CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1868

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31868R1868RR2686RsyncgTcgC179117020.9503078321-8323
ORF1ab/nsp31868R1868RR2686RsyncgTcgG1791510.02847578321-8323
ORF1ab/nsp31868R1868RR2686RsyncgTcgA1791310.01730888321-8323
ORF1ab/nsp31868R1868RR2686RsynCgTAgA179160.003350088321-8323
ORF1ab/nsp31868R1868RR2686RsynCgTAgG179110.0005583478321-8323
ORF1ab/nsp31868R1868HR2686HnonsyncGtcAt7757720.9961298321-8323
ORF1ab/nsp31868R1868HR2686HnonsyncGTcAC77530.003870978321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGtcCt2402300.9583338321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGTcCA24050.02083338321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGTcCG24040.01666678321-8323
ORF1ab/nsp31868R1868PR2686PnonsyncGTcCC24010.004166678321-8323
ORF1ab/nsp31868R1868delR2686deldelCGT---13013018321-8323
ORF1ab/nsp31868R1868LR2686LnonsyncGtcTt30240.88321-8323
ORF1ab/nsp31868R1868LR2686LnonsyncGTcTA3020.06666678321-8323
ORF1ab/nsp31868R1868LR2686LnonsynCGTTTA3020.06666678321-8323
ORF1ab/nsp31868R1868LR2686LnonsyncGTcTG3010.03333338321-8323
ORF1ab/nsp31868R1868LR2686LnonsynCGTTTG3010.03333338321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCgtAgt21170.8095248321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCgTAgC2120.09523818321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCGtTCt2110.0476198321-8323
ORF1ab/nsp31868R1868SR2686SnonsynCGTTCA2110.0476198321-8323
ORF1ab/nsp31868R1868CR2686CnonsynCgtTgt171718321-8323
ORF1ab/nsp31868R1868NR2686NnonsynCGtAAt970.7777788321-8323
ORF1ab/nsp31868R1868TR2686TnonsynCGtACt940.4444448321-8323
ORF1ab/nsp31868R1868TR2686TnonsynCGTACA940.4444448321-8323
ORF1ab/nsp31868R1868NR2686NnonsynCGTAAC920.2222228321-8323
ORF1ab/nsp31868R1868TR2686TnonsynCGTACC910.1111118321-8323
ORF1ab/nsp31868R1868QR2686QnonsyncGTcAA740.5714298321-8323
ORF1ab/nsp31868R1868QR2686QnonsyncGTcAG730.4285718321-8323
ORF1ab/nsp31868R1868GR2686GnonsynCgtGgt530.68321-8323
ORF1ab/nsp31868R1868XR2686XnonsynCGTTAG520.48321-8323
ORF1ab/nsp31868R1868XR2686XnonsynCgTTgA520.48321-8323
ORF1ab/nsp31868R1868GR2686GnonsynCgTGgA510.28321-8323
ORF1ab/nsp31868R1868GR2686GnonsynCgTGgG510.28321-8323
ORF1ab/nsp31868R1868XR2686XnonsynCGTTAA510.28321-8323
ORF1ab/nsp31868R1868KR2686KnonsynCGTAAA430.758321-8323
ORF1ab/nsp31868R1868KR2686KnonsynCGTAAG410.258321-8323
ORF1ab/nsp31868R1868FR2686FnonsynCGtTTt320.6666678321-8323
ORF1ab/nsp31868R1868del1R2686del1delCgt-gt310.3333338321-8323
