CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1869 | D1869D | D2687D | syn | gaC | gaT | 16064 | 16064 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869del | D2687del | del | GAC | --- | 124 | 124 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869Y | D2687Y | nonsyn | Gac | Tac | 15 | 15 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869H | D2687H | nonsyn | Gac | Cac | 13 | 13 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869E | D2687E | nonsyn | gaC | gaA | 13 | 9 | 0.692308 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869E | D2687E | nonsyn | gaC | gaG | 13 | 4 | 0.307692 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869G | D2687G | nonsyn | gAc | gGc | 8 | 7 | 0.875 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869G | D2687G | nonsyn | gAC | gGA | 8 | 1 | 0.125 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869N | D2687N | nonsyn | Gac | Aac | 7 | 7 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869A | D2687A | nonsyn | gAc | gCc | 6 | 4 | 0.666667 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869A | D2687A | nonsyn | gAC | gCA | 6 | 2 | 0.333333 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869V | D2687V | nonsyn | gAc | gTc | 5 | 3 | 0.6 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869K | D2687K | nonsyn | GaC | AaA | 5 | 3 | 0.6 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869K | D2687K | nonsyn | GaC | AaG | 5 | 2 | 0.4 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869V | D2687V | nonsyn | gAC | gTG | 5 | 1 | 0.2 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869V | D2687V | nonsyn | gAC | gTA | 5 | 1 | 0.2 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869T | D2687T | nonsyn | GAc | ACc | 4 | 2 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869T | D2687T | nonsyn | GAC | ACA | 4 | 2 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869X | D2687X | nonsyn | GaC | TaA | 4 | 2 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869X | D2687X | nonsyn | GAC | TGA | 4 | 1 | 0.25 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869X | D2687X | nonsyn | GaC | TaG | 4 | 1 | 0.25 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869del2 | D2687del2 | del | gAC | g-- | 3 | 2 | 0.666667 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869del2 | D2687del2 | del | GAc | --c | 3 | 1 | 0.333333 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869C | D2687C | nonsyn | GAc | TGc | 2 | 2 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869M | D2687M | nonsyn | GAC | ATG | 2 | 2 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869Q | D2687Q | nonsyn | GaC | CaG | 2 | 1 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869Q | D2687Q | nonsyn | GaC | CaA | 2 | 1 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869I | D2687I | nonsyn | GAc | ATc | 2 | 1 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869I | D2687I | nonsyn | GAC | ATA | 2 | 1 | 0.5 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869R | D2687R | nonsyn | GAc | CGc | 1 | 1 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869del1 | D2687del1 | del | GAC | -NN | 1 | 1 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869L | D2687L | nonsyn | GAc | CTc | 1 | 1 | 1 | 8324-8326 |
ORF1ab/nsp3 | 1869 | D1869S | D2687S | nonsyn | GAc | TCc | 1 | 1 | 1 | 8324-8326 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 16064 | 16064 | All | 0.003072 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 11112 | 11112 | AY.46.6 | 0.802368 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1102 | 1102 | B.1.1.7 | 0.000987 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 376 | 376 | AY.43 | 0.001666 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 320 | 320 | AY.4 | 0.000498 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 302 | 302 | AY.25 | 0.001816 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 301 | 301 | B.1.617.2 | 0.001133 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 244 | 244 | P.1 | 0.003844 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 223 | 223 | AY.44 | 0.001357 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 201 | 201 | AY.5 | 0.00415 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 130 | 130 | B.1.177 | 0.001712 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 124 | 124 | All | 0.000024 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 103 | 103 | B.1.2 | 0.000907 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 92 | 92 | B.1 | 0.000843 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 79 | 79 | B.1.177.80 | 0.151052 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 73 | 73 | AY.33 | 0.004875 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 72 | 72 | B.1.429 | 0.001694 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 59 | 59 | AY.102 | 0.001564 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 47 | 47 | AY.103 | 0.000292 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 46 | 46 | B.1.637 | 0.003361 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 45 | 45 | AY.96 | 0.093361 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 44 | 44 | B.1.243 | 0.003062 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 28 | 28 | AB.1 | 0.229508 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 27 | 27 | AE.8 | 0.013203 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 27 | 27 | AY.63 | 0.010445 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 26 | 26 | AY.119 | 0.000918 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 23 | 23 | B.1.1 | 0.000417 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 22 | 22 | B.1.1.519 | 0.000874 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 21 | 21 | B.1.241 | 0.017045 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 21 | 21 | B.1.36.36 | 0.012643 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 20 | 20 | AY.75 | 0.00112 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 20 | 20 | B.1.177.56 | 0.013351 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 19 | 19 | B.1.1.37 | 0.003664 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 19 | 19 | B.1.258.3 | 0.031826 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 19 | 19 | B.1.346 | 0.024902 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 17 | 17 | AY.39 | 0.00042 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 15 | 15 | All | 0.000003 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 15 | 15 | B.1.258 | 0.000998 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 14 | 14 | AY.46 | 0.001457 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 14 | 14 | AY.98.1 | 0.000678 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 14 | 14 | B.1.9.5 | 0.079545 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 13 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaA | 9 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaG | 4 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 12 | 12 | AY.74 | 0.001388 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 12 | 12 | B.1.177.8 | 0.009029 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 10 | 