CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1864

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31864N1864NN2682NsynaaCaaT5063506318309-8311
ORF1ab/nsp31864N1864HN2682HnonsynAacCac15715718309-8311
ORF1ab/nsp31864N1864delN2682deldelAAC---595918309-8311
ORF1ab/nsp31864N1864KN2682KnonsynaaCaaA50470.948309-8311
ORF1ab/nsp31864N1864KN2682KnonsynaaCaaG5030.068309-8311
ORF1ab/nsp31864N1864SN2682SnonsynaAcaGc373718309-8311
ORF1ab/nsp31864N1864TN2682TnonsynaAcaCc26250.9615388309-8311
ORF1ab/nsp31864N1864TN2682TnonsynaACaCT2610.03846158309-8311
ORF1ab/nsp31864N1864YN2682YnonsynAacTac151518309-8311
ORF1ab/nsp31864N1864del2N2682del2delaACa--320.6666678309-8311
ORF1ab/nsp31864N1864del2N2682del2delAACG--310.3333338309-8311
ORF1ab/nsp31864N1864IN2682InonsynaAcaTc2218309-8311
ORF1ab/nsp31864N1864del1N2682del1delaaCaa-2218309-8311
ORF1ab/nsp31864N1864EN2682EnonsynAaCGaG1118309-8311
ORF1ab/nsp31864N1864DN2682DnonsynAacGac1118309-8311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31864N1864NaaCaaT50635063All0.000968
ORF1ab/nsp31864N1864NaaCaaT15571557B.1.619.10.998717
ORF1ab/nsp31864N1864NaaCaaT11331133B.1.6190.986934
ORF1ab/nsp31864N1864NaaCaaT687687B.1.1.70.000615
ORF1ab/nsp31864N1864NaaCaaT175175AY.1030.001087
ORF1ab/nsp31864N1864NaaCaaT169169AY.50.00349
ORF1ab/nsp31864N1864HAacCac157157All0.00003
ORF1ab/nsp31864N1864NaaCaaT148148AY.40.00023
ORF1ab/nsp31864N1864HAacCac116116AY.440.000706
ORF1ab/nsp31864N1864NaaCaaT115115B.1.617.20.000433
ORF1ab/nsp31864N1864NaaCaaT9595AY.430.000421
ORF1ab/nsp31864N1864NaaCaaT6767B.1.20.00059
ORF1ab/nsp31864N1864delAAC---5959All0.000011
ORF1ab/nsp31864N1864KaaCaaA4750All0.000009
ORF1ab/nsp31864N1864KaaCaaG350All0.000001
ORF1ab/nsp31864N1864NaaCaaT4949AY.60.002015
ORF1ab/nsp31864N1864NaaCaaT4141P.10.000646
ORF1ab/nsp31864N1864NaaCaaT4040B.10.000366
ORF1ab/nsp31864N1864SaAcaGc3737All0.000007
ORF1ab/nsp31864N1864NaaCaaT3434AY.250.000205
ORF1ab/nsp31864N1864KaaCaaA3333AY.30.000328
ORF1ab/nsp31864N1864NaaCaaT3232AY.440.000195
ORF1ab/nsp31864N1864NaaCaaT3131AY.460.003226
ORF1ab/nsp31864N1864NaaCaaT3131B.1.1.5190.001231
ORF1ab/nsp31864N1864NaaCaaT3030AY.1190.001059
ORF1ab/nsp31864N1864NaaCaaT2727AY.30.000269
ORF1ab/nsp31864N1864TaAcaCc2526All0.000005
ORF1ab/nsp31864N1864TaACaCT126All0
ORF1ab/nsp31864N1864NaaCaaT2424AY.390.000593
ORF1ab/nsp31864N1864NaaCaaT2323B.1.1770.000303
ORF1ab/nsp31864N1864NaaCaaT2323B.1.5260.000541
ORF1ab/nsp31864N1864delAAC---2222B.1.1.70.00002
ORF1ab/nsp31864N1864NaaCaaT2222B.1.3510.000654
ORF1ab/nsp31864N1864NaaCaaT2121B.1.1.2140.001165
ORF1ab/nsp31864N1864NaaCaaT2121B.1.1.2910.01559
ORF1ab/nsp31864N1864NaaCaaT2121B.1.1.3690.009371
ORF1ab/nsp31864N1864NaaCaaT2020B.1.1.2690.027064
ORF1ab/nsp31864N1864NaaCaaT1919B.1.177.520.033392
ORF1ab/nsp31864N1864NaaCaaT1717C.360.015483
ORF1ab/nsp31864N1864HAacCac1616AY.30.000159
ORF1ab/nsp31864N1864NaaCaaT1616AY.300.006332
