CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1868

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31868R1868RR2686RsyncgTcgC179117020.9503078321-8323
ORF1ab/nsp31868R1868RR2686RsyncgTcgG1791510.02847578321-8323
ORF1ab/nsp31868R1868RR2686RsyncgTcgA1791310.01730888321-8323
ORF1ab/nsp31868R1868RR2686RsynCgTAgA179160.003350088321-8323
ORF1ab/nsp31868R1868RR2686RsynCgTAgG179110.0005583478321-8323
ORF1ab/nsp31868R1868HR2686HnonsyncGtcAt7757720.9961298321-8323
ORF1ab/nsp31868R1868HR2686HnonsyncGTcAC77530.003870978321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGtcCt2402300.9583338321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGTcCA24050.02083338321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGTcCG24040.01666678321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGTcCC24010.004166678321-8323
ORF1ab/nsp31868R1868delR2686deldelCGT---13013018321-8323
ORF1ab/nsp31868R1868LR2686LnonsyncGtcTt30240.88321-8323
ORF1ab/nsp31868R1868LR2686LnonsyncGTcTA3020.06666678321-8323
ORF1ab/nsp31868R1868LR2686LnonsynCGTTTA3020.06666678321-8323
ORF1ab/nsp31868R1868LR2686LnonsyncGTcTG3010.03333338321-8323
ORF1ab/nsp31868R1868LR2686LnonsynCGTTTG3010.03333338321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCgtAgt21170.8095248321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCgTAgC2120.09523818321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCGtTCt2110.0476198321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCGTTCA2110.0476198321-8323
ORF1ab/nsp31868R1868CR2686CnonsynCgtTgt171718321-8323
ORF1ab/nsp31868R1868NR2686NnonsynCGtAAt970.7777788321-8323
ORF1ab/nsp31868R1868TR2686TnonsynCGtACt940.4444448321-8323
ORF1ab/nsp31868R1868TR2686TnonsynCGTACA940.4444448321-8323
ORF1ab/nsp31868R1868NR2686NnonsynCGTAAC920.2222228321-8323
ORF1ab/nsp31868R1868TR2686TnonsynCGTACC910.1111118321-8323
ORF1ab/nsp31868R1868QR2686QnonsyncGTcAA740.5714298321-8323
ORF1ab/nsp31868R1868QR2686QnonsyncGTcAG730.4285718321-8323
ORF1ab/nsp31868R1868GR2686GnonsynCgtGgt530.68321-8323
ORF1ab/nsp31868R1868XR2686XnonsynCGTTAG520.48321-8323
ORF1ab/nsp31868R1868XR2686XnonsynCgTTgA520.48321-8323
ORF1ab/nsp31868R1868GR2686GnonsynCgTGgA510.28321-8323
ORF1ab/nsp31868R1868GR2686GnonsynCgTGgG510.28321-8323
ORF1ab/nsp31868R1868XR2686XnonsynCGTTAA510.28321-8323
ORF1ab/nsp31868R1868KR2686KnonsynCGTAAA430.758321-8323
ORF1ab/nsp31868R1868KR2686KnonsynCGTAAG410.258321-8323
ORF1ab/nsp31868R1868FR2686FnonsynCGtTTt320.6666678321-8323
