CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1878 & Codon = gTg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31878A1878VA2696VnonsyngCggTg1029102918351-8353

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31878A1878VgCggTg10291029All0.000197
ORF1ab/nsp31878A1878VgCggTg598598B.1.1.70.000535
ORF1ab/nsp31878A1878VgCggTg9292AY.1030.000571
ORF1ab/nsp31878A1878VgCggTg7171AY.40.000111
ORF1ab/nsp31878A1878VgCggTg3131C.370.003598
ORF1ab/nsp31878A1878VgCggTg2121B.10.000192
ORF1ab/nsp31878A1878VgCggTg1818AY.430.00008
ORF1ab/nsp31878A1878VgCggTg1414B.1.20.000123
ORF1ab/nsp31878A1878VgCggTg1313B.1.617.20.000049
ORF1ab/nsp31878A1878VgCggTg1212AY.250.000072
ORF1ab/nsp31878A1878VgCggTg88B.1.130.019002
ORF1ab/nsp31878A1878VgCggTg77B.1.1.4640.010309
ORF1ab/nsp31878A1878VgCggTg77B.1.1770.000092
ORF1ab/nsp31878A1878VgCggTg77P.10.00011
ORF1ab/nsp31878A1878VgCggTg66AY.30.00006
ORF1ab/nsp31878A1878VgCggTg66B.1.1.1870.053097
ORF1ab/nsp31878A1878VgCggTg66B.1.4290.000141
ORF1ab/nsp31878A1878VgCggTg55AY.46.50.000992
ORF1ab/nsp31878A1878VgCggTg55B.1.10.000091
ORF1ab/nsp31878A1878VgCggTg44AY.1130.00057
ORF1ab/nsp31878A1878VgCggTg44AY.200.000155
ORF1ab/nsp31878A1878VgCggTg44AY.230.000279
ORF1ab/nsp31878A1878VgCggTg44B.1.1600.000125
ORF1ab/nsp31878A1878VgCggTg44B.1.2430.000278
ORF1ab/nsp31878A1878VgCggTg33AY.1020.00008
ORF1ab/nsp31878A1878VgCggTg33AY.390.000074
ORF1ab/nsp31878A1878VgCggTg33AY.4.20.000065
ORF1ab/nsp31878A1878VgCggTg33AY.440.000018
ORF1ab/nsp31878A1878VgCggTg33B.1.1790.011278
ORF1ab/nsp31878A1878VgCggTg33B.1.6050.017857
ORF1ab/nsp31878A1878VgCggTg33B.1.617.10.000387
ORF1ab/nsp31878A1878VgCggTg33D.20.000225
ORF1ab/nsp31878A1878VgCggTg22AY.1180.000125
ORF1ab/nsp31878A1878VgCggTg22AY.140.000176
ORF1ab/nsp31878A1878VgCggTg22AY.420.00008
ORF1ab/nsp31878A1878VgCggTg22AY.98.10.000097
ORF1ab/nsp31878A1878VgCggTg22B.1.1.2220.000408
ORF1ab/nsp31878A1878VgCggTg22B.1.1.500.001358
ORF1ab/nsp31878A1878VgCggTg22B.1.1.5190.000079
ORF1ab/nsp31878A1878VgCggTg22B.1.177.460.001837
ORF1ab/nsp31878A1878VgCggTg22B.1.177.720.00678
ORF1ab/nsp31878A1878VgCggTg22B.1.2390.002442
ORF1ab/nsp31878A1878VgCggTg22B.1.4270.000101
ORF1ab/nsp31878A1878VgCggTg22B.1.4660.046512
ORF1ab/nsp31878A1878VgCggTg11A.10.000282
ORF1ab/nsp31878A1878VgCggTg11A.40.012821
ORF1ab/nsp31878A1878VgCggTg11AM.40.003571
ORF1ab/nsp31878A1878VgCggTg11AP.10.001502
ORF1ab/nsp31878A1878VgCggTg11AY.1060.000335
ORF1ab/nsp31878A1878VgCggTg11AY.1090.00074
ORF1ab/nsp31878A1878VgCggTg11AY.1190.000035
ORF1ab/nsp31878A1878VgCggTg11AY.290.000016
ORF1ab/nsp31878A1878VgCggTg11AY.39.10.00004
ORF1ab/nsp31878A1878VgCggTg11AY.400.000964
ORF1ab/nsp31878A1878VgCggTg11AY.460.000104
ORF1ab/nsp31878A1878VgCggTg11AY.46.60.000072
ORF1ab/nsp31878A1878VgCggTg11AY.480.000465
ORF1ab/nsp31878A1878VgCggTg11AY.50.000021
ORF1ab/nsp31878A1878VgCggTg11AY.570.000656
ORF1ab/nsp31878A1878VgCggTg11AY.60.000041
ORF1ab/nsp31878A1878VgCggTg11AY.740.000116
ORF1ab/nsp31878A1878VgCggTg11AY.750.000056
ORF1ab/nsp31878A1878VgCggTg11AY.790.001211
ORF1ab/nsp31878A1878VgCggTg11B.1.1.390.00051
ORF1ab/nsp31878A1878VgCggTg11B.1.1.700.000341
ORF1ab/nsp31878A1878VgCggTg11B.1.177.180.00116
ORF1ab/nsp31878A1878VgCggTg11B.1.177.860.000183
ORF1ab/nsp31878A1878VgCggTg11B.1.177.90.001332
ORF1ab/nsp31878A1878VgCggTg11B.1.2400.000216
ORF1ab/nsp31878A1878VgCggTg11B.1.3050.002151
ORF1ab/nsp31878A1878VgCggTg11B.1.3130.006579
ORF1ab/nsp31878A1878VgCggTg11B.1.360.000146
ORF1ab/nsp31878A1878VgCggTg11B.1.4730.019231
ORF1ab/nsp31878A1878VgCggTg11B.1.5250.000113
ORF1ab/nsp31878A1878VgCggTg11B.1.5820.000491
ORF1ab/nsp31878A1878VgCggTg11B.400.000364
ORF1ab/nsp31878A1878VgCggTg11N.40.004255
ORF1ab/nsp31878A1878VgCggTg11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.