CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1884

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31884Q1884HQ2702HnonsyncaGcaT845484360.9978718369-8371
ORF1ab/nsp31884Q1884HQ2702HnonsyncaGcaC8454180.002129178369-8371
ORF1ab/nsp31884Q1884QQ2702QsyncaGcaA37737718369-8371
ORF1ab/nsp31884Q1884delQ2702deldelCAG---17917918369-8371
ORF1ab/nsp31884Q1884XQ2702XnonsynCagTag13120.9230778369-8371
ORF1ab/nsp31884Q1884XQ2702XnonsynCaGTaA1310.07692318369-8371
ORF1ab/nsp31884Q1884RQ2702RnonsyncAgcGg6618369-8371
ORF1ab/nsp31884Q1884LQ2702LnonsyncAgcTg6618369-8371
ORF1ab/nsp31884Q1884KQ2702KnonsynCagAag640.6666678369-8371
ORF1ab/nsp31884Q1884KQ2702KnonsynCaGAaA620.3333338369-8371
ORF1ab/nsp31884Q1884del1Q2702del1delCag-ag320.6666678369-8371
ORF1ab/nsp31884Q1884del1Q2702del1delcaGca-310.3333338369-8371
ORF1ab/nsp31884Q1884PQ2702PnonsyncAgcCg2218369-8371
ORF1ab/nsp31884Q1884EQ2702EnonsynCagGag2218369-8371
ORF1ab/nsp31884Q1884del2Q2702del2delcAGc--210.58369-8371
ORF1ab/nsp31884Q1884del2Q2702del2delCAg--g210.58369-8371
ORF1ab/nsp31884Q1884AQ2702AnonsynCAgGCg1118369-8371
ORF1ab/nsp31884Q1884NQ2702NnonsynCaGAaC1118369-8371
ORF1ab/nsp31884Q1884TQ2702TnonsynCAgACg1118369-8371
ORF1ab/nsp31884Q1884YQ2702YnonsynCaGTaC1118369-8371

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31884Q1884HcaGcaT84368454All0.001613
ORF1ab/nsp31884Q1884HcaGcaC188454All0.000003
ORF1ab/nsp31884Q1884HcaGcaT31433143B.1.1.2140.174301
ORF1ab/nsp31884Q1884HcaGcaT18551855B.10.016991
ORF1ab/nsp31884Q1884HcaGcaT990994B.1.3890.991984
ORF1ab/nsp31884Q1884HcaGcaC4994B.1.3890.004008
ORF1ab/nsp31884Q1884HcaGcaT877880B.1.1.70.000785
ORF1ab/nsp31884Q1884HcaGcaC3880B.1.1.70.000003
ORF1ab/nsp31884Q1884QcaGcaA377377All0.000072
ORF1ab/nsp31884Q1884HcaGcaT182182AY.40.000283
ORF1ab/nsp31884Q1884delCAG---179179All0.000034
ORF1ab/nsp31884Q1884HcaGcaT151151B.1.617.20.000569
ORF1ab/nsp31884Q1884HcaGcaT106106AY.1030.000658
ORF1ab/nsp31884Q1884HcaGcaT100100B.1.1.1011
ORF1ab/nsp31884Q1884QcaGcaA8686B.1.1.70.000077
ORF1ab/nsp31884Q1884HcaGcaT8282B.1.1591
ORF1ab/nsp31884Q1884QcaGcaA7373B.1.617.10.009414
ORF1ab/nsp31884Q1884HcaGcaT6869AY.430.000301
ORF1ab/nsp31884Q1884HcaGcaC169AY.430.000004
ORF1ab/nsp31884Q1884HcaGcaT6666B.1.2820.985075
ORF1ab/nsp31884Q1884delCAG---6161B.1.1.70.000055
ORF1ab/nsp31884Q1884HcaGcaT5353B.1.10.000961
ORF1ab/nsp31884Q1884HcaGcaT4848AY.540.004577
ORF1ab/nsp31884Q1884HcaGcaT3838B.1.2810.826087
ORF1ab/nsp31884Q1884HcaGcaT3535AY.30.000348
ORF1ab/nsp31884Q1884HcaGcaT3232AY.1020.000848
ORF1ab/nsp31884Q1884HcaGcaT3131AY.420.001247
