CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1875

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1875	D1875D	D2693D	syn	gaC	gaT	4739	4739	1	8342-8344
ORF1ab/nsp3	1875	D1875del	D2693del	del	GAC	---	176	176	1	8342-8344
ORF1ab/nsp3	1875	D1875Y	D2693Y	nonsyn	Gac	Tac	88	85	0.965909	8342-8344
ORF1ab/nsp3	1875	D1875Y	D2693Y	nonsyn	GaC	TaT	88	3	0.0340909	8342-8344
ORF1ab/nsp3	1875	D1875N	D2693N	nonsyn	Gac	Aac	45	45	1	8342-8344
ORF1ab/nsp3	1875	D1875G	D2693G	nonsyn	gAc	gGc	26	21	0.807692	8342-8344
ORF1ab/nsp3	1875	D1875G	D2693G	nonsyn	gAC	gGG	26	4	0.153846	8342-8344
ORF1ab/nsp3	1875	D1875G	D2693G	nonsyn	gAC	gGA	26	1	0.0384615	8342-8344
ORF1ab/nsp3	1875	D1875V	D2693V	nonsyn	gAc	gTc	20	19	0.95	8342-8344
ORF1ab/nsp3	1875	D1875V	D2693V	nonsyn	gAC	gTT	20	1	0.05	8342-8344
ORF1ab/nsp3	1875	D1875A	D2693A	nonsyn	gAc	gCc	19	18	0.947368	8342-8344
ORF1ab/nsp3	1875	D1875H	D2693H	nonsyn	Gac	Cac	19	14	0.736842	8342-8344
ORF1ab/nsp3	1875	D1875H	D2693H	nonsyn	GaC	CaT	19	5	0.263158	8342-8344
ORF1ab/nsp3	1875	D1875A	D2693A	nonsyn	gAC	gCG	19	1	0.0526316	8342-8344
ORF1ab/nsp3	1875	D1875E	D2693E	nonsyn	gaC	gaG	17	9	0.529412	8342-8344
ORF1ab/nsp3	1875	D1875E	D2693E	nonsyn	gaC	gaA	17	8	0.470588	8342-8344
ORF1ab/nsp3	1875	D1875R	D2693R	nonsyn	GAC	AGG	14	8	0.571429	8342-8344
ORF1ab/nsp3	1875	D1875R	D2693R	nonsyn	GAC	CGG	14	3	0.214286	8342-8344
ORF1ab/nsp3	1875	D1875R	D2693R	nonsyn	GAc	CGc	14	3	0.214286	8342-8344
ORF1ab/nsp3	1875	D1875del2	D2693del2	del	gAC	g--	12	9	0.75	8342-8344
ORF1ab/nsp3	1875	D1875del2	D2693del2	del	GAC	A--	12	2	0.166667	8342-8344
ORF1ab/nsp3	1875	D1875del2	D2693del2	del	GAc	--c	12	1	0.0833333	8342-8344
ORF1ab/nsp3	1875	D1875del1	D2693del1	del	Gac	-ac	9	5	0.555556	8342-8344
ORF1ab/nsp3	1875	D1875del1	D2693del1	del	gAc	g-c	9	1	0.111111	8342-8344
ORF1ab/nsp3	1875	D1875del1	D2693del1	del	gAC	g-T	9	1	0.111111	8342-8344
ORF1ab/nsp3	1875	D1875del1	D2693del1	del	GAC	-NN	9	1	0.111111	8342-8344
ORF1ab/nsp3	1875	D1875del1	D2693del1	del	gAC	g-N	9	1	0.111111	8342-8344
ORF1ab/nsp3	1875	D1875K	D2693K	nonsyn	GaC	AaA	7	6	0.857143	8342-8344
ORF1ab/nsp3	1875	D1875K	D2693K	nonsyn	GaC	AaG	7	1	0.142857	8342-8344
ORF1ab/nsp3	1875	D1875Q	D2693Q	nonsyn	GaC	CaG	3	3	1	8342-8344
ORF1ab/nsp3	1875	D1875F	D2693F	nonsyn	GAc	TTc	2	2	1	8342-8344
ORF1ab/nsp3	1875	D1875T	D2693T	nonsyn	GAc	ACc	1	1	1	8342-8344
ORF1ab/nsp3	1875	D1875S	D2693S	nonsyn	GAc	AGc	1	1	1	8342-8344

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4739	4739	All	0.000906
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1145	1145	B.1.1.7	0.001025
ORF1ab/nsp3	1875	D1875D	gaC	gaT	239	239	AY.4	0.000372
ORF1ab/nsp3	1875	D1875D	gaC	gaT	194	194	B.1.351	0.005767
ORF1ab/nsp3	1875	D1875del	GAC	---	176	176	All	0.000034
ORF1ab/nsp3	1875	D1875D	gaC	gaT	175	175	B.1.177	0.002304
ORF1ab/nsp3	1875	D1875D	gaC	gaT	160	160	B.1.2	0.001409
ORF1ab/nsp3	1875	D1875D	gaC	gaT	150	150	P.1	0.002363
ORF1ab/nsp3	1875	D1875D	gaC	gaT	148	148	B.1.617.2	0.000557
ORF1ab/nsp3	1875	D1875D	gaC	gaT	127	127	B.1	0.001163
ORF1ab/nsp3	1875	D1875D	gaC	gaT	123	123	AY.39.1	0.004872
ORF1ab/nsp3	1875	D1875D	gaC	gaT	117	117	AY.25	0.000704
ORF1ab/nsp3	1875	D1875D	gaC	gaT	112	112	AY.103	0.000695
ORF1ab/nsp3	1875	D1875D	gaC	gaT	110	110	AY.44	0.00067
ORF1ab/nsp3	1875	D1875D	gaC	gaT	109	109	AY.46.4	0.017931
ORF1ab/nsp3	1875	D1875D	gaC	gaT	104	104	AY.20	0.004042
ORF1ab/nsp3	1875	D1875D	gaC	gaT	90	90	AY.43	0.000399
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	85	88	All	0.000016
ORF1ab/nsp3	1875	D1875Y	GaC	TaT	3	88	All	0.000001
ORF1ab/nsp3	1875	D1875D	gaC	gaT	85	85	B.1.543	0.85
ORF1ab/nsp3	1875	D1875D	gaC	gaT	67	67	B.1.221	0.004759
ORF1ab/nsp3	1875	D1875D	gaC	gaT	66	66	AY.3	0.000656