ORF1ab/nsp31864N1864NaaCaaT1616AY.9.20.000588
ORF1ab/nsp31864N1864NaaCaaT1616B.1.4290.000376
ORF1ab/nsp31864N1864YAacTac1515All0.000003
ORF1ab/nsp31864N1864NaaCaaT1515AY.1020.000398
ORF1ab/nsp31864N1864NaaCaaT1515B.1.2210.001065
ORF1ab/nsp31864N1864NaaCaaT1414AY.700.002919
ORF1ab/nsp31864N1864NaaCaaT1313B.1.2580.000865
ORF1ab/nsp31864N1864NaaCaaT1212AY.1210.001624
ORF1ab/nsp31864N1864NaaCaaT1111AY.200.000428
ORF1ab/nsp31864N1864NaaCaaT1111B.1.10.0002
ORF1ab/nsp31864N1864NaaCaaT1010AY.1200.000372
ORF1ab/nsp31864N1864NaaCaaT1010B.1.1.2840.001074
ORF1ab/nsp31864N1864NaaCaaT99AY.9.10.000754
ORF1ab/nsp31864N1864HAacCac88B.1.617.20.00003
ORF1ab/nsp31864N1864YAacTac77AY.250.000042
ORF1ab/nsp31864N1864NaaCaaT77AY.260.000198
ORF1ab/nsp31864N1864HAacCac77AY.40.000011
ORF1ab/nsp31864N1864NaaCaaT77B0.000895
ORF1ab/nsp31864N1864SaAcaGc77B.1.1.70.000006
ORF1ab/nsp31864N1864NaaCaaT66AY.99.20.000553
ORF1ab/nsp31864N1864NaaCaaT66B.1.110.30.00431
ORF1ab/nsp31864N1864NaaCaaT55AY.1090.003698
ORF1ab/nsp31864N1864NaaCaaT55AY.230.000349
ORF1ab/nsp31864N1864NaaCaaT55AY.470.000156
ORF1ab/nsp31864N1864NaaCaaT55AY.540.000477
ORF1ab/nsp31864N1864NaaCaaT55AY.840.002187
ORF1ab/nsp31864N1864KaaCaaA55B.1.1.70.000004
ORF1ab/nsp31864N1864TaAcaCc55B.1.177.350.003455
ORF1ab/nsp31864N1864SaAcaGc55B.1.617.20.000019
ORF1ab/nsp31864N1864NaaCaaT44AD.20.000876
ORF1ab/nsp31864N1864NaaCaaT44AY.1000.000184
ORF1ab/nsp31864N1864NaaCaaT44AY.3.10.000341
ORF1ab/nsp31864N1864NaaCaaT44AY.380.001997
ORF1ab/nsp31864N1864NaaCaaT44AY.970.006803
ORF1ab/nsp31864N1864NaaCaaT44AY.980.000316
ORF1ab/nsp31864N1864delAAC---44B.10.000037
ORF1ab/nsp31864N1864delAAC---44B.1.1770.000053
ORF1ab/nsp31864N1864NaaCaaT44B.1.5960.000349
ORF1ab/nsp31864N1864NaaCaaT44P.1.130.003594
ORF1ab/nsp31864N1864NaaCaaT33A.280.007937
ORF1ab/nsp31864N1864del2aACa--23All0
ORF1ab/nsp31864N1864del2AACG--13All0
ORF1ab/nsp31864N1864SaAcaGc33AY.250.000018
ORF1ab/nsp31864N1864NaaCaaT33AY.360.000445
ORF1ab/nsp31864N1864TaAcaCc33AY.40.000005
ORF1ab/nsp31864N1864NaaCaaT33AY.4.20.000065
ORF1ab/nsp31864N1864delAAC---33AY.4.50.000322
ORF1ab/nsp31864N1864SaAcaGc33AY.430.000013
ORF1ab/nsp31864N1864delAAC---33AY.430.000013
ORF1ab/nsp31864N1864NaaCaaT33AY.680.000821
ORF1ab/nsp31864N1864NaaCaaT33AY.7.10.000338
ORF1ab/nsp31864N1864NaaCaaT33AY.90.000203
ORF1ab/nsp31864N1864NaaCaaT33B.1.1.250.001706
ORF1ab/nsp31864N1864NaaCaaT33B.1.1.2730.02027
ORF1ab/nsp31864N1864YAacTac33B.1.1.70.000003
ORF1ab/nsp31864N1864NaaCaaT33B.1.177.210.000229
ORF1ab/nsp31864N1864NaaCaaT33B.1.258.140.002941
ORF1ab/nsp31864N1864NaaCaaT33B.1.5170.001281
ORF1ab/nsp31864N1864NaaCaaT33P.1.10.000953
ORF1ab/nsp31864N1864NaaCaaT22A.2.50.000998
ORF1ab/nsp31864N1864del1aaCaa-22All0
ORF1ab/nsp31864N1864IaAcaTc22All0
ORF1ab/nsp31864N1864TaAcaCc22AY.1010.000981
ORF1ab/nsp31864N1864NaaCaaT22AY.1160.000574
ORF1ab/nsp31864N1864TaAcaCc22AY.250.000012
