CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1878 & Codon = gcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31878A1878AA2696AsyngcGgcA201915000.7429428351-8353

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31878A1878AgcGgcA15002019All0.000287
ORF1ab/nsp31878A1878AgcGgcA576576C.300.994819
ORF1ab/nsp31878A1878AgcGgcA216336B.1.1.70.000193
ORF1ab/nsp31878A1878AgcGgcA149149C.30.11
ORF1ab/nsp31878A1878AgcGgcA123125B.1.1.10.040183
ORF1ab/nsp31878A1878AgcGgcA96113B.1.20.000845
ORF1ab/nsp31878A1878AgcGgcA4990AY.40.000076
ORF1ab/nsp31878A1878AgcGgcA4179B.1.617.20.000154
ORF1ab/nsp31878A1878AgcGgcA5454C.310.964286
ORF1ab/nsp31878A1878AgcGgcA2027B.10.000183
ORF1ab/nsp31878A1878AgcGgcA524AY.440.00003
ORF1ab/nsp31878A1878AgcGgcA323AY.30.00003
ORF1ab/nsp31878A1878AgcGgcA1719B.1.1770.000224
ORF1ab/nsp31878A1878AgcGgcA815AY.1020.000212
ORF1ab/nsp31878A1878AgcGgcA312AY.430.000013
ORF1ab/nsp31878A1878AgcGgcA712B.1.10.000127
ORF1ab/nsp31878A1878AgcGgcA1212B.1.1260.015306
ORF1ab/nsp31878A1878AgcGgcA1212B.1.160.120.076923
ORF1ab/nsp31878A1878AgcGgcA512P.10.000079
ORF1ab/nsp31878A1878AgcGgcA99AY.750.000504
ORF1ab/nsp31878A1878AgcGgcA29B.1.4290.000047
ORF1ab/nsp31878A1878AgcGgcA58AY.250.00003
ORF1ab/nsp31878A1878AgcGgcA47AY.1030.000025
ORF1ab/nsp31878A1878AgcGgcA17AY.200.000039
ORF1ab/nsp31878A1878AgcGgcA77AY.530.002013
ORF1ab/nsp31878A1878AgcGgcA45AY.90.00027
ORF1ab/nsp31878A1878AgcGgcA14AY.1000.000046
ORF1ab/nsp31878A1878AgcGgcA14AY.1210.000135
ORF1ab/nsp31878A1878AgcGgcA44AY.99.20.000369
ORF1ab/nsp31878A1878AgcGgcA44B.1.177.440.002076
ORF1ab/nsp31878A1878AgcGgcA24B.1.5960.000174
ORF1ab/nsp31878A1878AgcGgcA24B.1.617.10.000258
ORF1ab/nsp31878A1878AgcGgcA33AY.20.001068
ORF1ab/nsp31878A1878AgcGgcA23AY.390.000049
ORF1ab/nsp31878A1878AgcGgcA33AY.470.000093
ORF1ab/nsp31878A1878AgcGgcA23AY.50.000041
ORF1ab/nsp31878A1878AgcGgcA23B.1.177.730.001133
ORF1ab/nsp31878A1878AgcGgcA23B.1.2580.000133
ORF1ab/nsp31878A1878AgcGgcA13B.1.5260.000024
ORF1ab/nsp31878A1878AgcGgcA33P.1.40.00293
ORF1ab/nsp31878A1878AgcGgcA22AY.1180.000125
ORF1ab/nsp31878A1878AgcGgcA12AY.260.000028
ORF1ab/nsp31878A1878AgcGgcA22AY.5.30.000675
ORF1ab/nsp31878A1878AgcGgcA22AY.620.000871
ORF1ab/nsp31878A1878AgcGgcA22B0.000256
ORF1ab/nsp31878A1878AgcGgcA22B.1.1.1940.009901
ORF1ab/nsp31878A1878AgcGgcA22B.1.1.2140.000111
ORF1ab/nsp31878A1878AgcGgcA12B.1.1.3890.006061
ORF1ab/nsp31878A1878AgcGgcA12B.1.2430.00007
ORF1ab/nsp31878A1878AgcGgcA22B.1.466.20.000782
ORF1ab/nsp31878A1878AgcGgcA22P.1.140.000096
ORF1ab/nsp31878A1878AgcGgcA22Q.10.000253
ORF1ab/nsp31878A1878AgcGgcA11AN.10.02
ORF1ab/nsp31878A1878AgcGgcA11AY.120.000316
ORF1ab/nsp31878A1878AgcGgcA11AY.130.000161
ORF1ab/nsp31878A1878AgcGgcA11AY.23.10.000417
ORF1ab/nsp31878A1878AgcGgcA11AY.290.000016
ORF1ab/nsp31878A1878AgcGgcA11AY.39.10.00004
ORF1ab/nsp31878A1878AgcGgcA11AY.46.40.000165
ORF1ab/nsp31878A1878AgcGgcA11AY.5.40.000277
ORF1ab/nsp31878A1878AgcGgcA11AY.70.000196
ORF1ab/nsp31878A1878AgcGgcA11AY.980.000079
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.3280.016949
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.3480.000796
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.3720.000689
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.390.00051
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.630.000386
ORF1ab/nsp31878A1878AgcGgcA11B.1.1600.000031
ORF1ab/nsp31878A1878AgcGgcA11B.1.177.860.000183
ORF1ab/nsp31878A1878AgcGgcA11B.1.4200.010417
ORF1ab/nsp31878A1878AgcGgcA11B.1.6230.000536