ORF1ab/nsp3	1875	D1875D	gaC	gaT	58	58	AY.102	0.001538
ORF1ab/nsp3	1875	D1875D	gaC	gaT	57	57	AE.8	0.027873
ORF1ab/nsp3	1875	D1875del	GAC	---	56	56	B.1.1.7	0.00005
ORF1ab/nsp3	1875	D1875D	gaC	gaT	53	53	B.1.1.519	0.002105
ORF1ab/nsp3	1875	D1875D	gaC	gaT	51	51	AY.39	0.00126
ORF1ab/nsp3	1875	D1875D	gaC	gaT	51	51	AY.85	0.021786
ORF1ab/nsp3	1875	D1875N	Gac	Aac	45	45	All	0.000009
ORF1ab/nsp3	1875	D1875D	gaC	gaT	45	45	B.1.177.82	0.02148
ORF1ab/nsp3	1875	D1875D	gaC	gaT	43	43	AY.75	0.002409
ORF1ab/nsp3	1875	D1875D	gaC	gaT	42	42	B.1.1	0.000762
ORF1ab/nsp3	1875	D1875D	gaC	gaT	41	41	B.1.609	0.019655
ORF1ab/nsp3	1875	D1875D	gaC	gaT	40	40	AD.2	0.008758
ORF1ab/nsp3	1875	D1875D	gaC	gaT	34	34	AY.106	0.011386
ORF1ab/nsp3	1875	D1875D	gaC	gaT	33	33	AY.26	0.000934
ORF1ab/nsp3	1875	D1875D	gaC	gaT	31	31	AY.61	0.003248
ORF1ab/nsp3	1875	D1875D	gaC	gaT	30	30	B.1.160	0.000936
ORF1ab/nsp3	1875	D1875D	gaC	gaT	29	29	AY.34	0.002812
ORF1ab/nsp3	1875	D1875D	gaC	gaT	28	28	B.1.526	0.000658
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	27	27	B.1.1.7	0.000024
ORF1ab/nsp3	1875	D1875G	gAc	gGc	21	26	All	0.000004
ORF1ab/nsp3	1875	D1875G	gAC	gGG	4	26	All	0.000001
ORF1ab/nsp3	1875	D1875G	gAC	gGA	1	26	All	0
ORF1ab/nsp3	1875	D1875D	gaC	gaT	23	23	B.1.429	0.000541
ORF1ab/nsp3	1875	D1875D	gaC	gaT	22	22	AY.100	0.001012
ORF1ab/nsp3	1875	D1875D	gaC	gaT	21	21	P.1.14	0.001004
ORF1ab/nsp3	1875	D1875V	gAc	gTc	19	20	All	0.000004
ORF1ab/nsp3	1875	D1875V	gAC	gTT	1	20	All	0
ORF1ab/nsp3	1875	D1875A	gAc	gCc	18	19	All	0.000003
ORF1ab/nsp3	1875	D1875H	Gac	Cac	14	19	All	0.000003
ORF1ab/nsp3	1875	D1875H	GaC	CaT	5	19	All	0.000001
ORF1ab/nsp3	1875	D1875A	gAC	gCG	1	19	All	0
ORF1ab/nsp3	1875	D1875D	gaC	gaT	19	19	AY.4.5	0.002042
ORF1ab/nsp3	1875	D1875D	gaC	gaT	18	18	AY.120	0.000669
ORF1ab/nsp3	1875	D1875D	gaC	gaT	18	18	AY.42	0.000724
ORF1ab/nsp3	1875	D1875D	gaC	gaT	18	18	B.1.1.222	0.003672
ORF1ab/nsp3	1875	D1875E	gaC	gaG	9	17	All	0.000002
ORF1ab/nsp3	1875	D1875E	gaC	gaA	8	17	All	0.000002
ORF1ab/nsp3	1875	D1875D	gaC	gaT	17	17	AY.23	0.001186
ORF1ab/nsp3	1875	D1875D	gaC	gaT	17	17	B.1.1.240	0.079812
ORF1ab/nsp3	1875	D1875D	gaC	gaT	16	16	AY.79	0.01937
ORF1ab/nsp3	1875	D1875D	gaC	gaT	16	16	AY.84	0.006999
ORF1ab/nsp3	1875	D1875D	gaC	gaT	15	15	B.1.427	0.000757
ORF1ab/nsp3	1875	D1875R	GAC	AGG	8	14	All	0.000002
ORF1ab/nsp3	1875	D1875R	GAc	CGc	3	14	All	0.000001
ORF1ab/nsp3	1875	D1875R	GAC	CGG	3	14	All	0.000001
ORF1ab/nsp3	1875	D1875D	gaC	gaT	13	13	AY.5	0.000268
ORF1ab/nsp3	1875	D1875del2	gAC	g--	9	12	All	0.000002
ORF1ab/nsp3	1875	D1875del2	GAC	A--	2	12	All	0
ORF1ab/nsp3	1875	D1875del2	GAc	--c	1	12	All	0
ORF1ab/nsp3	1875	D1875D	gaC	gaT	12	12	AY.14	0.001056
ORF1ab/nsp3	1875	D1875D	gaC	gaT	12	12	AY.4.2	0.00026
ORF1ab/nsp3	1875	D1875D	gaC	gaT	12	12	B.1.1.368	0.037037
ORF1ab/nsp3	1875	D1875D	gaC	gaT	11	11	AY.117	0.00093
ORF1ab/nsp3	1875	D1875D	gaC	gaT	11	11	AY.119	0.000388
ORF1ab/nsp3	1875	D1875D	gaC	gaT	11	11	AY.48	0.005116
ORF1ab/nsp3	1875	D1875del	GAC	---	10	10	B.1	0.000092
ORF1ab/nsp3	1875	D1875D	gaC	gaT	10	10	B.1.1.50	0.006789
ORF1ab/nsp3	1875	D1875D	gaC	gaT	10	10	B.1.36	0.001459
ORF1ab/nsp3	1875	D1875D	gaC	gaT	10	10	B.1.637	0.000731
ORF1ab/nsp3	1875	D1875D	gaC	gaT	10	10	C.37	0.001161
ORF1ab/nsp3	1875	D1875D	gaC	gaT	10	10	P.2	0.001866
ORF1ab/nsp3	1875	D1875del1	Gac	-ac	5	9	All	0.000001
ORF1ab/nsp3	1875	D1875del1	gAc	g-c	1	9	All	0
ORF1ab/nsp3	1875	D1875del1	gAC	g-T	1	9	All	0
ORF1ab/nsp3	1875	D1875del1	gAC	g-N	1	9	All	0
ORF1ab/nsp3	1875	D1875del1	GAC	-NN	1	9	All	0
ORF1ab/nsp3	1875	D1875del	GAC	---	9	9	AY.25	0.000054
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	9	9	AZ.2	0.007389
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	9	9	B.1	0.000082