ORF1ab/nsp31868R1868FR2686FnonsynCGTTTC310.3333338321-8323
ORF1ab/nsp31868R1868del1R2686del1delcgTcg-310.3333338321-8323
ORF1ab/nsp31868R1868del1R2686del1delcGtc-t310.3333338321-8323
ORF1ab/nsp31868R1868VR2686VnonsynCGTGTA310.3333338321-8323
ORF1ab/nsp31868R1868VR2686VnonsynCGtGTt310.3333338321-8323
ORF1ab/nsp31868R1868VR2686VnonsynCGTGTG310.3333338321-8323
ORF1ab/nsp31868R1868del2R2686del2delcGTc--2218321-8323
ORF1ab/nsp31868R1868ER2686EnonsynCGTGAA210.58321-8323
ORF1ab/nsp31868R1868ER2686EnonsynCGTGAG210.58321-8323
ORF1ab/nsp31868R1868WR2686WnonsynCgTTgG1118321-8323
ORF1ab/nsp31868R1868YR2686YnonsynCGtTAt1118321-8323
ORF1ab/nsp31868R1868DR2686DnonsynCGtGAt1118321-8323
ORF1ab/nsp31868R1868IR2686InonsynCGtATt1118321-8323

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31868R1868RcgTcgC17021791All0.000326
ORF1ab/nsp31868R1868RcgTcgG511791All0.00001
ORF1ab/nsp31868R1868RcgTcgA311791All0.000006
ORF1ab/nsp31868R1868RCgTAgA61791All0.000001
ORF1ab/nsp31868R1868RCgTAgG11791All0
ORF1ab/nsp31868R1868HcGtcAt772775All0.000148
ORF1ab/nsp31868R1868HcGTcAC3775All0.000001
ORF1ab/nsp31868R1868RcgTcgC488488B.1.5250.055222
ORF1ab/nsp31868R1868HcGtcAt338338AY.40.000526
ORF1ab/nsp31868R1868RcgTcgC325336B.1.1.70.000291
ORF1ab/nsp31868R1868RcgTcgG8336B.1.1.70.000007
ORF1ab/nsp31868R1868RcgTcgA3336B.1.1.70.000003
ORF1ab/nsp31868R1868PcGtcCt230240All0.000044
ORF1ab/nsp31868R1868PcGTcCA5240All0.000001
ORF1ab/nsp31868R1868PcGTcCG4240All0.000001
ORF1ab/nsp31868R1868PcGTcCC1240All0
ORF1ab/nsp31868R1868RcgTcgC164181AY.40.000255
ORF1ab/nsp31868R1868RcgTcgG17181AY.40.000026
ORF1ab/nsp31868R1868RcgTcgC179179B.1.2340.023618
ORF1ab/nsp31868R1868RcgTcgC147147C.2.10.98
ORF1ab/nsp31868R1868delCGT---130130All0.000025
ORF1ab/nsp31868R1868HcGtcAt102102B.1.1.70.000091
ORF1ab/nsp31868R1868RcgTcgC9797B.1.617.20.000365
ORF1ab/nsp31868R1868PcGtcCt8284B.1.1.70.000073
ORF1ab/nsp31868R1868PcGTcCG284B.1.1.70.000002
ORF1ab/nsp31868R1868HcGtcAt6868B.1.617.20.000256
ORF1ab/nsp31868R1868PcGtcCt6363AZ.20.051724
ORF1ab/nsp31868R1868delCGT---5959B.1.1.70.000053
ORF1ab/nsp31868R1868HcGtcAt4545AY.250.000271
ORF1ab/nsp31868R1868RcgTcgC4545C.20.725806
ORF1ab/nsp31868R1868PcGtcCt3838AY.40.000059
ORF1ab/nsp31868R1868RcgTcgC1636B.10.000147
ORF1ab/nsp31868R1868RcgTcgA936B.10.000082
ORF1ab/nsp31868R1868RCgTAgA636B.10.000055
ORF1ab/nsp31868R1868RcgTcgG436B.10.000037
ORF1ab/nsp31868R1868RCgTAgG136B.10.000009
ORF1ab/nsp31868R1868LcGtcTt2430All0.000005
ORF1ab/nsp31868R1868LCGTTTA230All0
