CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1878 & Codon = gcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31878A1878AA2696AsyngcGgcA201915000.7429428351-8353

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31878A1878AgcGgcA15002019All0.000287
ORF1ab/nsp31878A1878AgcGgcA576576C.300.994819
ORF1ab/nsp31878A1878AgcGgcA216336B.1.1.70.000193
ORF1ab/nsp31878A1878AgcGgcA149149C.30.11
ORF1ab/nsp31878A1878AgcGgcA123125B.1.1.10.040183
ORF1ab/nsp31878A1878AgcGgcA96113B.1.20.000845
ORF1ab/nsp31878A1878AgcGgcA4990AY.40.000076
ORF1ab/nsp31878A1878AgcGgcA4179B.1.617.20.000154
ORF1ab/nsp31878A1878AgcGgcA5454C.310.964286
ORF1ab/nsp31878A1878AgcGgcA2027B.10.000183
ORF1ab/nsp31878A1878AgcGgcA524AY.440.00003
ORF1ab/nsp31878A1878AgcGgcA323AY.30.00003
ORF1ab/nsp31878A1878AgcGgcA1719B.1.1770.000224
ORF1ab/nsp31878A1878AgcGgcA815AY.1020.000212
ORF1ab/nsp31878A1878AgcGgcA312AY.430.000013
ORF1ab/nsp31878A1878AgcGgcA712B.1.10.000127
ORF1ab/nsp31878A1878AgcGgcA1212B.1.1260.015306
ORF1ab/nsp31878A1878AgcGgcA1212B.1.160.120.076923
ORF1ab/nsp31878A1878AgcGgcA512P.10.000079
ORF1ab/nsp31878A1878AgcGgcA99AY.750.000504
ORF1ab/nsp31878A1878AgcGgcA29B.1.4290.000047
ORF1ab/nsp31878A1878AgcGgcA58AY.250.00003
ORF1ab/nsp31878A1878AgcGgcA47AY.1030.000025
ORF1ab/nsp31878A1878AgcGgcA17AY.200.000039
ORF1ab/nsp31878A1878AgcGgcA77AY.530.002013
ORF1ab/nsp31878A1878AgcGgcA45AY.90.00027
ORF1ab/nsp31878A1878AgcGgcA14AY.1000.000046
ORF1ab/nsp31878A1878AgcGgcA14AY.1210.000135
ORF1ab/nsp31878A1878AgcGgcA44AY.99.20.000369
ORF1ab/nsp31878A1878AgcGgcA44B.1.177.440.002076
ORF1ab/nsp31878A1878AgcGgcA24B.1.5960.000174
ORF1ab/nsp31878A1878AgcGgcA24B.1.617.10.000258
ORF1ab/nsp31878A1878AgcGgcA33AY.20.001068
ORF1ab/nsp31878A1878AgcGgcA23AY.390.000049
ORF1ab/nsp31878A1878AgcGgcA33AY.470.000093
ORF1ab/nsp31878A1878AgcGgcA23AY.50.000041
ORF1ab/nsp31878A1878AgcGgcA23B.1.177.730.001133
ORF1ab/nsp31878A1878AgcGgcA23B.1.2580.000133
ORF1ab/nsp31878A1878AgcGgcA13B.1.5260.000024
ORF1ab/nsp31878A1878AgcGgcA33P.1.40.00293
ORF1ab/nsp31878A1878AgcGgcA22AY.1180.000125
ORF1ab/nsp31878A1878AgcGgcA12AY.260.000028
ORF1ab/nsp31878A1878AgcGgcA22AY.5.30.000675
ORF1ab/nsp31878A1878AgcGgcA22AY.620.000871
ORF1ab/nsp31878A1878AgcGgcA22B0.000256
ORF1ab/nsp31878A1878AgcGgcA22B.1.1.1940.009901
ORF1ab/nsp31878A1878AgcGgcA22B.1.1.2140.000111
ORF1ab/nsp31878A1878AgcGgcA12B.1.1.3890.006061
ORF1ab/nsp31878A1878AgcGgcA12B.1.2430.00007
ORF1ab/nsp31878A1878AgcGgcA22B.1.466.20.000782
ORF1ab/nsp31878A1878AgcGgcA22P.1.140.000096
ORF1ab/nsp31878A1878AgcGgcA22Q.10.000253
ORF1ab/nsp31878A1878AgcGgcA11AN.10.02
ORF1ab/nsp31878A1878AgcGgcA11AY.120.000316
ORF1ab/nsp31878A1878AgcGgcA11AY.130.000161
ORF1ab/nsp31878A1878AgcGgcA11AY.23.10.000417
ORF1ab/nsp31878A1878AgcGgcA11AY.290.000016
ORF1ab/nsp31878A1878AgcGgcA11AY.39.10.00004
ORF1ab/nsp31878A1878AgcGgcA11AY.46.40.000165
ORF1ab/nsp31878A1878AgcGgcA11AY.5.40.000277
ORF1ab/nsp31878A1878AgcGgcA11AY.70.000196
ORF1ab/nsp31878A1878AgcGgcA11AY.980.000079
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.3280.016949
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.3480.000796
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.3720.000689
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.390.00051
ORF1ab/nsp31878A1878AgcGgcA11B.1.1.630.000386
ORF1ab/nsp31878A1878AgcGgcA11B.1.1600.000031
ORF1ab/nsp31878A1878AgcGgcA11B.1.177.860.000183
ORF1ab/nsp31878A1878AgcGgcA11B.1.4200.010417
ORF1ab/nsp31878A1878AgcGgcA11B.1.6230.000536

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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