CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1872 | A1872V | A2690V | nonsyn | gCt | gTt | 2177 | 2177 | 1 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872A | A2690A | syn | gcT | gcC | 315 | 229 | 0.726984 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872A | A2690A | syn | gcT | gcG | 315 | 65 | 0.206349 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872A | A2690A | syn | gcT | gcA | 315 | 21 | 0.0666667 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872del | A2690del | del | GCT | --- | 129 | 129 | 1 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872del1 | A2690del1 | del | gcT | gc- | 13 | 11 | 0.846154 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872del1 | A2690del1 | del | Gct | -ct | 13 | 2 | 0.153846 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872del2 | A2690del2 | del | gCT | g-- | 7 | 6 | 0.857143 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872del2 | A2690del2 | del | GCt | --t | 7 | 1 | 0.142857 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872P | A2690P | nonsyn | Gct | Cct | 6 | 6 | 1 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872D | A2690D | nonsyn | gCt | gAt | 4 | 4 | 1 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872S | A2690S | nonsyn | Gct | Tct | 3 | 3 | 1 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872N | A2690N | nonsyn | GCt | AAt | 2 | 1 | 0.5 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872N | A2690N | nonsyn | GCT | AAC | 2 | 1 | 0.5 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872I | A2690I | nonsyn | GCt | ATt | 1 | 1 | 1 | 8333-8335 |
ORF1ab/nsp3 | 1872 | A1872T | A2690T | nonsyn | Gct | Act | 1 | 1 | 1 | 8333-8335 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2177 | 2177 | All | 0.000416 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 229 | 315 | All | 0.000044 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 65 | 315 | All | 0.000012 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcA | 21 | 315 | All | 0.000004 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 218 | 218 | B.1.617.2 | 0.000821 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 178 | 178 | B.1.1.7 | 0.000159 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 177 | 177 | B.1.2 | 0.001559 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 142 | 142 | B.1.544 | 0.855422 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 129 | 129 | All | 0.000025 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 122 | 122 | B.1.221 | 0.008666 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 118 | 118 | B.1.480 | 0.293532 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 108 | 108 | AY.100 | 0.004969 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 107 | 107 | AY.4 | 0.000167 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 89 | 89 | B.1.396 | 0.062809 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 69 | 69 | B.1 | 0.000632 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 32 | 62 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 30 | 62 | B.1.1.7 | 0.000027 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 59 | 59 | AY.26 | 0.00167 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 51 | 51 | B.1.1.7 | 0.000046 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 48 | 48 | AY.44 | 0.000292 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 48 | 48 | AY.46.6 | 0.003466 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 43 | 43 | B.1.1.25 | 0.024446 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 37 | 37 | B.1.1 | 0.000671 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 34 | 34 | AY.25 | 0.000205 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 30 | 30 | B.1.428.2 | 1 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 28 | 28 | AY.46 | 0.002914 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 26 | 26 | B.1.1.39 | 0.013252 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 24 | 24 | AU.1 | 0.03038 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 21 | 21 | B.1.1.317 | 0.008646 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcA | 16 | 21 | P.1 | 0.000252 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 3 | 21 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 21 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 19 | 19 | B.1.1.63 | 0.00733 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 17 | 17 | AY.98 | 0.001343 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 15 | 15 | B.1.240 | 0.003233 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 15 | 15 | P.1.17 | 0.002426 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 10 | 14 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcA | 3 | 14 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 1 | 14 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 11 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1872 | A1872del1 | Gct | -ct | 2 | 13 | All | 0 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 13 | 13 | B.1.160.20 | 0.116071 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 12 | 12 | B | 0.001534 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 9 | 12 | B.1 | 0.000082 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcA | 2 | 12 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 1 | 12 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 11 | 11 | B.1.1.337 | 0.039568 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 11 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 5 | 11 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 9 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 3 | 9 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 9 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 3 | 9 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 9 | 9 | B.1.1.294 | 0.011392 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 8 | 8 | B.1.635 | 0.140351 |
ORF1ab/nsp3 | 1872 | A1872del2 | gCT | g-- | 6 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1872 | A1872del2 | GCt | --t | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 6 | 7 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 7 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1872 | A1872P | Gct | Cct | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 6 | 6 | AM.4 | 0.021429 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 3 | 5 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 2 | 5 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 5 | 5 | B.1.1.316 | 0.004625 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp3 | 1872 | A1872D | gCt | gAt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 4 | 4 | B.1.159 | 0.04878 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 4 | 4 | N.4 | 0.017021 |
ORF1ab/nsp3 | 1872 | A1872S | Gct | Tct | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.1.298 | 0.002586 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp3 | 1872 | A1872N | GCT | AAC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1872 | A1872N | GCt | AAt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 2 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1872 | A1872P | Gct | Cct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1872 | A1872D | gCt | gAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.1.225 | 0.014388 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1872 | A1872P | Gct | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1872 | A1872del2 | gCT | g-- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1872 | A1872del2 | gCT | g-- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1872 | A1872del1 | Gct | -ct | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1872 | A1872del2 | GCt | --t | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1872 | A1872I | GCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1872 | A1872T | Gct | Act | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1872 | A1872del2 | gCT | g-- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1872 | A1872P | Gct | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1872 | A1872S | Gct | Tct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1872 | A1872N | GCT | AAC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp3 | 1872 | A1872T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1872 | A1872S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.177.71 | 0.010101 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1872 | A1872D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1872 | A1872S | Gct | Tct | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1872 | A1872N | GCt | AAt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1872 | A1872D | gCt | gAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1872 | A1872I | GCt | ATt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1872 | A1872del2 | gCT | g-- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1872 | A1872P | Gct | Cct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1872 | A1872A | gcT | gcC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1872 | A1872del1 | gcT | gc- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1872 | A1872del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1872 | A1872V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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