CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1864 | N1864N | N2682N | syn | aaC | aaT | 5063 | 5063 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864H | N2682H | nonsyn | Aac | Cac | 157 | 157 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864del | N2682del | del | AAC | --- | 59 | 59 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864K | N2682K | nonsyn | aaC | aaA | 50 | 47 | 0.94 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864K | N2682K | nonsyn | aaC | aaG | 50 | 3 | 0.06 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864S | N2682S | nonsyn | aAc | aGc | 37 | 37 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864T | N2682T | nonsyn | aAc | aCc | 26 | 25 | 0.961538 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864T | N2682T | nonsyn | aAC | aCT | 26 | 1 | 0.0384615 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864Y | N2682Y | nonsyn | Aac | Tac | 15 | 15 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864del2 | N2682del2 | del | aAC | a-- | 3 | 2 | 0.666667 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864del2 | N2682del2 | del | AAC | G-- | 3 | 1 | 0.333333 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864I | N2682I | nonsyn | aAc | aTc | 2 | 2 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864del1 | N2682del1 | del | aaC | aa- | 2 | 2 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864E | N2682E | nonsyn | AaC | GaG | 1 | 1 | 1 | 8309-8311 |
ORF1ab/nsp3 | 1864 | N1864D | N2682D | nonsyn | Aac | Gac | 1 | 1 | 1 | 8309-8311 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 5063 | 5063 | All | 0.000968 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1557 | 1557 | B.1.619.1 | 0.998717 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1133 | 1133 | B.1.619 | 0.986934 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 687 | 687 | B.1.1.7 | 0.000615 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 175 | 175 | AY.103 | 0.001087 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 169 | 169 | AY.5 | 0.00349 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 157 | 157 | All | 0.00003 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 148 | 148 | AY.4 | 0.00023 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 116 | 116 | AY.44 | 0.000706 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 115 | 115 | B.1.617.2 | 0.000433 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 95 | 95 | AY.43 | 0.000421 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 67 | 67 | B.1.2 | 0.00059 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 59 | 59 | All | 0.000011 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 47 | 50 | All | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaG | 3 | 50 | All | 0.000001 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 49 | 49 | AY.6 | 0.002015 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 41 | 41 | P.1 | 0.000646 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 37 | 37 | All | 0.000007 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 34 | 34 | AY.25 | 0.000205 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 33 | 33 | AY.3 | 0.000328 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 32 | 32 | AY.44 | 0.000195 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 31 | 31 | AY.46 | 0.003226 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 31 | 31 | B.1.1.519 | 0.001231 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 30 | 30 | AY.119 | 0.001059 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 25 | 26 | All | 0.000005 |
ORF1ab/nsp3 | 1864 | N1864T | aAC | aCT | 1 | 26 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 24 | 24 | AY.39 | 0.000593 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 23 | 23 | B.1.526 | 0.000541 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 21 | 21 | B.1.1.214 | 0.001165 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 21 | 21 | B.1.1.291 | 0.01559 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 21 | 21 | B.1.1.369 | 0.009371 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 20 | 20 | B.1.1.269 | 0.027064 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 19 | 19 | B.1.177.52 | 0.033392 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 17 | 17 | C.36 | 0.015483 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 16 | 16 | AY.30 | 0.006332 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 15 | 15 | All | 0.000003 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 14 | 14 | AY.70 | 0.002919 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 12 | 12 | AY.121 | 0.001624 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 10 | 10 | B.1.1.284 | 0.001074 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 7 | 7 | B | 0.000895 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 6 | 6 | B.1.110.3 | 0.00431 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | AY.97 | 0.006803 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 4 | 4 | P.1.13 | 0.003594 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp3 | 1864 | N1864del2 | aAC | a-- | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864del2 | AAC | G-- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | B.1.1.273 | 0.02027 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1864 | N1864del1 | aaC | aa- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864I | aAc | aTc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaG | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.177.48 | 0.00625 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1864 | N1864D | Aac | Gac | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864E | AaC | GaG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1864 | N1864del2 | AAC | G-- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1864 | N1864del1 | aaC | aa- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1864 | N1864D | Aac | Gac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 1864 | N1864del1 | aaC | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1864 | N1864I | aAc | aTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1864 | N1864del2 | aAC | a-- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864del2 | aAC | a-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1864 | N1864I | aAc | aTc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1864 | N1864T | aAc | aCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1864 | N1864Y | Aac | Tac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1864 | N1864E | AaC | GaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1864 | N1864T | aAC | aCT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1864 | N1864K | aaC | aaA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1864 | N1864H | Aac | Cac | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1864 | N1864N | aaC | aaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1864 | N1864del | AAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1864 | N1864S | aAc | aGc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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