ORF1ab/nsp31868R1868LcGTcTA230All0
ORF1ab/nsp31868R1868LCGTTTG130All0
ORF1ab/nsp31868R1868LcGTcTG130All0
ORF1ab/nsp31868R1868RcgTcgC2626AY.260.000736
ORF1ab/nsp31868R1868RcgTcgC2426AY.430.000106
ORF1ab/nsp31868R1868RcgTcgG226AY.430.000009
ORF1ab/nsp31868R1868RcgTcgC2525AY.1020.000663
ORF1ab/nsp31868R1868SCgtAgt1721All0.000003
ORF1ab/nsp31868R1868SCgTAgC221All0
ORF1ab/nsp31868R1868SCGTTCA121All0
ORF1ab/nsp31868R1868SCGtTCt121All0
ORF1ab/nsp31868R1868RcgTcgC1921B.1.20.000167
ORF1ab/nsp31868R1868RcgTcgA121B.1.20.000009
ORF1ab/nsp31868R1868RcgTcgG121B.1.20.000009
ORF1ab/nsp31868R1868CCgtTgt1717All0.000003
ORF1ab/nsp31868R1868HcGtcAt1616AY.1030.000099
ORF1ab/nsp31868R1868HcGtcAt1515Q.30.002175
ORF1ab/nsp31868R1868HcGtcAt1414AY.430.000062
ORF1ab/nsp31868R1868PcGtcCt714B.10.000064
ORF1ab/nsp31868R1868PcGTcCA514B.10.000046
ORF1ab/nsp31868R1868PcGTcCC114B.10.000009
ORF1ab/nsp31868R1868PcGTcCG114B.10.000009
ORF1ab/nsp31868R1868PcGtcCt1414B.1.617.20.000053
ORF1ab/nsp31868R1868RcgTcgA814P.10.000126
ORF1ab/nsp31868R1868RcgTcgC614P.10.000095
ORF1ab/nsp31868R1868HcGtcAt1313AY.330.000868
ORF1ab/nsp31868R1868HcGtcAt1112B.10.000101
ORF1ab/nsp31868R1868SCgtAgt912B.10.000082
ORF1ab/nsp31868R1868SCGtTCt112B.10.000009
ORF1ab/nsp31868R1868HcGTcAC112B.10.000009
ORF1ab/nsp31868R1868SCGTTCA112B.10.000009
ORF1ab/nsp31868R1868SCgTAgC112B.10.000009
ORF1ab/nsp31868R1868RcgTcgG1011AY.340.00097
ORF1ab/nsp31868R1868RcgTcgC111AY.340.000097
ORF1ab/nsp31868R1868LcGtcTt511B.10.000046
ORF1ab/nsp31868R1868LcGTcTA211B.10.000018
ORF1ab/nsp31868R1868LCGTTTA211B.10.000018
ORF1ab/nsp31868R1868LCGTTTG111B.10.000009
ORF1ab/nsp31868R1868LcGTcTG111B.10.000009
ORF1ab/nsp31868R1868RcgTcgC910AY.1030.000056
ORF1ab/nsp31868R1868RcgTcgA110AY.1030.000006
ORF1ab/nsp31868R1868NCGtAAt79All0.000001
ORF1ab/nsp31868R1868TCGtACt49All0.000001
ORF1ab/nsp31868R1868TCGTACA49All0.000001
ORF1ab/nsp31868R1868NCGTAAC29All0
ORF1ab/nsp31868R1868TCGTACC19All0
ORF1ab/nsp31868R1868HcGtcAt99AY.1170.000761
ORF1ab/nsp31868R1868RcgTcgC99AY.1200.000335
ORF1ab/nsp31868R1868RcgTcgC99AY.390.000222
ORF1ab/nsp31868R1868RcgTcgC99AY.39.10.000357
ORF1ab/nsp31868R1868TCGtACt49B.10.000037
ORF1ab/nsp31868R1868TCGTACA49B.10.000037
ORF1ab/nsp31868R1868TCGTACC19B.10.000009
ORF1ab/nsp31868R1868HcGtcAt99B.1.1770.000119
ORF1ab/nsp31868R1868RcgTcgC88AY.440.000049
ORF1ab/nsp31868R1868HcGtcAt78B.1.10.000127
ORF1ab/nsp31868R1868HcGTcAC18B.1.10.000018
ORF1ab/nsp31868R1868RcgTcgC88B.1.1.10.002614
