CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1878 & Codon = gcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31878A1878AA2696AsyngcGgcT20195110.2530968351-8353

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31878A1878AgcGgcT5112019All0.000098
ORF1ab/nsp31878A1878AgcGgcT119336B.1.1.70.000107
ORF1ab/nsp31878A1878AgcGgcT2125B.1.1.10.000653
ORF1ab/nsp31878A1878AgcGgcT17113B.1.20.00015
ORF1ab/nsp31878A1878AgcGgcT4190AY.40.000064
ORF1ab/nsp31878A1878AgcGgcT3879B.1.617.20.000143
ORF1ab/nsp31878A1878AgcGgcT6060B.1.5250.00679
ORF1ab/nsp31878A1878AgcGgcT727B.10.000064
ORF1ab/nsp31878A1878AgcGgcT2525B.1.1.280.007781
ORF1ab/nsp31878A1878AgcGgcT2125C.370.002437
ORF1ab/nsp31878A1878AgcGgcT1924AY.440.000116
ORF1ab/nsp31878A1878AgcGgcT2023AY.30.000199
ORF1ab/nsp31878A1878AgcGgcT219B.1.1770.000026
ORF1ab/nsp31878A1878AgcGgcT615AY.1020.000159
ORF1ab/nsp31878A1878AgcGgcT912AY.430.00004
ORF1ab/nsp31878A1878AgcGgcT512B.1.10.000091
ORF1ab/nsp31878A1878AgcGgcT712P.10.00011
ORF1ab/nsp31878A1878AgcGgcT79B.1.4290.000165
ORF1ab/nsp31878A1878AgcGgcT38AY.250.000018
ORF1ab/nsp31878A1878AgcGgcT37AY.1030.000019
ORF1ab/nsp31878A1878AgcGgcT67AY.200.000233
ORF1ab/nsp31878A1878AgcGgcT15AY.90.000068
ORF1ab/nsp31878A1878AgcGgcT55B.1.6200.00473
ORF1ab/nsp31878A1878AgcGgcT34AY.1000.000138
ORF1ab/nsp31878A1878AgcGgcT34AY.1210.000406
ORF1ab/nsp31878A1878AgcGgcT44AY.350.000932
ORF1ab/nsp31878A1878AgcGgcT44AY.4.20.000087
ORF1ab/nsp31878A1878AgcGgcT44B.1.3510.000119
ORF1ab/nsp31878A1878AgcGgcT24B.1.5960.000174
ORF1ab/nsp31878A1878AgcGgcT24B.1.617.10.000258
ORF1ab/nsp31878A1878AgcGgcT33AY.360.000445
ORF1ab/nsp31878A1878AgcGgcT13AY.390.000025
ORF1ab/nsp31878A1878AgcGgcT33AY.46.20.001906
ORF1ab/nsp31878A1878AgcGgcT13AY.50.000021
ORF1ab/nsp31878A1878AgcGgcT33B.1.1.3260.005282
ORF1ab/nsp31878A1878AgcGgcT13B.1.177.730.000566
ORF1ab/nsp31878A1878AgcGgcT13B.1.2580.000067
ORF1ab/nsp31878A1878AgcGgcT23B.1.5260.000047
ORF1ab/nsp31878A1878AgcGgcT33M.10.069767
ORF1ab/nsp31878A1878AgcGgcT220.111111
ORF1ab/nsp31878A1878AgcGgcT22AY.1170.000169
ORF1ab/nsp31878A1878AgcGgcT22AY.240.000862
ORF1ab/nsp31878A1878AgcGgcT12AY.260.000028
ORF1ab/nsp31878A1878AgcGgcT22AY.480.00093
ORF1ab/nsp31878A1878AgcGgcT22AY.770.002255
ORF1ab/nsp31878A1878AgcGgcT22B.1.1.3540.008772
ORF1ab/nsp31878A1878AgcGgcT12B.1.1.3890.006061
ORF1ab/nsp31878A1878AgcGgcT22B.1.1.4320.002532
ORF1ab/nsp31878A1878AgcGgcT22B.1.177.210.000153
ORF1ab/nsp31878A1878AgcGgcT22B.1.177.820.000955
ORF1ab/nsp31878A1878AgcGgcT12B.1.2430.00007
ORF1ab/nsp31878A1878AgcGgcT22B.1.4700.002809
ORF1ab/nsp31878A1878AgcGgcT22B.1.4970.00063
ORF1ab/nsp31878A1878AgcGgcT11A.20.000662
ORF1ab/nsp31878A1878AgcGgcT11AY.1090.00074
ORF1ab/nsp31878A1878AgcGgcT11AY.1200.000037
ORF1ab/nsp31878A1878AgcGgcT11AY.140.000088
ORF1ab/nsp31878A1878AgcGgcT11AY.340.000097
ORF1ab/nsp31878A1878AgcGgcT11AY.420.00004
ORF1ab/nsp31878A1878AgcGgcT11AY.450.000122
ORF1ab/nsp31878A1878AgcGgcT11AY.520.000814
ORF1ab/nsp31878A1878AgcGgcT11AY.540.000095
ORF1ab/nsp31878A1878AgcGgcT11AY.550.000917
ORF1ab/nsp31878A1878AgcGgcT11AY.590.00053
ORF1ab/nsp31878A1878AgcGgcT11AY.7.20.000559
ORF1ab/nsp31878A1878AgcGgcT11AY.9.10.000084
ORF1ab/nsp31878A1878AgcGgcT11AY.98.10.000048
ORF1ab/nsp31878A1878AgcGgcT11B.1.1.2840.000107
ORF1ab/nsp31878A1878AgcGgcT11B.1.1.4670.019231
ORF1ab/nsp31878A1878AgcGgcT11B.1.351.20.000303
ORF1ab/nsp31878A1878AgcGgcT11B.1.360.000146
ORF1ab/nsp31878A1878AgcGgcT11B.1.4740.001901
ORF1ab/nsp31878A1878AgcGgcT11B.1.617.30.002985
ORF1ab/nsp31878A1878AgcGgcT11B.1.6280.000352
ORF1ab/nsp31878A1878AgcGgcT11B.550.00295
ORF1ab/nsp31878A1878AgcGgcT11C.37.10.002618