ORF1ab/nsp31884Q1884HcaGcaT2929B.1.2400.006251
ORF1ab/nsp31884Q1884QcaGcaA2828AY.40.000044
ORF1ab/nsp31884Q1884HcaGcaT2525B.1.3690.007131
ORF1ab/nsp31884Q1884QcaGcaA2424B.1.617.20.00009
ORF1ab/nsp31884Q1884HcaGcaT2224B.1.6370.001608
ORF1ab/nsp31884Q1884HcaGcaC224B.1.6370.000146
ORF1ab/nsp31884Q1884HcaGcaT2323B.1.1600.000717
ORF1ab/nsp31884Q1884HcaGcaT1920B.1.20.000167
ORF1ab/nsp31884Q1884HcaGcaC120B.1.20.000009
ORF1ab/nsp31884Q1884HcaGcaT2020P.10.000315
ORF1ab/nsp31884Q1884HcaGcaT1919B.1.1.250.010802
ORF1ab/nsp31884Q1884HcaGcaT1919B.1.1770.00025
ORF1ab/nsp31884Q1884HcaGcaT1818AY.440.00011
ORF1ab/nsp31884Q1884HcaGcaT1616AY.250.000096
ORF1ab/nsp31884Q1884QcaGcaA1616AY.450.001947
ORF1ab/nsp31884Q1884QcaGcaA1515B.1.4290.000353
ORF1ab/nsp31884Q1884QcaGcaA1414AY.1030.000087
ORF1ab/nsp31884Q1884XCagTag1213All0.000002
ORF1ab/nsp31884Q1884XCaGTaA113All0
ORF1ab/nsp31884Q1884HcaGcaT1113B.1.5260.000259
ORF1ab/nsp31884Q1884HcaGcaC213B.1.5260.000047
ORF1ab/nsp31884Q1884HcaGcaT1212B.1.3110.003295
ORF1ab/nsp31884Q1884HcaGcaT1111AY.620.004793
ORF1ab/nsp31884Q1884HcaGcaT1111B0.001406
ORF1ab/nsp31884Q1884delCAG---1111B.10.000101
ORF1ab/nsp31884Q1884HcaGcaT1111B.1.4290.000259
ORF1ab/nsp31884Q1884QcaGcaA1010B.1.20.000088
ORF1ab/nsp31884Q1884HcaGcaT89B.1.5250.000905
ORF1ab/nsp31884Q1884HcaGcaC19B.1.5250.000113
ORF1ab/nsp31884Q1884QcaGcaA77AY.1020.000186
ORF1ab/nsp31884Q1884QcaGcaA77AY.200.000272
ORF1ab/nsp31884Q1884HcaGcaT67AY.230.000418
ORF1ab/nsp31884Q1884HcaGcaC17AY.230.00007
ORF1ab/nsp31884Q1884HcaGcaT77AY.330.000467
ORF1ab/nsp31884Q1884QcaGcaA77AY.390.000173
ORF1ab/nsp31884Q1884HcaGcaT77AY.390.000173
ORF1ab/nsp31884Q1884delCAG---77AY.4.50.000752
ORF1ab/nsp31884Q1884HcaGcaT77B.1.1280.004447
ORF1ab/nsp31884Q1884delCAG---77B.1.1770.000092
ORF1ab/nsp31884Q1884HcaGcaT77B.1.4751
ORF1ab/nsp31884Q1884RcAgcGg66All0.000001
ORF1ab/nsp31884Q1884LcAgcTg66All0.000001
ORF1ab/nsp31884Q1884KCagAag46All0.000001
ORF1ab/nsp31884Q1884KCaGAaA26All0
ORF1ab/nsp31884Q1884HcaGcaT66AY.1180.000376
ORF1ab/nsp31884Q1884HcaGcaT66AY.1190.000212
ORF1ab/nsp31884Q1884HcaGcaT66AY.470.000187
ORF1ab/nsp31884Q1884QcaGcaA66B.10.000055
ORF1ab/nsp31884Q1884HcaGcaT66B.1.160.320.025751
ORF1ab/nsp31884Q1884HcaGcaT66B.1.4760.6
ORF1ab/nsp31884Q1884QcaGcaA55AY.120.20.006427
ORF1ab/nsp31884Q1884delCAG---55AY.40.000008
ORF1ab/nsp31884Q1884HcaGcaT55B.1.1.1740.016892
ORF1ab/nsp31884Q1884QcaGcaA55B.1.1.3890.030303
ORF1ab/nsp31884Q1884QcaGcaA55B.1.1.4330.007123
ORF1ab/nsp31884Q1884QcaGcaA55B.1.1770.000066
ORF1ab/nsp31884Q1884HcaGcaT55B.1.5960.000436