ORF1ab/nsp31868R1868QcGTcAA47All0.000001
ORF1ab/nsp31868R1868QcGTcAG37All0.000001
ORF1ab/nsp31868R1868HcGtcAt77AY.1180.000439
ORF1ab/nsp31868R1868QcGTcAA47B.10.000037
ORF1ab/nsp31868R1868QcGTcAG37B.10.000027
ORF1ab/nsp31868R1868RcgTcgC66AY.200.000233
ORF1ab/nsp31868R1868delCGT---66AY.40.000009
ORF1ab/nsp31868R1868delCGT---66AY.4.50.000645
ORF1ab/nsp31868R1868RcgTcgC66AY.90.000406
ORF1ab/nsp31868R1868delCGT---66B.1.1770.000079
ORF1ab/nsp31868R1868HcGtcAt66B.1.4290.000141
ORF1ab/nsp31868R1868GCgtGgt35All0.000001
ORF1ab/nsp31868R1868XCgTTgA25All0
ORF1ab/nsp31868R1868XCGTTAG25All0
ORF1ab/nsp31868R1868XCGTTAA15All0
ORF1ab/nsp31868R1868GCgTGgA15All0
ORF1ab/nsp31868R1868GCgTGgG15All0
ORF1ab/nsp31868R1868HcGtcAt55AY.39.10.000198
ORF1ab/nsp31868R1868delCGT---55AY.430.000022
ORF1ab/nsp31868R1868CCgtTgt55B.10.000046
ORF1ab/nsp31868R1868NCGtAAt45B.10.000037
ORF1ab/nsp31868R1868NCGTAAC15B.10.000009
ORF1ab/nsp31868R1868RcgTcgC55B.1.4700.007022
ORF1ab/nsp31868R1868KCGTAAA34All0.000001
ORF1ab/nsp31868R1868KCGTAAG14All0
ORF1ab/nsp31868R1868HcGtcAt44AY.1060.00134
ORF1ab/nsp31868R1868HcGtcAt44AY.1200.000149
ORF1ab/nsp31868R1868RcgTcgC24AY.250.000012
ORF1ab/nsp31868R1868RcgTcgG24AY.250.000012
ORF1ab/nsp31868R1868HcGtcAt44AY.440.000024
ORF1ab/nsp31868R1868RcgTcgC44AY.50.000083
ORF1ab/nsp31868R1868RcgTcgC44AY.750.000224
ORF1ab/nsp31868R1868delCGT---44B.10.000037
ORF1ab/nsp31868R1868KCGTAAA34B.10.000027
ORF1ab/nsp31868R1868XCgTTgA24B.10.000018
ORF1ab/nsp31868R1868KCGTAAG14B.10.000009
ORF1ab/nsp31868R1868XCGTTAA14B.10.000009
ORF1ab/nsp31868R1868XCGTTAG14B.10.000009
ORF1ab/nsp31868R1868HcGtcAt44B.1.1.2140.000222
ORF1ab/nsp31868R1868RcgTcgA34B.1.4270.000151
ORF1ab/nsp31868R1868HcGtcAt34B.1.4270.000151
ORF1ab/nsp31868R1868RcgTcgC14B.1.4270.00005
ORF1ab/nsp31868R1868HcGTcAC14B.1.4270.00005
ORF1ab/nsp31868R1868RcgTcgC44B.1.4290.000094
ORF1ab/nsp31868R1868PcGtcCt44C.36.30.002269
ORF1ab/nsp31868R1868PcGtcCt44Q.40.001819
ORF1ab/nsp31868R1868FCGtTTt23All0
ORF1ab/nsp31868R1868FCGTTTC13All0
ORF1ab/nsp31868R1868del1Cgt-gt13All0
ORF1ab/nsp31868R1868VCGtGTt13All0
ORF1ab/nsp31868R1868VCGTGTG13All0
ORF1ab/nsp31868R1868VCGTGTA13All0
ORF1ab/nsp31868R1868del1cgTcg-13All0
ORF1ab/nsp31868R1868del1cGtc-t13All0
ORF1ab/nsp31868R1868HcGtcAt33AY.290.000047
ORF1ab/nsp31868R1868HcGtcAt33AY.390.000074
ORF1ab/nsp31868R1868RcgTcgC33AY.450.000365
ORF1ab/nsp31868R1868HcGtcAt33AY.450.000365
ORF1ab/nsp31868R1868HcGtcAt33AY.50.000062
ORF1ab/nsp31868R1868VCGTGTG13B.10.000009
ORF1ab/nsp31868R1868VCGTGTA13B.10.000009