ORF1ab/nsp31868R1868del1R2686del1delCgt-gt310.3333338321-8323
ORF1ab/nsp31868R1868FR2686FnonsynCGTTTC310.3333338321-8323
ORF1ab/nsp31868R1868del1R2686del1delcgTcg-310.3333338321-8323
ORF1ab/nsp31868R1868del1R2686del1delcGtc-t310.3333338321-8323
ORF1ab/nsp31868R1868VR2686VnonsynCGTGTA310.3333338321-8323
ORF1ab/nsp31868R1868VR2686VnonsynCGtGTt310.3333338321-8323
ORF1ab/nsp31868R1868VR2686VnonsynCGTGTG310.3333338321-8323
ORF1ab/nsp31868R1868del2R2686del2delcGTc--2218321-8323
ORF1ab/nsp31868R1868ER2686EnonsynCGTGAA210.58321-8323
ORF1ab/nsp31868R1868ER2686EnonsynCGTGAG210.58321-8323
ORF1ab/nsp31868R1868WR2686WnonsynCgTTgG1118321-8323
ORF1ab/nsp31868R1868YR2686YnonsynCGtTAt1118321-8323
ORF1ab/nsp31868R1868DR2686DnonsynCGtGAt1118321-8323
ORF1ab/nsp31868R1868IR2686InonsynCGtATt1118321-8323

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31868R1868RcgTcgC17021791All0.000326
ORF1ab/nsp31868R1868RcgTcgG511791All0.00001
ORF1ab/nsp31868R1868RcgTcgA311791All0.000006
ORF1ab/nsp31868R1868RCgTAgA61791All0.000001
ORF1ab/nsp31868R1868RCgTAgG11791All0
ORF1ab/nsp31868R1868HcGtcAt772775All0.000148
ORF1ab/nsp31868R1868HcGTcAC3775All0.000001
ORF1ab/nsp31868R1868RcgTcgC488488B.1.5250.055222
ORF1ab/nsp31868R1868HcGtcAt338338AY.40.000526
ORF1ab/nsp31868R1868RcgTcgC325336B.1.1.70.000291
ORF1ab/nsp31868R1868RcgTcgG8336B.1.1.70.000007
ORF1ab/nsp31868R1868RcgTcgA3336B.1.1.70.000003
ORF1ab/nsp31868R1868PcGtcCt230240All0.000044
ORF1ab/nsp31868R1868PcGTcCA5240All0.000001
ORF1ab/nsp31868R1868PcGTcCG4240All0.000001
ORF1ab/nsp31868R1868PcGTcCC1240All0
ORF1ab/nsp31868R1868RcgTcgC164181AY.40.000255
ORF1ab/nsp31868R1868RcgTcgG17181AY.40.000026
ORF1ab/nsp31868R1868RcgTcgC179179B.1.2340.023618
ORF1ab/nsp31868R1868RcgTcgC147147C.2.10.98
ORF1ab/nsp31868R1868delCGT---130130All0.000025
ORF1ab/nsp31868R1868HcGtcAt102102B.1.1.70.000091
ORF1ab/nsp31868R1868RcgTcgC9797B.1.617.20.000365
ORF1ab/nsp31868R1868PcGtcCt8284B.1.1.70.000073
ORF1ab/nsp31868R1868PcGTcCG284B.1.1.70.000002
ORF1ab/nsp31868R1868HcGtcAt6868B.1.617.20.000256
ORF1ab/nsp31868R1868PcGtcCt6363AZ.20.051724
ORF1ab/nsp31868R1868delCGT---5959B.1.1.70.000053
ORF1ab/nsp31868R1868HcGtcAt4545AY.250.000271
ORF1ab/nsp31868R1868RcgTcgC4545C.20.725806
ORF1ab/nsp31868R1868PcGtcCt3838AY.40.000059
ORF1ab/nsp31868R1868RcgTcgC1636B.10.000147
ORF1ab/nsp31868R1868RcgTcgA936B.10.000082
ORF1ab/nsp31868R1868RCgTAgA636B.10.000055
ORF1ab/nsp31868R1868RcgTcgG436B.10.000037
ORF1ab/nsp31868R1868RCgTAgG136B.10.000009
ORF1ab/nsp31868R1868LcGtcTt2430All0.000005