ORF1ab/nsp31884Q1884delCAG---440.222222
ORF1ab/nsp31884Q1884HcaGcaT44AY.1000.000184
ORF1ab/nsp31884Q1884HcaGcaT44AY.1170.000338
ORF1ab/nsp31884Q1884HcaGcaT44AY.1200.000149
ORF1ab/nsp31884Q1884HcaGcaT44AY.200.000155
ORF1ab/nsp31884Q1884HcaGcaT44AY.290.000063
ORF1ab/nsp31884Q1884HcaGcaT44AY.360.000593
ORF1ab/nsp31884Q1884HcaGcaT44AY.380.001997
ORF1ab/nsp31884Q1884delCAG---44AY.430.000018
ORF1ab/nsp31884Q1884QcaGcaA44AY.440.000024
ORF1ab/nsp31884Q1884HcaGcaT44AY.580.00363
ORF1ab/nsp31884Q1884QcaGcaA44AY.710.0019
ORF1ab/nsp31884Q1884HcaGcaT44AY.9.20.000147
ORF1ab/nsp31884Q1884delCAG---44B.1.10.000073
ORF1ab/nsp31884Q1884HcaGcaT44B.1.2410.003247
ORF1ab/nsp31884Q1884HcaGcaT44B.1.36.290.002069
ORF1ab/nsp31884Q1884HcaGcaT44B.1.4360.004115
ORF1ab/nsp31884Q1884delCAG---44C.370.000464
ORF1ab/nsp31884Q1884delCAG---44P.10.000063
ORF1ab/nsp31884Q1884delCAG---44P.1.150.000929
ORF1ab/nsp31884Q1884del1Cag-ag23All0
ORF1ab/nsp31884Q1884del1caGca-13All0
ORF1ab/nsp31884Q1884HcaGcaT33AY.1110.000549
ORF1ab/nsp31884Q1884HcaGcaT33AY.1210.000406
ORF1ab/nsp31884Q1884HcaGcaT33AY.140.000264
ORF1ab/nsp31884Q1884QcaGcaA33AY.230.000209
ORF1ab/nsp31884Q1884delCAG---33AY.250.000018
ORF1ab/nsp31884Q1884HcaGcaT33AY.39.10.000119
ORF1ab/nsp31884Q1884QcaGcaA33AY.420.000121
ORF1ab/nsp31884Q1884HcaGcaT33AY.640.001786
ORF1ab/nsp31884Q1884HcaGcaT33AY.970.005102
ORF1ab/nsp31884Q1884XCagTag23B.1.10.000036
ORF1ab/nsp31884Q1884XCaGTaA13B.1.10.000018
ORF1ab/nsp31884Q1884HcaGcaT33B.1.1.2200.005576
ORF1ab/nsp31884Q1884HcaGcaT33B.1.1.3060.001315
ORF1ab/nsp31884Q1884HcaGcaT33B.1.1.630.001157
ORF1ab/nsp31884Q1884HcaGcaT33B.1.130.007126
ORF1ab/nsp31884Q1884delCAG---33B.1.20.000026
ORF1ab/nsp31884Q1884QcaGcaA33B.1.2430.000209
ORF1ab/nsp31884Q1884HcaGcaT33B.1.3200.003736
ORF1ab/nsp31884Q1884HcaGcaT23B.1.3510.000059
ORF1ab/nsp31884Q1884HcaGcaC13B.1.3510.00003
ORF1ab/nsp31884Q1884HcaGcaT33B.1.4110.011111
ORF1ab/nsp31884Q1884HcaGcaT33B.1.5950.000783
ORF1ab/nsp31884Q1884delCAG---33B.1.617.20.000011
ORF1ab/nsp31884Q1884HcaGcaT33C.350.002322
ORF1ab/nsp31884Q1884HcaGcaT33C.40.03
ORF1ab/nsp31884Q1884HcaGcaT33R.10.00027
ORF1ab/nsp31884Q1884HcaGcaT33U.30.011583
ORF1ab/nsp31884Q1884KCaGAaA220.111111
ORF1ab/nsp31884Q1884del1Cag-ag220.111111
ORF1ab/nsp31884Q1884delCAG---22AD.20.000438
ORF1ab/nsp31884Q1884PcAgcCg22All0
ORF1ab/nsp31884Q1884ECagGag22All0
ORF1ab/nsp31884Q1884del2CAg--g12All0
ORF1ab/nsp31884Q1884del2cAGc--12All0
ORF1ab/nsp31884Q1884QcaGcaA22AY.1070.000932
ORF1ab/nsp31884Q1884QcaGcaA22AY.1110.000366
ORF1ab/nsp31884Q1884QcaGcaA22AY.1130.000285