ORF1ab/nsp31868R1868VCGtGTt13B.10.000009
ORF1ab/nsp31868R1868GCgtGgt13B.10.000009
ORF1ab/nsp31868R1868GCgTGgG13B.10.000009
ORF1ab/nsp31868R1868GCgTGgA13B.10.000009
ORF1ab/nsp31868R1868delCGT---33B.1.10.000054
ORF1ab/nsp31868R1868RcgTcgC23B.1.10.000036
ORF1ab/nsp31868R1868RcgTcgG13B.1.10.000018
ORF1ab/nsp31868R1868LcGtcTt33B.1.1.70.000003
ORF1ab/nsp31868R1868HcGtcAt33B.1.177.600.000655
ORF1ab/nsp31868R1868HcGtcAt33B.1.20.000026
ORF1ab/nsp31868R1868RcgTcgC33B.1.5960.000261
ORF1ab/nsp31868R1868HcGtcAt33B.1.6370.000219
ORF1ab/nsp31868R1868RcgTcgC33C.370.000348
ORF1ab/nsp31868R1868LcGtcTt33D.20.000225
ORF1ab/nsp31868R1868PcGtcCt33P.10.000047
ORF1ab/nsp31868R1868del2cGTc--22All0
ORF1ab/nsp31868R1868ECGTGAA12All0
ORF1ab/nsp31868R1868ECGTGAG12All0
ORF1ab/nsp31868R1868RcgTcgC22AY.10.000791
ORF1ab/nsp31868R1868HcGtcAt22AY.1020.000053
ORF1ab/nsp31868R1868HcGtcAt22AY.1040.003968
ORF1ab/nsp31868R1868RcgTcgG12AY.1110.000183
ORF1ab/nsp31868R1868RcgTcgA12AY.1110.000183
ORF1ab/nsp31868R1868RcgTcgC22AY.1190.000071
ORF1ab/nsp31868R1868HcGtcAt22AY.200.000078
ORF1ab/nsp31868R1868delCGT---22AY.250.000012
ORF1ab/nsp31868R1868HcGtcAt22AY.30.00002
ORF1ab/nsp31868R1868delCGT---22AY.50.000041
ORF1ab/nsp31868R1868HcGtcAt22AY.5.30.000675
ORF1ab/nsp31868R1868HcGtcAt22AY.70.000392
ORF1ab/nsp31868R1868HcGtcAt22AY.980.000158
ORF1ab/nsp31868R1868PcGtcCt22AY.980.000158
ORF1ab/nsp31868R1868HcGtcAt22AY.98.10.000097
ORF1ab/nsp31868R1868RcgTcgC22AY.99.20.000184
ORF1ab/nsp31868R1868RcgTcgC22B0.000256
ORF1ab/nsp31868R1868HcGtcAt22B0.000256
ORF1ab/nsp31868R1868FCGtTTt22B.10.000018
ORF1ab/nsp31868R1868ECGTGAG12B.10.000009
ORF1ab/nsp31868R1868ECGTGAA12B.10.000009
ORF1ab/nsp31868R1868LcGtcTt22B.1.10.000036
ORF1ab/nsp31868R1868delCGT---22B.1.1.3110.000716
ORF1ab/nsp31868R1868PcGtcCt22B.1.1.5230.003125
ORF1ab/nsp31868R1868CCgtTgt22B.1.1.70.000002
ORF1ab/nsp31868R1868RcgTcgC22B.1.1770.000026
ORF1ab/nsp31868R1868delCGT---22B.1.177.170.001642
ORF1ab/nsp31868R1868delCGT---22B.1.177.870.001456
ORF1ab/nsp31868R1868CCgtTgt22B.1.20.000018
ORF1ab/nsp31868R1868RcgTcgC22B.1.2060.001631
ORF1ab/nsp31868R1868PcGTcCG12B.1.2220.001692
ORF1ab/nsp31868R1868PcGtcCt12B.1.2220.001692
ORF1ab/nsp31868R1868HcGtcAt22B.1.2430.000139
ORF1ab/nsp31868R1868HcGtcAt22B.1.3510.000059
ORF1ab/nsp31868R1868RcgTcgG12B.1.3980.002976
ORF1ab/nsp31868R1868RcgTcgA12B.1.3980.002976
ORF1ab/nsp31868R1868SCgTAgC12B.1.4270.00005
ORF1ab/nsp31868R1868NCGtAAt12B.1.4270.00005
ORF1ab/nsp31868R1868SCgtAgt12B.1.4270.00005