ORF1ab/nsp3	1875	D1875D	gaC	gaT	9	9	B.1.351.1	0.346154
ORF1ab/nsp3	1875	D1875D	gaC	gaT	9	9	P.1.7	0.002874
ORF1ab/nsp3	1875	D1875D	gaC	gaT	8	8	AY.27	0.000518
ORF1ab/nsp3	1875	D1875D	gaC	gaT	8	8	AY.5.4	0.002214
ORF1ab/nsp3	1875	D1875N	Gac	Aac	8	8	B.1.1.7	0.000007
ORF1ab/nsp3	1875	D1875K	GaC	AaA	6	7	All	0.000001
ORF1ab/nsp3	1875	D1875K	GaC	AaG	1	7	All	0
ORF1ab/nsp3	1875	D1875D	gaC	gaT	7	7	AY.33	0.000467
ORF1ab/nsp3	1875	D1875A	gAc	gCc	7	7	B.1.1.7	0.000006
ORF1ab/nsp3	1875	D1875V	gAc	gTc	7	7	B.1.177	0.000092
ORF1ab/nsp3	1875	D1875D	gaC	gaT	7	7	B.1.243	0.000487
ORF1ab/nsp3	1875	D1875D	gaC	gaT	7	7	B.1.258.17	0.000728
ORF1ab/nsp3	1875	D1875G	gAC	gGG	3	7	P.1	0.000047
ORF1ab/nsp3	1875	D1875G	gAc	gGc	3	7	P.1	0.000047
ORF1ab/nsp3	1875	D1875G	gAC	gGA	1	7	P.1	0.000016
ORF1ab/nsp3	1875	D1875D	gaC	gaT	7	7	R.1	0.00063
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	AY.29	0.000095
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	AY.54	0.000572
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	AY.6	0.000247
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	AY.9	0.000406
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	AY.98	0.000474
ORF1ab/nsp3	1875	D1875N	Gac	Aac	6	6	B.1	0.000055
ORF1ab/nsp3	1875	D1875del2	gAC	g--	5	6	B.1.1.7	0.000004
ORF1ab/nsp3	1875	D1875del2	GAc	--c	1	6	B.1.1.7	0.000001
ORF1ab/nsp3	1875	D1875K	GaC	AaA	6	6	B.1.2	0.000053
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	B.1.621	0.000531
ORF1ab/nsp3	1875	D1875D	gaC	gaT	6	6	D.2	0.00045
ORF1ab/nsp3	1875	D1875del	GAC	---	5	5	AY.4.5	0.000537
ORF1ab/nsp3	1875	D1875del	GAC	---	5	5	AY.43	0.000022
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	AY.45	0.000608
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	AY.46.6	0.000361
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	AY.71	0.002375
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	AY.88	0.004421
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	AY.91	0.003652
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	AY.99.2	0.000461
ORF1ab/nsp3	1875	D1875del	GAC	---	5	5	B.1.1	0.000091
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	B.1.1.214	0.000277
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	B.1.1.216	0.004452
ORF1ab/nsp3	1875	D1875E	gaC	gaA	4	5	B.1.1.7	0.000004
ORF1ab/nsp3	1875	D1875E	gaC	gaG	1	5	B.1.1.7	0.000001
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	B.1.503	0.012438
ORF1ab/nsp3	1875	D1875D	gaC	gaT	5	5	B.1.596	0.000436
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	4	5	B.1.617.2	0.000015
ORF1ab/nsp3	1875	D1875Y	GaC	TaT	1	5	B.1.617.2	0.000004
ORF1ab/nsp3	1875	D1875del	GAC	---	5	5	P.1	0.000079
ORF1ab/nsp3	1875	D1875R	GAC	AGG	4	4		0.222222
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	AY.113	0.00057
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	AY.3.1	0.000341
ORF1ab/nsp3	1875	D1875del	GAC	---	4	4	AY.4	0.000006
ORF1ab/nsp3	1875	D1875A	gAc	gCc	4	4	AY.43	0.000018
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	AY.95	0.003044
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B	0.000511
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.1.269	0.005413
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.1.28	0.001245
ORF1ab/nsp3	1875	D1875N	Gac	Aac	4	4	B.1.1.39	0.002039
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.1.63	0.001543
ORF1ab/nsp3	1875	D1875H	Gac	Cac	4	4	B.1.1.7	0.000004
ORF1ab/nsp3	1875	D1875del	GAC	---	4	4	B.1.177	0.000053
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.177.43	0.005908
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.234	0.000528
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.258	0.000266