ORF1ab/nsp31884Q1884delCAG---22AY.1190.000071
ORF1ab/nsp31884Q1884QcaGcaA22AY.1200.000074
ORF1ab/nsp31884Q1884HcaGcaT22AY.23.10.000835
ORF1ab/nsp31884Q1884HcaGcaT22AY.260.000057
ORF1ab/nsp31884Q1884QcaGcaA22AY.280.003781
ORF1ab/nsp31884Q1884QcaGcaA22AY.290.000032
ORF1ab/nsp31884Q1884QcaGcaA22AY.30.00002
ORF1ab/nsp31884Q1884HcaGcaT22AY.410.000588
ORF1ab/nsp31884Q1884LcAgcTg22AY.430.000009
ORF1ab/nsp31884Q1884HcaGcaT22AY.450.000243
ORF1ab/nsp31884Q1884HcaGcaT22AY.46.50.000397
ORF1ab/nsp31884Q1884delCAG---22AY.46.60.000144
ORF1ab/nsp31884Q1884delCAG---22AY.50.000041
ORF1ab/nsp31884Q1884QcaGcaA22AY.610.00021
ORF1ab/nsp31884Q1884HcaGcaT22AY.610.00021
ORF1ab/nsp31884Q1884HcaGcaT22AY.680.000547
ORF1ab/nsp31884Q1884HcaGcaT22AY.750.000112
ORF1ab/nsp31884Q1884HcaGcaT22AY.75.10.000361
ORF1ab/nsp31884Q1884HcaGcaT22AY.840.000875
ORF1ab/nsp31884Q1884HcaGcaT22AY.90.000135
ORF1ab/nsp31884Q1884HcaGcaT22AY.9.2.10.003953
ORF1ab/nsp31884Q1884HcaGcaT22AY.980.000158
ORF1ab/nsp31884Q1884delCAG---22AZ.20.001642
ORF1ab/nsp31884Q1884delCAG---22B.1.1.2360.013793
ORF1ab/nsp31884Q1884delCAG---22B.1.1.3110.000716
ORF1ab/nsp31884Q1884HcaGcaT22B.1.1.330.000842
ORF1ab/nsp31884Q1884HcaGcaT22B.1.1.4620.017241
ORF1ab/nsp31884Q1884HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp31884Q1884RcAgcGg22B.1.1.70.000002
ORF1ab/nsp31884Q1884XCagTag22B.1.1.70.000002
ORF1ab/nsp31884Q1884HcaGcaT22B.1.1050.019231
ORF1ab/nsp31884Q1884HcaGcaT22B.1.110.30.001437
ORF1ab/nsp31884Q1884delCAG---22B.1.177.210.000153
ORF1ab/nsp31884Q1884HcaGcaT22B.1.177.560.001335
ORF1ab/nsp31884Q1884delCAG---22B.1.177.630.005405
ORF1ab/nsp31884Q1884HcaGcaT22B.1.177.70.00033
ORF1ab/nsp31884Q1884HcaGcaT22B.1.177.820.000955
ORF1ab/nsp31884Q1884QcaGcaA22B.1.360.000292
ORF1ab/nsp31884Q1884delCAG---22B.1.36.170.000988
ORF1ab/nsp31884Q1884HcaGcaT22B.1.36.70.008
ORF1ab/nsp31884Q1884HcaGcaT22B.1.3620.003082
ORF1ab/nsp31884Q1884QcaGcaA22B.1.4280.002041
ORF1ab/nsp31884Q1884HcaGcaT22B.1.5240.002813
ORF1ab/nsp31884Q1884HcaGcaT22B.1.6230.001073
ORF1ab/nsp31884Q1884HcaGcaT22D.20.00015
ORF1ab/nsp31884Q1884QcaGcaA22P.10.000032
ORF1ab/nsp31884Q1884HcaGcaT22P.1.140.000096
ORF1ab/nsp31884Q1884HcaGcaT22P.1.70.000639
ORF1ab/nsp31884Q1884HcaGcaT22P.20.000373
ORF1ab/nsp31884Q1884HcaGcaT22Q.80.00033
ORF1ab/nsp31884Q1884HcaGcaC11A.2.20.001689
ORF1ab/nsp31884Q1884HcaGcaT11A.2.50.000499
ORF1ab/nsp31884Q1884HcaGcaT11A.2.5.20.001572
ORF1ab/nsp31884Q1884HcaGcaT11A.270.001656
ORF1ab/nsp31884Q1884YCaGTaC11All0
ORF1ab/nsp31884Q1884ACAgGCg11All0
ORF1ab/nsp31884Q1884NCaGAaC11All0