ORF1ab/nsp31868R1868NCGTAAC12B.1.4270.00005
ORF1ab/nsp31868R1868LcGtcTt22B.1.4290.000047
ORF1ab/nsp31868R1868HcGtcAt22B.1.5820.000981
ORF1ab/nsp31868R1868LcGtcTt22B.1.617.20.000008
ORF1ab/nsp31868R1868HcGtcAt22B.1.6210.000177
ORF1ab/nsp31868R1868HcGtcAt22D.20.00015
ORF1ab/nsp31868R1868HcGtcAt22P.10.000032
ORF1ab/nsp31868R1868RcgTcgC22P.1.70.000639
ORF1ab/nsp31868R1868HcGtcAt22R.10.00018
ORF1ab/nsp31868R1868RcgTcgC11A.23.10.000704
ORF1ab/nsp31868R1868RcgTcgC11A.280.002646
ORF1ab/nsp31868R1868delCGT---11AD.20.000219
ORF1ab/nsp31868R1868delCGT---11AH.30.003802
ORF1ab/nsp31868R1868ICGtATt11All0
ORF1ab/nsp31868R1868DCGtGAt11All0
ORF1ab/nsp31868R1868YCGtTAt11All0
ORF1ab/nsp31868R1868WCgTTgG11All0
ORF1ab/nsp31868R1868HcGtcAt11AY.1000.000046
ORF1ab/nsp31868R1868RcgTcgC11AY.1000.000046
ORF1ab/nsp31868R1868RcgTcgC11AY.1010.00049
ORF1ab/nsp31868R1868delCGT---11AY.1010.00049
ORF1ab/nsp31868R1868RcgTcgC11AY.1080.001103
ORF1ab/nsp31868R1868PcGtcCt11AY.1100.000113
ORF1ab/nsp31868R1868HcGtcAt11AY.1130.000142
ORF1ab/nsp31868R1868HcGtcAt11AY.1190.000035
ORF1ab/nsp31868R1868delCGT---11AY.1200.000037
ORF1ab/nsp31868R1868HcGtcAt11AY.120.10.000321
ORF1ab/nsp31868R1868RcgTcgA11AY.130.000161
ORF1ab/nsp31868R1868delCGT---11AY.190.00114
ORF1ab/nsp31868R1868delCGT---11AY.200.000039
ORF1ab/nsp31868R1868HcGtcAt11AY.230.00007
ORF1ab/nsp31868R1868CCgtTgt11AY.230.00007
ORF1ab/nsp31868R1868LcGtcTt11AY.250.000006
ORF1ab/nsp31868R1868HcGtcAt11AY.270.000065
ORF1ab/nsp31868R1868RcgTcgC11AY.290.000016
ORF1ab/nsp31868R1868RcgTcgC11AY.30.00001
ORF1ab/nsp31868R1868RcgTcgC11AY.3.10.000085
ORF1ab/nsp31868R1868delCGT---11AY.330.000067
ORF1ab/nsp31868R1868RcgTcgC11AY.34.10.00051
ORF1ab/nsp31868R1868RcgTcgG11AY.360.000148
ORF1ab/nsp31868R1868del2cGTc--11AY.40.000002
ORF1ab/nsp31868R1868SCgtAgt11AY.40.000002
ORF1ab/nsp31868R1868GCgtGgt11AY.40.000002
ORF1ab/nsp31868R1868HcGtcAt11AY.4.20.000022
ORF1ab/nsp31868R1868RcgTcgC11AY.4.20.000022
ORF1ab/nsp31868R1868RcgTcgC11AY.4.50.000107
ORF1ab/nsp31868R1868RcgTcgC11AY.410.000294
ORF1ab/nsp31868R1868RcgTcgG11AY.420.00004
ORF1ab/nsp31868R1868LcGtcTt11AY.440.000006
ORF1ab/nsp31868R1868CCgtTgt11AY.440.000006
ORF1ab/nsp31868R1868HcGtcAt11AY.460.000104
ORF1ab/nsp31868R1868RcgTcgC11AY.460.000104
ORF1ab/nsp31868R1868HcGtcAt11AY.46.50.000198
ORF1ab/nsp31868R1868RcgTcgC11AY.46.60.000072
ORF1ab/nsp31868R1868HcGtcAt11AY.470.000031
ORF1ab/nsp31868R1868RcgTcgC11AY.470.000031
ORF1ab/nsp31868R1868HcGtcAt11AY.560.001605
ORF1ab/nsp31868R1868HcGtcAt11AY.60.000041