10 | B.1.1.348 | 0.007962 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 10 | 10 | B.1.1.389 | 0.060606 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 10 | 10 | L.3 | 0.035461 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 9 | 9 | AY.92 | 0.002585 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1869 | D1869G | gAc | gGc | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869G | gAC | gGA | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 8 | 8 | AY.19 | 0.009122 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1869 | D1869N | Gac | Aac | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 7 | 7 | AY.101 | 0.003433 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 7 | 7 | AY.114 | 0.001618 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 7 | 7 | AY.116 | 0.002007 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1869 | D1869G | gAc | gGc | 6 | 7 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1869 | D1869G | gAC | gGA | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1869 | D1869A | gAc | gCc | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869A | gAC | gCA | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaA | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaG | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | B.1.36.18 | 0.002521 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | P.1.1 | 0.001906 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp3 | 1869 | D1869V | gAc | gTc | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869K | GaC | AaA | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869K | GaC | AaG | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869V | gAC | gTA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869V | gAC | gTG | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | AY.7 | 0.00098 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1869 | D1869N | Gac | Aac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | B.1.1.51 | 0.008591 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1869 | D1869T | GAc | ACc | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869X | GaC | TaA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869T | GAC | ACA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869X | GaC | TaG | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869X | GAC | TGA | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1869 | D1869A | gAc | gCc | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869X | GaC | TaA | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869T | GAC | ACA | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869T | GAc | ACc | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869A | gAC | gCA | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869X | GaC | TaG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869X | GAC | TGA | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | B.1.399 | 0.007737 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 1869 | D1869del2 | gAC | g-- | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869del2 | GAc | --c | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.1.44 | 0.007229 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.177.19 | 0.004292 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | B.1.3 | 0.007853 |
ORF1ab/nsp3 | 1869 | D1869V | gAC | gTA | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869V | gAc | gTc | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869V | gAC | gTG | 1 | 3 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1869 | D1869C | GAc | TGc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869M | GAC | ATG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869I | GAC | ATA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869Q | GaC | CaG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869Q | GaC | CaA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869I | GAc | ATc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1869 | D1869K | GaC | AaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869C | GAc | TGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869Q | GaC | CaA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869Q | GaC | CaG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.1.258 | 0.006515 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.177.38 | 0.020833 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaG | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaA | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869K | GaC | AaA | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869I | GAC | ATA | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869I | GAc | ATc | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869K | GaC | AaG | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1869 | D1869L | GAc | CTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869S | GAc | TCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869del1 | GAC | -NN | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869R | GAc | CGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1869 | D1869G | gAc | gGc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1869 | D1869del1 | GAC | -NN | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1869 | D1869L | GAc | CTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1869 | D1869V | gAc | gTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1869 | D1869R | GAc | CGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1869 | D1869M | GAC | ATG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869K | GaC | AaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869A | gAc | gCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp3 | 1869 | D1869del2 | gAC | g-- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.290 | 0.018182 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1869 | D1869S | GAc | TCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869del2 | gAC | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.116 | 0.011628 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaA | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.407 | 0.035714 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1869 | D1869M | GAC | ATG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869N | Gac | Aac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.542 | 0.03125 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1869 | D1869N | Gac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp3 | 1869 | D1869V | gAc | gTc | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1869 | D1869E | gaC | gaA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1869 | D1869H | Gac | Cac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1869 | D1869A | gAc | gCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1869 | D1869Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1869 | D1869del2 | GAc | --c | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1869 | D1869del | GAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1869 | D1869D | gaC | gaT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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