ORF1ab/nsp31884Q1884TCAgACg11All0
ORF1ab/nsp31884Q1884ACAgGCg11AY.1020.000027
ORF1ab/nsp31884Q1884HcaGcaT11AY.1100.000113
ORF1ab/nsp31884Q1884delCAG---11AY.1110.000183
ORF1ab/nsp31884Q1884HcaGcaT11AY.1130.000142
ORF1ab/nsp31884Q1884delCAG---11AY.1130.000142
ORF1ab/nsp31884Q1884delCAG---11AY.1200.000037
ORF1ab/nsp31884Q1884XCagTag11AY.1200.000037
ORF1ab/nsp31884Q1884HcaGcaT11AY.160.00038
ORF1ab/nsp31884Q1884HcaGcaT11AY.20.000356
ORF1ab/nsp31884Q1884delCAG---11AY.200.000039
ORF1ab/nsp31884Q1884RcAgcGg11AY.230.00007
ORF1ab/nsp31884Q1884XCagTag11AY.23.10.000417
ORF1ab/nsp31884Q1884RcAgcGg11AY.23.10.000417
ORF1ab/nsp31884Q1884QcaGcaA11AY.250.000006
ORF1ab/nsp31884Q1884delCAG---11AY.330.000067
ORF1ab/nsp31884Q1884HcaGcaT11AY.340.000097
ORF1ab/nsp31884Q1884HcaGcaT11AY.350.000233
ORF1ab/nsp31884Q1884QcaGcaA11AY.39.10.00004
ORF1ab/nsp31884Q1884PcAgcCg11AY.40.000002
ORF1ab/nsp31884Q1884del1caGca-11AY.40.000002
ORF1ab/nsp31884Q1884QcaGcaA11AY.430.000004
ORF1ab/nsp31884Q1884XCagTag11AY.430.000004
ORF1ab/nsp31884Q1884TCAgACg11AY.440.000006
ORF1ab/nsp31884Q1884HcaGcaT11AY.460.000104
ORF1ab/nsp31884Q1884QcaGcaA11AY.46.20.000635
ORF1ab/nsp31884Q1884RcAgcGg11AY.470.000031
ORF1ab/nsp31884Q1884LcAgcTg11AY.470.000031
ORF1ab/nsp31884Q1884XCagTag11AY.50.000021
ORF1ab/nsp31884Q1884HcaGcaT11AY.50.000021
ORF1ab/nsp31884Q1884QcaGcaA11AY.50.000021
ORF1ab/nsp31884Q1884HcaGcaT11AY.5.20.002463
ORF1ab/nsp31884Q1884QcaGcaA11AY.510.000909
ORF1ab/nsp31884Q1884HcaGcaT11AY.590.00053
ORF1ab/nsp31884Q1884QcaGcaA11AY.590.00053
ORF1ab/nsp31884Q1884delCAG---11AY.600.000938
ORF1ab/nsp31884Q1884delCAG---11AY.610.000105
ORF1ab/nsp31884Q1884HcaGcaT11AY.660.00107
ORF1ab/nsp31884Q1884del2cAGc--11AY.670.000464
ORF1ab/nsp31884Q1884ECagGag11AY.690.000187
ORF1ab/nsp31884Q1884delCAG---11AY.720.001361
ORF1ab/nsp31884Q1884QcaGcaA11AY.780.001541
ORF1ab/nsp31884Q1884delCAG---11AY.810.001992
ORF1ab/nsp31884Q1884HcaGcaT11AY.830.001724
ORF1ab/nsp31884Q1884HcaGcaT11AY.880.000884
ORF1ab/nsp31884Q1884delCAG---11AY.90.000068
ORF1ab/nsp31884Q1884ECagGag11AY.9.20.000037
ORF1ab/nsp31884Q1884HcaGcaT11AY.900.000684
ORF1ab/nsp31884Q1884HcaGcaT11AY.960.002075
ORF1ab/nsp31884Q1884XCagTag11AY.990.001049
ORF1ab/nsp31884Q1884HcaGcaT11AY.990.001049
ORF1ab/nsp31884Q1884YCaGTaC11AY.990.001049
ORF1ab/nsp31884Q1884HcaGcaT11AY.99.20.000092
ORF1ab/nsp31884Q1884PcAgcCg11B.10.000009
ORF1ab/nsp31884Q1884KCagAag11B.10.000009
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.1570.000913
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.1860.003436