ORF1ab/nsp31868R1868CCgtTgt11AY.60.000041
ORF1ab/nsp31868R1868delCGT---11AY.600.000938
ORF1ab/nsp31868R1868HcGtcAt11AY.600.000938
ORF1ab/nsp31868R1868PcGtcCt11AY.610.000105
ORF1ab/nsp31868R1868RcgTcgC11AY.610.000105
ORF1ab/nsp31868R1868RcgTcgC11AY.620.000436
ORF1ab/nsp31868R1868RcgTcgC11AY.680.000274
ORF1ab/nsp31868R1868PcGtcCt11AY.75.10.00018
ORF1ab/nsp31868R1868HcGtcAt11AY.790.001211
ORF1ab/nsp31868R1868RcgTcgA11AY.790.001211
ORF1ab/nsp31868R1868delCGT---11AY.810.001992
ORF1ab/nsp31868R1868delCGT---11AY.90.000068
ORF1ab/nsp31868R1868HcGtcAt11AY.9.10.000084
ORF1ab/nsp31868R1868HcGtcAt11AY.9.20.000037
ORF1ab/nsp31868R1868HcGtcAt11AY.99.20.000092
ORF1ab/nsp31868R1868SCgtAgt11B0.000128
ORF1ab/nsp31868R1868PcGtcCt11B0.000128
ORF1ab/nsp31868R1868DCGtGAt11B.10.000009
ORF1ab/nsp31868R1868YCGtTAt11B.10.000009
ORF1ab/nsp31868R1868WCgTTgG11B.10.000009
ORF1ab/nsp31868R1868PcGtcCt11B.1.10.000018
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.10.000327
ORF1ab/nsp31868R1868delCGT---11B.1.1.1590.004673
ORF1ab/nsp31868R1868LcGtcTt11B.1.1.2100.005714
ORF1ab/nsp31868R1868LcGtcTt11B.1.1.2180.007692
ORF1ab/nsp31868R1868delCGT---11B.1.1.2360.006897
ORF1ab/nsp31868R1868RcgTcgC11B.1.1.280.000311
ORF1ab/nsp31868R1868delCGT---11B.1.1.3060.000438
ORF1ab/nsp31868R1868PcGtcCt11B.1.1.3180.000302
ORF1ab/nsp31868R1868delCGT---11B.1.1.3720.000689
ORF1ab/nsp31868R1868RcgTcgC11B.1.1.5190.00004
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.5210.005348
ORF1ab/nsp31868R1868SCgtAgt11B.1.1.70.000001
ORF1ab/nsp31868R1868del2cGTc--11B.1.1.70.000001
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.700.000341
ORF1ab/nsp31868R1868HcGtcAt11B.1.1.80.003584
ORF1ab/nsp31868R1868HcGtcAt11B.1.1110.001175
ORF1ab/nsp31868R1868RcgTcgC11B.1.160.150.00495
ORF1ab/nsp31868R1868del1cgTcg-11B.1.1770.000013
ORF1ab/nsp31868R1868delCGT---11B.1.177.100.000878
ORF1ab/nsp31868R1868delCGT---11B.1.177.150.000631
ORF1ab/nsp31868R1868delCGT---11B.1.177.160.000664
ORF1ab/nsp31868R1868delCGT---11B.1.177.180.00116
ORF1ab/nsp31868R1868delCGT---11B.1.177.210.000076
ORF1ab/nsp31868R1868delCGT---11B.1.177.510.004566
ORF1ab/nsp31868R1868RcgTcgA11B.1.177.60.000977
ORF1ab/nsp31868R1868delCGT---11B.1.177.630.002703
ORF1ab/nsp31868R1868LcGtcTt11B.1.177.70.000165
ORF1ab/nsp31868R1868delCGT---11B.1.177.70.000165
ORF1ab/nsp31868R1868delCGT---11B.1.177.730.000566
ORF1ab/nsp31868R1868RcgTcgC11B.1.177.750.001041
ORF1ab/nsp31868R1868delCGT---11B.1.177.90.001332
