 | 86 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 82 | 82 | B.1.159 | 1 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 73 | 73 | B.1.617.1 | 0.009414 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 68 | 69 | AY.43 | 0.000301 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 69 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 66 | 66 | B.1.282 | 0.985075 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 61 | 61 | B.1.1.7 | 0.000055 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 53 | 53 | B.1.1 | 0.000961 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 48 | 48 | AY.54 | 0.004577 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 38 | 38 | B.1.281 | 0.826087 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 32 | 32 | AY.102 | 0.000848 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 31 | 31 | AY.42 | 0.001247 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 29 | 29 | B.1.240 | 0.006251 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 25 | 25 | B.1.369 | 0.007131 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 22 | 24 | B.1.637 | 0.001608 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 2 | 24 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 19 | 20 | B.1.2 | 0.000167 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 20 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 19 | 19 | B.1.1.25 | 0.010802 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 16 | 16 | AY.45 | 0.001947 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 12 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1884 | Q1884X | CaG | TaA | 1 | 13 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 11 | 13 | B.1.526 | 0.000259 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 2 | 13 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 12 | 12 | B.1.311 | 0.003295 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 11 | 11 | AY.62 | 0.004793 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 11 | 11 | B | 0.001406 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 8 | 9 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 9 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 6 | 7 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 7 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 7 | 7 | B.1.128 | 0.004447 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 7 | 7 | B.1.475 | 1 |
ORF1ab/nsp3 | 1884 | Q1884R | cAg | cGg | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1884 | Q1884L | cAg | cTg | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1884 | Q1884K | Cag | Aag | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1884 | Q1884K | CaG | AaA | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 6 | 6 | B.1.160.32 | 0.025751 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 6 | 6 | B.1.476 | 0.6 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 5 | 5 | AY.120.2 | 0.006427 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 5 | 5 | B.1.1.174 | 0.016892 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 5 | 5 | B.1.1.389 | 0.030303 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 5 | 5 | B.1.1.433 | 0.007123 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.58 | 0.00363 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 4 | 4 | B.1.436 | 0.004115 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1884 | Q1884del1 | Cag | -ag | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884del1 | caG | ca- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | AY.97 | 0.005102 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1884 | Q1884X | CaG | TaA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | C.4 | 0.03 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 3 | 3 | U.3 | 0.011583 |
ORF1ab/nsp3 | 1884 | Q1884K | CaG | AaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1884 | Q1884del1 | Cag | -ag | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1884 | Q1884P | cAg | cCg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884E | Cag | Gag | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884del2 | CAg | --g | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884del2 | cAG | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 1884 | Q1884L | cAg | cTg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.1.462 | 0.017241 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1884 | Q1884R | cAg | cGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.105 | 0.019231 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1884 | Q1884Y | CaG | TaC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884A | CAg | GCg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884N | CaG | AaC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884T | CAg | ACg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1884 | Q1884A | CAg | GCg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1884 | Q1884R | cAg | cGg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1884 | Q1884R | cAg | cGg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1884 | Q1884P | cAg | cCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1884 | Q1884del1 | caG | ca- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1884 | Q1884T | CAg | ACg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1884 | Q1884R | cAg | cGg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1884 | Q1884L | cAg | cTg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1884 | Q1884del2 | cAG | c-- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1884 | Q1884E | Cag | Gag | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1884 | Q1884E | Cag | Gag | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1884 | Q1884Y | CaG | TaC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1884 | Q1884P | cAg | cCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1884 | Q1884K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1884 | Q1884K | Cag | Aag | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1884 | Q1884K | Cag | Aag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1884 | Q1884L | cAg | cTg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1884 | Q1884X | Cag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1884 | Q1884del2 | CAg | --g | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.316 | 0.111111 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp3 | 1884 | Q1884K | Cag | Aag | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1884 | Q1884L | cAg | cTg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1884 | Q1884R | cAg | cGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1884 | Q1884L | cAg | cTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1884 | Q1884N | CaG | AaC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1884 | Q1884Q | caG | caA | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1884 | Q1884del | CAG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1884 | Q1884H | caG | caT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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