ORF1ab/nsp31868R1868LCGTTTA230All0
ORF1ab/nsp31868R1868LcGTcTA230All0
ORF1ab/nsp31868R1868LCGTTTG130All0
ORF1ab/nsp31868R1868LcGTcTG130All0
ORF1ab/nsp31868R1868RcgTcgC2626AY.260.000736
ORF1ab/nsp31868R1868RcgTcgC2426AY.430.000106
ORF1ab/nsp31868R1868RcgTcgG226AY.430.000009
ORF1ab/nsp31868R1868RcgTcgC2525AY.1020.000663
ORF1ab/nsp31868R1868SCgtAgt1721All0.000003
ORF1ab/nsp31868R1868SCgTAgC221All0
ORF1ab/nsp31868R1868SCGTTCA121All0
ORF1ab/nsp31868R1868SCGtTCt121All0
ORF1ab/nsp31868R1868RcgTcgC1921B.1.20.000167
ORF1ab/nsp31868R1868RcgTcgA121B.1.20.000009
ORF1ab/nsp31868R1868RcgTcgG121B.1.20.000009
ORF1ab/nsp31868R1868CCgtTgt1717All0.000003
ORF1ab/nsp31868R1868HcGtcAt1616AY.1030.000099
ORF1ab/nsp31868R1868HcGtcAt1515Q.30.002175
ORF1ab/nsp31868R1868HcGtcAt1414AY.430.000062
ORF1ab/nsp31868R1868PcGtcCt714B.10.000064
ORF1ab/nsp31868R1868PcGTcCA514B.10.000046
ORF1ab/nsp31868R1868PcGTcCC114B.10.000009
ORF1ab/nsp31868R1868PcGTcCG114B.10.000009
ORF1ab/nsp31868R1868PcGtcCt1414B.1.617.20.000053
ORF1ab/nsp31868R1868RcgTcgA814P.10.000126
ORF1ab/nsp31868R1868RcgTcgC614P.10.000095
ORF1ab/nsp31868R1868HcGtcAt1313AY.330.000868
ORF1ab/nsp31868R1868HcGtcAt1112B.10.000101
ORF1ab/nsp31868R1868SCgtAgt912B.10.000082
ORF1ab/nsp31868R1868SCGtTCt112B.10.000009
ORF1ab/nsp31868R1868HcGTcAC112B.10.000009
ORF1ab/nsp31868R1868SCGTTCA112B.10.000009
ORF1ab/nsp31868R1868SCgTAgC112B.10.000009
ORF1ab/nsp31868R1868RcgTcgG1011AY.340.00097
ORF1ab/nsp31868R1868RcgTcgC111AY.340.000097
ORF1ab/nsp31868R1868LcGtcTt511B.10.000046
ORF1ab/nsp31868R1868LcGTcTA211B.10.000018
ORF1ab/nsp31868R1868LCGTTTA211B.10.000018
ORF1ab/nsp31868R1868LCGTTTG111B.10.000009
ORF1ab/nsp31868R1868LcGTcTG111B.10.000009
ORF1ab/nsp31868R1868RcgTcgC910AY.1030.000056
ORF1ab/nsp31868R1868RcgTcgA110AY.1030.000006
ORF1ab/nsp31868R1868NCGtAAt79All0.000001
ORF1ab/nsp31868R1868TCGtACt49All0.000001
ORF1ab/nsp31868R1868TCGTACA49All0.000001
ORF1ab/nsp31868R1868NCGTAAC29All0
ORF1ab/nsp31868R1868TCGTACC19All0
ORF1ab/nsp31868R1868HcGtcAt99AY.1170.000761
ORF1ab/nsp31868R1868RcgTcgC99AY.1200.000335
ORF1ab/nsp31868R1868RcgTcgC99AY.390.000222
ORF1ab/nsp31868R1868RcgTcgC99AY.39.10.000357
ORF1ab/nsp31868R1868TCGtACt49B.10.000037
ORF1ab/nsp31868R1868TCGTACA49B.10.000037
ORF1ab/nsp31868R1868TCGTACC19B.10.000009
ORF1ab/nsp31868R1868HcGtcAt99B.1.1770.000119
ORF1ab/nsp31868R1868RcgTcgC88AY.440.000049
ORF1ab/nsp31868R1868HcGtcAt78B.1.10.000127
ORF1ab/nsp31868R1868HcGTcAC18B.1.10.000018
ORF1ab/nsp31868R1868RcgTcgC88B.1.1.10.002614