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.1.36.17	0.001976
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	B.6	0.00364
ORF1ab/nsp3	1875	D1875del	GAC	---	4	4	C.37	0.000464
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	3	4	D.2	0.000225
ORF1ab/nsp3	1875	D1875Y	GaC	TaT	1	4	D.2	0.000075
ORF1ab/nsp3	1875	D1875R	GAc	CGc	2	4	P.1	0.000032
ORF1ab/nsp3	1875	D1875R	GAC	CGG	2	4	P.1	0.000032
ORF1ab/nsp3	1875	D1875del	GAC	---	4	4	P.1.15	0.000929
ORF1ab/nsp3	1875	D1875D	gaC	gaT	4	4	Q.1	0.000505
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	A	0.001161
ORF1ab/nsp3	1875	D1875Q	GaC	CaG	3	3	All	0.000001
ORF1ab/nsp3	1875	D1875G	gAc	gGc	3	3	AY.100	0.000138
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.114	0.000693
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.116.1	0.000934
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.32	0.001597
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.36	0.000445
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	3	3	AY.4	0.000005
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.5.3	0.001012
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.7	0.000588
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	AY.9.2	0.00011
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	3	3	B.1.1	0.000054
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.1.298	0.002586
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.1.416	0.002715
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.1.54	0.009063
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.177.10	0.002634
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.177.21	0.000229
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.177.5	0.003727
ORF1ab/nsp3	1875	D1875del	GAC	---	3	3	B.1.2	0.000026
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.351.2	0.000908
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.466.2	0.001174
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.524	0.004219
ORF1ab/nsp3	1875	D1875D	gaC	gaT	3	3	B.1.556	0.022556
ORF1ab/nsp3	1875	D1875E	gaC	gaG	3	3	P.1	0.000047
ORF1ab/nsp3	1875	D1875del2	GAC	A--	2	2		0.111111
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2		0.111111
ORF1ab/nsp3	1875	D1875F	GAc	TTc	2	2	All	0
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.1	0.000791
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.101	0.000981
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.104	0.003968
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.108	0.002205
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.118	0.000125
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	AY.119	0.000071
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.12	0.000632
ORF1ab/nsp3	1875	D1875A	gAc	gCc	2	2	AY.120	0.000074
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.121	0.000271
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.13	0.000322
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.16.1	0.00094
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	2	2	AY.23	0.000139
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	2	2	AY.23.1	0.000835
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.24	0.000862
ORF1ab/nsp3	1875	D1875G	gAc	gGc	2	2	AY.3	0.00002
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.34.1	0.00102
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	2	AY.43	0.000004
ORF1ab/nsp3	1875	D1875Y	GaC	TaT	1	2	AY.43	0.000004
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.46	0.000208
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.47	0.000062
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	AY.5	0.000041
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.64	0.00119