ORF1ab/nsp31868R1868SCgtAgt11B.1.20.000009
ORF1ab/nsp31868R1868NCGtAAt11B.1.20.000009
ORF1ab/nsp31868R1868LcGtcTt11B.1.2210.000071
ORF1ab/nsp31868R1868RcgTcgG11B.1.2220.001692
ORF1ab/nsp31868R1868HcGtcAt11B.1.2220.001692
ORF1ab/nsp31868R1868CCgtTgt11B.1.2340.000132
ORF1ab/nsp31868R1868CCgtTgt11B.1.2430.00007
ORF1ab/nsp31868R1868RcgTcgC11B.1.2430.00007
ORF1ab/nsp31868R1868PcGtcCt11B.1.2580.000067
ORF1ab/nsp31868R1868HcGtcAt11B.1.2580.000067
ORF1ab/nsp31868R1868CCgtTgt11B.1.258.30.001675
ORF1ab/nsp31868R1868HcGtcAt11B.1.3110.000275
ORF1ab/nsp31868R1868PcGtcCt11B.1.3510.00003
ORF1ab/nsp31868R1868RcgTcgC11B.1.360.000146
ORF1ab/nsp31868R1868delCGT---11B.1.36.380.001642
ORF1ab/nsp31868R1868RcgTcgC11B.1.3970.004854
ORF1ab/nsp31868R1868PcGtcCt11B.1.3980.002976
ORF1ab/nsp31868R1868RcgTcgC11B.1.4240.008065
ORF1ab/nsp31868R1868RcgTcgC11B.1.4850.014925
ORF1ab/nsp31868R1868HcGtcAt11B.1.5030.002488
ORF1ab/nsp31868R1868HcGtcAt11B.1.5260.000024
ORF1ab/nsp31868R1868HcGtcAt11B.1.5290.055556
ORF1ab/nsp31868R1868SCgtAgt11B.1.5460.003704
ORF1ab/nsp31868R1868LcGtcTt11B.1.5510.00129
ORF1ab/nsp31868R1868ICGtATt11B.1.5770.000687
ORF1ab/nsp31868R1868RcgTcgC11B.1.5950.000261
ORF1ab/nsp31868R1868CCgtTgt11B.1.5950.000261
ORF1ab/nsp31868R1868RcgTcgC11B.1.617.10.000129
ORF1ab/nsp31868R1868SCgtAgt11B.1.617.20.000004
ORF1ab/nsp31868R1868XCGTTAG11B.1.617.20.000004
ORF1ab/nsp31868R1868delCGT---11B.1.617.20.000004
ORF1ab/nsp31868R1868del1Cgt-gt11B.1.617.20.000004
ORF1ab/nsp31868R1868FCGTTTC11B.1.617.20.000004
ORF1ab/nsp31868R1868HcGtcAt11B.1.6190.000871
ORF1ab/nsp31868R1868RcgTcgC11B.1.6230.000536
ORF1ab/nsp31868R1868HcGtcAt11B.1.6320.006711
ORF1ab/nsp31868R1868RcgTcgC11B.1.6370.000073
ORF1ab/nsp31868R1868delCGT---11B.340.013699
ORF1ab/nsp31868R1868del1cGtc-t11B.4.40.018868
ORF1ab/nsp31868R1868delCGT---11C.170.055556
ORF1ab/nsp31868R1868RcgTcgG11C.230.005814
ORF1ab/nsp31868R1868HcGtcAt11C.350.000774
ORF1ab/nsp31868R1868delCGT---11C.370.000116
ORF1ab/nsp31868R1868HcGtcAt11C.370.000116
ORF1ab/nsp31868R1868GCgtGgt11D.20.000075
ORF1ab/nsp31868R1868CCgtTgt11D.20.000075
ORF1ab/nsp31868R1868delCGT---11P.10.000016
ORF1ab/nsp31868R1868SCgtAgt11P.10.000016
ORF1ab/nsp31868R1868NCGtAAt11P.10.000016
ORF1ab/nsp31868R1868RcgTcgA11P.1.140.000048
ORF1ab/nsp31868R1868HcGtcAt11P.1.140.000048
ORF1ab/nsp31868R1868PcGtcCt11P.1.160.000374
ORF1ab/nsp31868R1868HcGtcAt11Q.10.000126
ORF1ab/nsp31868R1868delCGT---11Q.10.000126
ORF1ab/nsp31868R1868HcGtcAt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.