ORF1ab/nsp31868R1868QcGTcAA47All0.000001
ORF1ab/nsp31868R1868QcGTcAG37All0.000001
ORF1ab/nsp31868R1868HcGtcAt77AY.1180.000439
ORF1ab/nsp31868R1868QcGTcAA47B.10.000037
ORF1ab/nsp31868R1868QcGTcAG37B.10.000027
ORF1ab/nsp31868R1868RcgTcgC66AY.200.000233
ORF1ab/nsp31868R1868delCGT---66AY.40.000009
ORF1ab/nsp31868R1868delCGT---66AY.4.50.000645
ORF1ab/nsp31868R1868RcgTcgC66AY.90.000406
ORF1ab/nsp31868R1868delCGT---66B.1.1770.000079
ORF1ab/nsp31868R1868HcGtcAt66B.1.4290.000141
ORF1ab/nsp31868R1868GCgtGgt35All0.000001
ORF1ab/nsp31868R1868XCgTTgA25All0
ORF1ab/nsp31868R1868XCGTTAG25All0
ORF1ab/nsp31868R1868XCGTTAA15All0
ORF1ab/nsp31868R1868GCgTGgA15All0
ORF1ab/nsp31868R1868GCgTGgG15All0
ORF1ab/nsp31868R1868HcGtcAt55AY.39.10.000198
ORF1ab/nsp31868R1868delCGT---55AY.430.000022
ORF1ab/nsp31868R1868CCgtTgt55B.10.000046
ORF1ab/nsp31868R1868NCGtAAt45B.10.000037
ORF1ab/nsp31868R1868NCGTAAC15B.10.000009
ORF1ab/nsp31868R1868RcgTcgC55B.1.4700.007022
ORF1ab/nsp31868R1868KCGTAAA34All0.000001
ORF1ab/nsp31868R1868KCGTAAG14All0
ORF1ab/nsp31868R1868HcGtcAt44AY.1060.00134
ORF1ab/nsp31868R1868HcGtcAt44AY.1200.000149
ORF1ab/nsp31868R1868RcgTcgC24AY.250.000012
ORF1ab/nsp31868R1868RcgTcgG24AY.250.000012
ORF1ab/nsp31868R1868HcGtcAt44AY.440.000024
ORF1ab/nsp31868R1868RcgTcgC44AY.50.000083
ORF1ab/nsp31868R1868RcgTcgC44AY.750.000224
ORF1ab/nsp31868R1868delCGT---44B.10.000037
ORF1ab/nsp31868R1868KCGTAAA34B.10.000027
ORF1ab/nsp31868R1868XCgTTgA24B.10.000018
ORF1ab/nsp31868R1868KCGTAAG14B.10.000009
ORF1ab/nsp31868R1868XCGTTAA14B.10.000009
ORF1ab/nsp31868R1868XCGTTAG14B.10.000009
ORF1ab/nsp31868R1868HcGtcAt44B.1.1.2140.000222
ORF1ab/nsp31868R1868RcgTcgA34B.1.4270.000151
ORF1ab/nsp31868R1868HcGtcAt34B.1.4270.000151
ORF1ab/nsp31868R1868RcgTcgC14B.1.4270.00005
ORF1ab/nsp31868R1868HcGTcAC14B.1.4270.00005
ORF1ab/nsp31868R1868RcgTcgC44B.1.4290.000094
ORF1ab/nsp31868R1868PcGtcCt44C.36.30.002269
ORF1ab/nsp31868R1868PcGtcCt44Q.40.001819
ORF1ab/nsp31868R1868FCGtTTt23All0
ORF1ab/nsp31868R1868FCGTTTC13All0
ORF1ab/nsp31868R1868del1Cgt-gt13All0
ORF1ab/nsp31868R1868VCGtGTt13All0
ORF1ab/nsp31868R1868VCGTGTG13All0
ORF1ab/nsp31868R1868VCGTGTA13All0
ORF1ab/nsp31868R1868del1cgTcg-13All0
ORF1ab/nsp31868R1868del1cGtc-t13All0
ORF1ab/nsp31868R1868HcGtcAt33AY.290.000047
ORF1ab/nsp31868R1868HcGtcAt33AY.390.000074
ORF1ab/nsp31868R1868RcgTcgC33AY.450.000365
ORF1ab/nsp31868R1868HcGtcAt33AY.450.000365
ORF1ab/nsp31868R1868HcGtcAt33AY.50.000062
ORF1ab/nsp31868R1868VCGTGTG13B.10.000009