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	AY.7.2	0.001119
ORF1ab/nsp3	1875	D1875G	gAc	gGc	2	2	B.1	0.000018
ORF1ab/nsp3	1875	D1875del1	gAc	g-c	1	2	B.1	0.000009
ORF1ab/nsp3	1875	D1875A	gAC	gCG	1	2	B.1	0.000009
ORF1ab/nsp3	1875	D1875del1	gAC	g-T	1	2	B.1	0.000009
ORF1ab/nsp3	1875	D1875A	gAc	gCc	1	2	B.1	0.000009
ORF1ab/nsp3	1875	D1875N	Gac	Aac	2	2	B.1.1.161	0.007067
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	B.1.1.236	0.013793
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.1.243	0.008163
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.1.255	0.006061
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.1.279	0.002242
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.1.306	0.000877
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	B.1.1.311	0.000716
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	2	2	B.1.1.39	0.001019
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.1.432	0.002532
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.1.434	0.000697
ORF1ab/nsp3	1875	D1875V	gAc	gTc	2	2	B.1.1.46	0.008734
ORF1ab/nsp3	1875	D1875E	gaC	gaG	2	2	B.1.1.519	0.000079
ORF1ab/nsp3	1875	D1875R	GAC	AGG	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	1875	D1875N	Gac	Aac	2	2	B.1.157	0.00597
ORF1ab/nsp3	1875	D1875N	Gac	Aac	2	2	B.1.160	0.000062
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.160.7	0.004158
ORF1ab/nsp3	1875	D1875N	Gac	Aac	2	2	B.1.177	0.000026
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.177.79	0.004684
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	B.1.177.87	0.001456
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	2	2	B.1.2	0.000018
ORF1ab/nsp3	1875	D1875N	Gac	Aac	2	2	B.1.221	0.000142
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.221.1	0.005814
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.240	0.000431
ORF1ab/nsp3	1875	D1875N	Gac	Aac	2	2	B.1.258	0.000133
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.36.8	0.002
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.575	0.000607
ORF1ab/nsp3	1875	D1875del	GAC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.628	0.000705
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	B.1.93	0.001867
ORF1ab/nsp3	1875	D1875H	GaC	CaT	2	2	C.16	0.002121
ORF1ab/nsp3	1875	D1875H	Gac	Cac	2	2	P.1	0.000032
ORF1ab/nsp3	1875	D1875Q	GaC	CaG	2	2	P.1	0.000032
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	P.1.15	0.000465
ORF1ab/nsp3	1875	D1875G	gAC	gGG	1	2	P.2	0.000187
ORF1ab/nsp3	1875	D1875R	GAc	CGc	1	2	P.2	0.000187
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	2	P.2	0.000187
ORF1ab/nsp3	1875	D1875R	GAC	CGG	1	2	P.2	0.000187
ORF1ab/nsp3	1875	D1875D	gaC	gaT	2	2	Q.8	0.00033
ORF1ab/nsp3	1875	D1875del1	Gac	-ac	1	1	A	0.000387
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	A	0.000387
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	A.2	0.000662
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	A.2.4	0.003367
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	A.28	0.002646
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AD.2	0.000219
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AL.1	0.012987
ORF1ab/nsp3	1875	D1875S	GAc	AGc	1	1	All	0
ORF1ab/nsp3	1875	D1875T	GAc	ACc	1	1	All	0
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.101	0.00049
ORF1ab/nsp3	1875	D1875H	GaC	CaT	1	1	AY.102	0.000027
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	AY.103	0.000006
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.108	0.001103
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	AY.110	0.000113
ORF1ab/nsp3	1875	D1875H	GaC	CaT	1	1	AY.113	0.000142
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	AY.119	0.000035