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.1920.002309
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.1940.00495
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.2220.000204
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.2270.004348
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.2690.001353
ORF1ab/nsp31884Q1884XCagTag11B.1.1.2770.000759
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.280.000311
ORF1ab/nsp31884Q1884delCAG---11B.1.1.3060.000438
ORF1ab/nsp31884Q1884delCAG---11B.1.1.3120.001912
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.3540.004386
ORF1ab/nsp31884Q1884HcaGcaC11B.1.1.3690.000446
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.390.00051
ORF1ab/nsp31884Q1884delCAG---11B.1.1.4090.002833
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.4130.006897
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.4320.001266
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.4320.001266
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1.470.005348
ORF1ab/nsp31884Q1884XCagTag11B.1.1.500.000679
ORF1ab/nsp31884Q1884KCagAag11B.1.1.5190.00004
ORF1ab/nsp31884Q1884QcaGcaA11B.1.1.5190.00004
ORF1ab/nsp31884Q1884KCagAag11B.1.1.70.000001
ORF1ab/nsp31884Q1884LcAgcTg11B.1.1.70.000001
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1040.00369
ORF1ab/nsp31884Q1884HcaGcaT11B.1.1260.001276
ORF1ab/nsp31884Q1884HcaGcaT11B.1.160.160.000929
ORF1ab/nsp31884Q1884HcaGcaT11B.1.160.260.002421
ORF1ab/nsp31884Q1884QcaGcaA11B.1.160.70.002079
ORF1ab/nsp31884Q1884XCagTag11B.1.1770.000013
ORF1ab/nsp31884Q1884delCAG---11B.1.177.150.000631
ORF1ab/nsp31884Q1884del2CAg--g11B.1.177.160.000664
ORF1ab/nsp31884Q1884delCAG---11B.1.177.170.000821
ORF1ab/nsp31884Q1884delCAG---11B.1.177.180.00116
ORF1ab/nsp31884Q1884QcaGcaA11B.1.177.320.00135
ORF1ab/nsp31884Q1884HcaGcaT11B.1.177.40.000211
ORF1ab/nsp31884Q1884delCAG---11B.1.177.40.000211
ORF1ab/nsp31884Q1884delCAG---11B.1.177.50.001242
ORF1ab/nsp31884Q1884delCAG---11B.1.177.510.004566
ORF1ab/nsp31884Q1884delCAG---11B.1.177.540.000606
ORF1ab/nsp31884Q1884delCAG---11B.1.177.550.002331
ORF1ab/nsp31884Q1884HcaGcaT11B.1.177.600.000218
ORF1ab/nsp31884Q1884HcaGcaT11B.1.177.730.000566
ORF1ab/nsp31884Q1884delCAG---11B.1.177.730.000566
ORF1ab/nsp31884Q1884QcaGcaA11B.1.177.820.000477
ORF1ab/nsp31884Q1884delCAG---11B.1.177.830.001481
ORF1ab/nsp31884Q1884delCAG---11B.1.177.90.001332
ORF1ab/nsp31884Q1884delCAG---11B.1.1790.003759
ORF1ab/nsp31884Q1884HcaGcaT11B.1.220.001318
ORF1ab/nsp31884Q1884QcaGcaA11B.1.2210.000071
ORF1ab/nsp31884Q1884delCAG---11B.1.221.10.002907