ORF1ab/nsp31868R1868VCGTGTA13B.10.000009
ORF1ab/nsp31868R1868VCGtGTt13B.10.000009
ORF1ab/nsp31868R1868GCgtGgt13B.10.000009
ORF1ab/nsp31868R1868GCgTGgG13B.10.000009
ORF1ab/nsp31868R1868GCgTGgA13B.10.000009
ORF1ab/nsp31868R1868delCGT---33B.1.10.000054
ORF1ab/nsp31868R1868RcgTcgC23B.1.10.000036
ORF1ab/nsp31868R1868RcgTcgG13B.1.10.000018
ORF1ab/nsp31868R1868LcGtcTt33B.1.1.70.000003
ORF1ab/nsp31868R1868HcGtcAt33B.1.177.600.000655
ORF1ab/nsp31868R1868HcGtcAt33B.1.20.000026
ORF1ab/nsp31868R1868RcgTcgC33B.1.5960.000261
ORF1ab/nsp31868R1868HcGtcAt33B.1.6370.000219
ORF1ab/nsp31868R1868RcgTcgC33C.370.000348
ORF1ab/nsp31868R1868LcGtcTt33D.20.000225
ORF1ab/nsp31868R1868PcGtcCt33P.10.000047
ORF1ab/nsp31868R1868del2cGTc--22All0
ORF1ab/nsp31868R1868ECGTGAA12All0
ORF1ab/nsp31868R1868ECGTGAG12All0
ORF1ab/nsp31868R1868RcgTcgC22AY.10.000791
ORF1ab/nsp31868R1868HcGtcAt22AY.1020.000053
ORF1ab/nsp31868R1868HcGtcAt22AY.1040.003968
ORF1ab/nsp31868R1868RcgTcgG12AY.1110.000183
ORF1ab/nsp31868R1868RcgTcgA12AY.1110.000183
ORF1ab/nsp31868R1868RcgTcgC22AY.1190.000071
ORF1ab/nsp31868R1868HcGtcAt22AY.200.000078
ORF1ab/nsp31868R1868delCGT---22AY.250.000012
ORF1ab/nsp31868R1868HcGtcAt22AY.30.00002
ORF1ab/nsp31868R1868delCGT---22AY.50.000041
ORF1ab/nsp31868R1868HcGtcAt22AY.5.30.000675
ORF1ab/nsp31868R1868HcGtcAt22AY.70.000392
ORF1ab/nsp31868R1868HcGtcAt22AY.980.000158
ORF1ab/nsp31868R1868PcGtcCt22AY.980.000158
ORF1ab/nsp31868R1868HcGtcAt22AY.98.10.000097
ORF1ab/nsp31868R1868RcgTcgC22AY.99.20.000184
ORF1ab/nsp31868R1868RcgTcgC22B0.000256
ORF1ab/nsp31868R1868HcGtcAt22B0.000256
ORF1ab/nsp31868R1868FCGtTTt22B.10.000018
ORF1ab/nsp31868R1868ECGTGAG12B.10.000009
ORF1ab/nsp31868R1868ECGTGAA12B.10.000009
ORF1ab/nsp31868R1868LcGtcTt22B.1.10.000036
ORF1ab/nsp31868R1868delCGT---22B.1.1.3110.000716
ORF1ab/nsp31868R1868PcGtcCt22B.1.1.5230.003125
ORF1ab/nsp31868R1868CCgtTgt22B.1.1.70.000002
ORF1ab/nsp31868R1868RcgTcgC22B.1.1770.000026
ORF1ab/nsp31868R1868delCGT---22B.1.177.170.001642
ORF1ab/nsp31868R1868delCGT---22B.1.177.870.001456
ORF1ab/nsp31868R1868CCgtTgt22B.1.20.000018
ORF1ab/nsp31868R1868RcgTcgC22B.1.2060.001631
ORF1ab/nsp31868R1868PcGTcCG12B.1.2220.001692
ORF1ab/nsp31868R1868PcGtcCt12B.1.2220.001692
ORF1ab/nsp31868R1868HcGtcAt22B.1.2430.000139
ORF1ab/nsp31868R1868HcGtcAt22B.1.3510.000059
ORF1ab/nsp31868R1868RcgTcgG12B.1.3980.002976
ORF1ab/nsp31868R1868RcgTcgA12B.1.3980.002976
ORF1ab/nsp31868R1868SCgTAgC12B.1.4270.00005
ORF1ab/nsp31868R1868NCGtAAt12B.1.4270.00005