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	AY.12	0.000316
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.120	0.000037
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.120.1	0.000321
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.19	0.00114
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.19	0.00114
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.20	0.000039
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	AY.23	0.00007
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	AY.23	0.00007
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	AY.23	0.00007
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	AY.25	0.000006
ORF1ab/nsp3	1875	D1875E	gaC	gaA	1	1	AY.3	0.00001
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.30	0.000396
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.33	0.000067
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.34.1	0.00051
ORF1ab/nsp3	1875	D1875A	gAc	gCc	1	1	AY.4	0.000002
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	AY.4	0.000002
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	1875	D1875del1	Gac	-ac	1	1	AY.43	0.000004
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	AY.43	0.000004
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	AY.43	0.000004
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	AY.44	0.000006
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	AY.44	0.000006
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	AY.44	0.000006
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	AY.46	0.000104
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1875	D1875T	GAc	ACc	1	1	AY.5	0.000021
ORF1ab/nsp3	1875	D1875E	gaC	gaG	1	1	AY.5	0.000021
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.5.3	0.000337
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.52	0.000814
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.58	0.000907
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.59	0.00053
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.60	0.000938
ORF1ab/nsp3	1875	D1875del2	gAC	g--	1	1	AY.61	0.000105
ORF1ab/nsp3	1875	D1875del1	Gac	-ac	1	1	AY.66	0.00107
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.67	0.000464
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.68	0.000274
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.70	0.000209
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.74	0.000116
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.81	0.001992
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.84	0.000437
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.86	0.00083
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	AY.93	0.000273
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	AY.98.1	0.000048
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AY.99	0.001049
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	AZ.2	0.000821
ORF1ab/nsp3	1875	D1875del2	gAC	g--	1	1	AZ.2	0.000821
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B	0.000128
ORF1ab/nsp3	1875	D1875A	gAc	gCc	1	1	B	0.000128
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	B	0.000128
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B	0.000128
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	B.1	0.000009
ORF1ab/nsp3	1875	D1875E	gaC	gaA	1	1	B.1	0.000009
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1875	D1875F	GAc	TTc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1875	D1875R	GAC	AGG	1	1	B.1.1	0.000018
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.157	0.000913
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.1.189	0.001513
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.219	0.005