ORF1ab/nsp31884Q1884HcaGcaT11B.1.2320.000537
ORF1ab/nsp31884Q1884delCAG---11B.1.2340.000132
ORF1ab/nsp31884Q1884QcaGcaA11B.1.2400.000216
ORF1ab/nsp31884Q1884delCAG---11B.1.2430.00007
ORF1ab/nsp31884Q1884HcaGcaT11B.1.2430.00007
ORF1ab/nsp31884Q1884delCAG---11B.1.2580.000067
ORF1ab/nsp31884Q1884delCAG---11B.1.258.30.001675
ORF1ab/nsp31884Q1884HcaGcaT11B.1.2760.016949
ORF1ab/nsp31884Q1884HcaGcaT11B.1.2930.0125
ORF1ab/nsp31884Q1884HcaGcaT11B.1.3160.111111
ORF1ab/nsp31884Q1884HcaGcaT11B.1.3290.000608
ORF1ab/nsp31884Q1884HcaGcaT11B.1.3460.001311
ORF1ab/nsp31884Q1884HcaGcaT11B.1.3500.002933
ORF1ab/nsp31884Q1884KCagAag11B.1.3510.00003
ORF1ab/nsp31884Q1884HcaGcaT11B.1.360.000146
ORF1ab/nsp31884Q1884HcaGcaT11B.1.36.160.001425
ORF1ab/nsp31884Q1884QcaGcaA11B.1.3670.000792
ORF1ab/nsp31884Q1884HcaGcaT11B.1.4000.000429
ORF1ab/nsp31884Q1884QcaGcaA11B.1.4150.014286
ORF1ab/nsp31884Q1884QcaGcaA11B.1.4160.001269
ORF1ab/nsp31884Q1884QcaGcaA11B.1.4270.00005
ORF1ab/nsp31884Q1884LcAgcTg11B.1.466.20.000391
ORF1ab/nsp31884Q1884HcaGcaT11B.1.466.20.000391
ORF1ab/nsp31884Q1884HcaGcaT11B.1.4700.001404
ORF1ab/nsp31884Q1884HcaGcaT11B.1.4970.000315
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5090.000866
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5170.000427
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5200.021739
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5400.009709
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5440.006024
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5760.000907
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5900.004545
ORF1ab/nsp31884Q1884HcaGcaT11B.1.5910.010638
ORF1ab/nsp31884Q1884delCAG---11B.1.5960.000087
ORF1ab/nsp31884Q1884RcAgcGg11B.1.617.20.000004
ORF1ab/nsp31884Q1884LcAgcTg11B.1.617.20.000004
ORF1ab/nsp31884Q1884delCAG---11B.1.6210.000089
ORF1ab/nsp31884Q1884HcaGcaT11B.1.621.10.000506
ORF1ab/nsp31884Q1884HcaGcaT11B.1.6250.002353
ORF1ab/nsp31884Q1884HcaGcaT11B.1.6280.000352
ORF1ab/nsp31884Q1884HcaGcaT11B.1.80.001972
ORF1ab/nsp31884Q1884HcaGcaT11B.1.910.002075
ORF1ab/nsp31884Q1884HcaGcaT11B.450.003831
ORF1ab/nsp31884Q1884HcaGcaT11B.600.015873
ORF1ab/nsp31884Q1884delCAG---11C.170.055556
ORF1ab/nsp31884Q1884NCaGAaC11C.350.000774
ORF1ab/nsp31884Q1884HcaGcaT11P.1.150.000232
ORF1ab/nsp31884Q1884QcaGcaA11P.1.170.000162
ORF1ab/nsp31884Q1884HcaGcaT11P.1.20.001156
ORF1ab/nsp31884Q1884delCAG---11P.1.70.000319
ORF1ab/nsp31884Q1884HcaGcaT11Q.10.000126
ORF1ab/nsp31884Q1884delCAG---11Q.10.000126
ORF1ab/nsp31884Q1884HcaGcaT11Q.40.000455