ORF1ab/nsp31868R1868SCgtAgt12B.1.4270.00005
ORF1ab/nsp31868R1868NCGTAAC12B.1.4270.00005
ORF1ab/nsp31868R1868LcGtcTt22B.1.4290.000047
ORF1ab/nsp31868R1868HcGtcAt22B.1.5820.000981
ORF1ab/nsp31868R1868LcGtcTt22B.1.617.20.000008
ORF1ab/nsp31868R1868HcGtcAt22B.1.6210.000177
ORF1ab/nsp31868R1868HcGtcAt22D.20.00015
ORF1ab/nsp31868R1868HcGtcAt22P.10.000032
ORF1ab/nsp31868R1868RcgTcgC22P.1.70.000639
ORF1ab/nsp31868R1868HcGtcAt22R.10.00018
ORF1ab/nsp31868R1868RcgTcgC11A.23.10.000704
ORF1ab/nsp31868R1868RcgTcgC11A.280.002646
ORF1ab/nsp31868R1868delCGT---11AD.20.000219
ORF1ab/nsp31868R1868delCGT---11AH.30.003802
ORF1ab/nsp31868R1868ICGtATt11All0
ORF1ab/nsp31868R1868DCGtGAt11All0
ORF1ab/nsp31868R1868YCGtTAt11All0
ORF1ab/nsp31868R1868WCgTTgG11All0
ORF1ab/nsp31868R1868HcGtcAt11AY.1000.000046
ORF1ab/nsp31868R1868RcgTcgC11AY.1000.000046
ORF1ab/nsp31868R1868RcgTcgC11AY.1010.00049
ORF1ab/nsp31868R1868delCGT---11AY.1010.00049
ORF1ab/nsp31868R1868RcgTcgC11AY.1080.001103
ORF1ab/nsp31868R1868PcGtcCt11AY.1100.000113
ORF1ab/nsp31868R1868HcGtcAt11AY.1130.000142
ORF1ab/nsp31868R1868HcGtcAt11AY.1190.000035
ORF1ab/nsp31868R1868delCGT---11AY.1200.000037
ORF1ab/nsp31868R1868HcGtcAt11AY.120.10.000321
ORF1ab/nsp31868R1868RcgTcgA11AY.130.000161
ORF1ab/nsp31868R1868delCGT---11AY.190.00114
ORF1ab/nsp31868R1868delCGT---11AY.200.000039
ORF1ab/nsp31868R1868HcGtcAt11AY.230.00007
ORF1ab/nsp31868R1868CCgtTgt11AY.230.00007
ORF1ab/nsp31868R1868LcGtcTt11AY.250.000006
ORF1ab/nsp31868R1868HcGtcAt11AY.270.000065
ORF1ab/nsp31868R1868RcgTcgC11AY.290.000016
ORF1ab/nsp31868R1868RcgTcgC11AY.30.00001
ORF1ab/nsp31868R1868RcgTcgC11AY.3.10.000085
ORF1ab/nsp31868R1868delCGT---11AY.330.000067
ORF1ab/nsp31868R1868RcgTcgC11AY.34.10.00051
ORF1ab/nsp31868R1868RcgTcgG11AY.360.000148
ORF1ab/nsp31868R1868del2cGTc--11AY.40.000002
ORF1ab/nsp31868R1868SCgtAgt11AY.40.000002
ORF1ab/nsp31868R1868GCgtGgt11AY.40.000002
ORF1ab/nsp31868R1868HcGtcAt11AY.4.20.000022
ORF1ab/nsp31868R1868RcgTcgC11AY.4.20.000022
ORF1ab/nsp31868R1868RcgTcgC11AY.4.50.000107
ORF1ab/nsp31868R1868RcgTcgC11AY.410.000294
ORF1ab/nsp31868R1868RcgTcgG11AY.420.00004
ORF1ab/nsp31868R1868LcGtcTt11AY.440.000006
ORF1ab/nsp31868R1868CCgtTgt11AY.440.000006
ORF1ab/nsp31868R1868HcGtcAt11AY.460.000104
ORF1ab/nsp31868R1868RcgTcgC11AY.460.000104
ORF1ab/nsp31868R1868HcGtcAt11AY.46.50.000198
ORF1ab/nsp31868R1868RcgTcgC11AY.46.60.000072
ORF1ab/nsp31868R1868HcGtcAt11AY.470.000031
ORF1ab/nsp31868R1868RcgTcgC11AY.470.000031
ORF1ab/nsp31868R1868HcGtcAt11AY.560.001605