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.229	0.005747
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.236	0.006897
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.258	0.003257
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.1.279	0.001121
ORF1ab/nsp3	1875	D1875E	gaC	gaG	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.302	0.002075
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.316	0.000925
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.335	0.012987
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.348	0.000796
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1875	D1875A	gAc	gCc	1	1	B.1.1.411	0.014706
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.420	0.001006
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.507	0.008696
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1875	D1875F	GAc	TTc	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.1.526	0.003546
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1875	D1875del1	gAC	g-N	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1875	D1875S	GAc	AGc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1875	D1875R	GAC	AGG	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.110.3	0.000718
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.111	0.001175
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.126	0.001276
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.158	0.02381
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.160	0.000031
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.160.14	0.002119
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.160.15	0.00495
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.160.16	0.000929
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.160.30	0.002976
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.160.7	0.002079
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.160.8	0.001289
ORF1ab/nsp3	1875	D1875del2	gAC	g--	1	1	B.1.177	0.000013
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.177	0.000013
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.10	0.000878
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	B.1.177.19	0.001431
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.177.41	0.0025
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.177.43	0.001477
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.5	0.001242
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.177.53	0.002392
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.178	0.02381
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.179	0.003759
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	B.1.2	0.000009
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.206	0.000816
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.214.3	0.007143
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.218	0.005155
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.234	0.000132
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.234	0.000132
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.236	0.002053
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.236	0.002053
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.243	0.00007
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.254	0.025
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.258	0.000067
ORF1ab/nsp3	1875	D1875del2	gAC	g--	1	1	B.1.258	0.000067
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.279	0.000514
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.293	0.0125
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.320	0.001245
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.326	0.007576