ORF1ab/nsp31868R1868HcGtcAt11AY.60.000041
ORF1ab/nsp31868R1868CCgtTgt11AY.60.000041
ORF1ab/nsp31868R1868delCGT---11AY.600.000938
ORF1ab/nsp31868R1868HcGtcAt11AY.600.000938
ORF1ab/nsp31868R1868PcGtcCt11AY.610.000105
ORF1ab/nsp31868R1868RcgTcgC11AY.610.000105
ORF1ab/nsp31868R1868RcgTcgC11AY.620.000436
ORF1ab/nsp31868R1868RcgTcgC11AY.680.000274
ORF1ab/nsp31868R1868PcGtcCt11AY.75.10.00018
ORF1ab/nsp31868R1868HcGtcAt11AY.790.001211
ORF1ab/nsp31868R1868RcgTcgA11AY.790.001211
ORF1ab/nsp31868R1868delCGT---11AY.810.001992
ORF1ab/nsp31868R1868delCGT---11AY.90.000068
ORF1ab/nsp31868R1868HcGtcAt11AY.9.10.000084
ORF1ab/nsp31868R1868HcGtcAt11AY.9.20.000037
ORF1ab/nsp31868R1868HcGtcAt11AY.99.20.000092
ORF1ab/nsp31868R1868SCgtAgt11B0.000128
ORF1ab/nsp31868R1868PcGtcCt11B0.000128
ORF1ab/nsp31868R1868DCGtGAt11B.10.000009
ORF1ab/nsp31868R1868YCGtTAt11B.10.000009
ORF1ab/nsp31868R1868WCgTTgG11B.10.000009
ORF1ab/nsp31868R1868PcGtcCt11B.1.10.000018
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.10.000327
ORF1ab/nsp31868R1868delCGT---11B.1.1.1590.004673
ORF1ab/nsp31868R1868LcGtcTt11B.1.1.2100.005714
ORF1ab/nsp31868R1868LcGtcTt11B.1.1.2180.007692
ORF1ab/nsp31868R1868delCGT---11B.1.1.2360.006897
ORF1ab/nsp31868R1868RcgTcgC11B.1.1.280.000311
ORF1ab/nsp31868R1868delCGT---11B.1.1.3060.000438
ORF1ab/nsp31868R1868PcGtcCt11B.1.1.3180.000302
ORF1ab/nsp31868R1868delCGT---11B.1.1.3720.000689
ORF1ab/nsp31868R1868RcgTcgC11B.1.1.5190.00004
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.5210.005348
ORF1ab/nsp31868R1868SCgtAgt11B.1.1.70.000001
ORF1ab/nsp31868R1868del2cGTc--11B.1.1.70.000001
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.700.000341
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.80.003584
ORF1ab/nsp31868R1868HcGtcAt11B.1.1110.001175
ORF1ab/nsp31868R1868RcgTcgC11B.1.160.150.00495
ORF1ab/nsp31868R1868del1cgTcg-11B.1.1770.000013
ORF1ab/nsp31868R1868delCGT---11B.1.177.100.000878
ORF1ab/nsp31868R1868delCGT---11B.1.177.150.000631
ORF1ab/nsp31868R1868delCGT---11B.1.177.160.000664
ORF1ab/nsp31868R1868delCGT---11B.1.177.180.00116
ORF1ab/nsp31868R1868delCGT---11B.1.177.210.000076
ORF1ab/nsp31868R1868delCGT---11B.1.177.510.004566
ORF1ab/nsp31868R1868RcgTcgA11B.1.177.60.000977
ORF1ab/nsp31868R1868delCGT---11B.1.177.630.002703
ORF1ab/nsp31868R1868LcGtcTt11B.1.177.70.000165
ORF1ab/nsp31868R1868delCGT---11B.1.177.70.000165
ORF1ab/nsp31868R1868delCGT---11B.1.177.730.000566
ORF1ab/nsp31868R1868RcgTcgC11B.1.177.750.001041
ORF1ab/nsp31868R1868delCGT---11B.1.177.90.001332
ORF1ab/nsp31868R1868SCgtAgt11B.1.20.000009
ORF1ab/nsp31868R1868NCGtAAt11B.1.20.000009
ORF1ab/nsp31868R1868LcGtcTt11B.1.2210.000071
ORF1ab/nsp31868R1868RcgTcgG11B.1.2220.001692
ORF1ab/nsp31868R1868HcGtcAt11B.1.2220.001692
ORF1ab/nsp31868R1868CCgtTgt11B.1.2340.000132
ORF1ab/nsp31868R1868CCgtTgt11B.1.2430.00007
ORF1ab/nsp31868R1868RcgTcgC11B.1.2430.00007
ORF1ab/nsp31868R1868PcGtcCt11B.1.2580.000067
ORF1ab/nsp31868R1868HcGtcAt11B.1.2580.000067
ORF1ab/nsp31868R1868CCgtTgt11B.1.258.30.001675
ORF1ab/nsp31868R1868HcGtcAt11B.1.3110.000275
ORF1ab/nsp31868R1868PcGtcCt11B.1.3510.00003
ORF1ab/nsp31868R1868RcgTcgC11B.1.360.000146
ORF1ab/nsp31868R1868delCGT---11B.1.36.380.001642
ORF1ab/nsp31868R1868RcgTcgC11B.1.3970.004854
ORF1ab/nsp31868R1868PcGtcCt11B.1.3980.002976
ORF1ab/nsp31868R1868RcgTcgC11B.1.4240.008065
ORF1ab/nsp31868R1868RcgTcgC11B.1.4850.014925
ORF1ab/nsp31868R1868HcGtcAt11B.1.5030.002488
ORF1ab/nsp31868R1868HcGtcAt11B.1.5260.000024
ORF1ab/nsp31868R1868HcGtcAt11B.1.5290.055556
ORF1ab/nsp31868R1868SCgtAgt11B.1.5460.003704
ORF1ab/nsp31868R1868LcGtcTt11B.1.5510.00129
ORF1ab/nsp31868R1868ICGtATt11B.1.5770.000687
ORF1ab/nsp31868R1868RcgTcgC11B.1.5950.000261
ORF1ab/nsp31868R1868CCgtTgt11B.1.5950.000261
ORF1ab/nsp31868R1868RcgTcgC11B.1.617.10.000129
ORF1ab/nsp31868R1868SCgtAgt11B.1.617.20.000004
ORF1ab/nsp31868R1868XCGTTAG11B.1.617.20.000004
ORF1ab/nsp31868R1868delCGT---11B.1.617.20.000004
ORF1ab/nsp31868R1868del1Cgt-gt11B.1.617.20.000004
ORF1ab/nsp31868R1868FCGTTTC11B.1.617.20.000004
ORF1ab/nsp31868R1868HcGtcAt11B.1.6190.000871
ORF1ab/nsp31868R1868RcgTcgC11B.1.6230.000536
ORF1ab/nsp31868R1868HcGtcAt11B.1.6320.006711
ORF1ab/nsp31868R1868RcgTcgC11B.1.6370.000073
ORF1ab/nsp31868R1868delCGT---11B.340.013699
ORF1ab/nsp31868R1868del1cGtc-t11B.4.40.018868
ORF1ab/nsp31868R1868delCGT---11C.170.055556
ORF1ab/nsp31868R1868RcgTcgG11C.230.005814
ORF1ab/nsp31868R1868HcGtcAt11C.350.000774
ORF1ab/nsp31868R1868delCGT---11C.370.000116
ORF1ab/nsp31868R1868HcGtcAt11C.370.000116
ORF1ab/nsp31868R1868GCgtGgt11D.20.000075
ORF1ab/nsp31868R1868CCgtTgt11D.20.000075
ORF1ab/nsp31868R1868delCGT---11P.10.000016
ORF1ab/nsp31868R1868SCgtAgt11P.10.000016
ORF1ab/nsp31868R1868NCGtAAt11P.10.000016
ORF1ab/nsp31868R1868RcgTcgA11P.1.140.000048
ORF1ab/nsp31868R1868HcGtcAt11P.1.140.000048
ORF1ab/nsp31868R1868PcGtcCt11P.1.160.000374
ORF1ab/nsp31868R1868HcGtcAt11Q.10.000126
ORF1ab/nsp31868R1868delCGT---11Q.10.000126
ORF1ab/nsp31868R1868HcGtcAt11Q.80.000165