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.340	0.004292
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	B.1.351.2	0.000303
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	1875	D1875del1	Gac	-ac	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	B.1.362	0.001541
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.375	0.00082
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.396	0.000706
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.400	0.000429
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.404	0.001302
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.406	0.006061
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.409	0.000781
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.424	0.008065
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.425	0.002994
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	B.1.427	0.00005
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	B.1.429	0.000024
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.436	0.001029
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.452	0.013699
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.456	0.003268
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.467	0.04
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.468	0.005714
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.471	0.002732
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.525	0.000113
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.525	0.000113
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.539	0.017544
ORF1ab/nsp3	1875	D1875N	Gac	Aac	1	1	B.1.565	0.00081
ORF1ab/nsp3	1875	D1875V	gAc	gTc	1	1	B.1.595	0.000261
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	B.1.596	0.000087
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.596	0.000087
ORF1ab/nsp3	1875	D1875E	gaC	gaA	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1875	D1875del1	Gac	-ac	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1875	D1875H	GaC	CaT	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1875	D1875K	GaC	AaG	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.1.631	0.003367
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.3	0.000831
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	B.31	0.003731
ORF1ab/nsp3	1875	D1875A	gAc	gCc	1	1	B.40	0.000364
ORF1ab/nsp3	1875	D1875G	gAc	gGc	1	1	B.55	0.00295
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	C.16	0.00106
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	C.17	0.055556
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	C.18	0.002591
ORF1ab/nsp3	1875	D1875V	gAC	gTT	1	1	C.35	0.000774
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	C.36.3	0.000567
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	C.37.1	0.002618
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	C.39	0.018868
ORF1ab/nsp3	1875	D1875E	gaC	gaA	1	1	D.2	0.000075
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	D.2	0.000075
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	N.9	0.005952
ORF1ab/nsp3	1875	D1875del1	GAC	-NN	1	1	P.1	0.000016
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	P.1.1	0.000318
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	P.1.17	0.000162
ORF1ab/nsp3	1875	D1875Y	Gac	Tac	1	1	P.1.17	0.000162
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	P.1.7	0.000319
ORF1ab/nsp3	1875	D1875E	gaC	gaG	1	1	P.2	0.000187
ORF1ab/nsp3	1875	D1875H	Gac	Cac	1	1	P.2	0.000187
ORF1ab/nsp3	1875	D1875Q	GaC	CaG	1	1	P.2	0.000187
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	Q.1	0.000126
ORF1ab/nsp3	1875	D1875del	GAC	---	1	1	Q.2	0.000613
ORF1ab/nsp3	1875	D1875D	gaC	gaT	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.