ORF1ab/nsp31864N1864TaAcaCc22AY.290.000032
ORF1ab/nsp31864N1864NaaCaaT22AY.330.000134
ORF1ab/nsp31864N1864NaaCaaT22AY.39.10.000079
ORF1ab/nsp31864N1864SaAcaGc22AY.40.000003
ORF1ab/nsp31864N1864KaaCaaG12AY.40.000002
ORF1ab/nsp31864N1864KaaCaaA12AY.40.000002
ORF1ab/nsp31864N1864HAacCac22AY.430.000009
ORF1ab/nsp31864N1864NaaCaaT22AY.46.60.000144
ORF1ab/nsp31864N1864NaaCaaT22AY.75.10.000361
ORF1ab/nsp31864N1864NaaCaaT22AY.960.004149
ORF1ab/nsp31864N1864NaaCaaT22AZ.10.001735
ORF1ab/nsp31864N1864KaaCaaA22AZ.20.001642
ORF1ab/nsp31864N1864delAAC---22B.1.10.000036
ORF1ab/nsp31864N1864NaaCaaT22B.1.1.1530.002191
ORF1ab/nsp31864N1864NaaCaaT22B.1.1.280.000622
ORF1ab/nsp31864N1864NaaCaaT22B.1.177.180.00232
ORF1ab/nsp31864N1864NaaCaaT22B.1.177.480.00625
ORF1ab/nsp31864N1864NaaCaaT22B.1.177.730.001133
ORF1ab/nsp31864N1864NaaCaaT22B.1.177.820.000955
ORF1ab/nsp31864N1864NaaCaaT22B.1.2340.000264
ORF1ab/nsp31864N1864NaaCaaT22B.1.258.110.000793
ORF1ab/nsp31864N1864NaaCaaT22B.1.4270.000101
ORF1ab/nsp31864N1864SaAcaGc22B.1.5260.000047
ORF1ab/nsp31864N1864NaaCaaT22B.1.6210.000177
ORF1ab/nsp31864N1864NaaCaaT22C.370.000232
ORF1ab/nsp31864N1864NaaCaaT22P.1.140.000096
ORF1ab/nsp31864N1864NaaCaaT22P.1.150.000465
ORF1ab/nsp31864N1864NaaCaaT22P.1.20.002312
ORF1ab/nsp31864N1864NaaCaaT22Q.80.00033
ORF1ab/nsp31864N1864TaAcaCc11A.2.50.000499
ORF1ab/nsp31864N1864NaaCaaT11AE.80.000489
ORF1ab/nsp31864N1864DAacGac11All0
ORF1ab/nsp31864N1864EAaCGaG11All0
ORF1ab/nsp31864N1864TaAcaCc11AY.1070.000466
ORF1ab/nsp31864N1864KaaCaaA11AY.1100.000113
ORF1ab/nsp31864N1864NaaCaaT11AY.1100.000113
ORF1ab/nsp31864N1864NaaCaaT11AY.1130.000142
ORF1ab/nsp31864N1864SaAcaGc11AY.1130.000142
ORF1ab/nsp31864N1864NaaCaaT11AY.1180.000063
ORF1ab/nsp31864N1864HAacCac11AY.1180.000063
ORF1ab/nsp31864N1864KaaCaaG11AY.1200.000037
ORF1ab/nsp31864N1864delAAC---11AY.1200.000037
ORF1ab/nsp31864N1864NaaCaaT11AY.130.000161
ORF1ab/nsp31864N1864delAAC---11AY.190.00114
ORF1ab/nsp31864N1864HAacCac11AY.200.000039
ORF1ab/nsp31864N1864delAAC---11AY.250.000006
ORF1ab/nsp31864N1864SaAcaGc11AY.260.000028
ORF1ab/nsp31864N1864YAacTac11AY.260.000028
ORF1ab/nsp31864N1864SaAcaGc11AY.280.00189
ORF1ab/nsp31864N1864SaAcaGc11AY.290.000016
ORF1ab/nsp31864N1864TaAcaCc11AY.29.10.000221
ORF1ab/nsp31864N1864del2AACG--11AY.30.00001
ORF1ab/nsp31864N1864NaaCaaT11AY.320.000532
ORF1ab/nsp31864N1864del1aaCaa-11AY.40.000002
ORF1ab/nsp31864N1864delAAC---11AY.40.000002
ORF1ab/nsp31864N1864YAacTac11AY.40.000002
ORF1ab/nsp31864N1864TaAcaCc11AY.4.20.000022
ORF1ab/nsp31864N1864SaAcaGc11AY.4.40.000409
ORF1ab/nsp31864N1864NaaCaaT11AY.4.50.000107
ORF1ab/nsp31864N1864NaaCaaT11AY.400.000964
ORF1ab/nsp31864N1864NaaCaaT11AY.410.000294
ORF1ab/nsp31864N1864NaaCaaT11AY.420.00004
ORF1ab/nsp31864N1864TaAcaCc11AY.430.000004
ORF1ab/nsp31864N1864KaaCaaA11AY.430.000004
ORF1ab/nsp31864N1864SaAcaGc11AY.46.10.001027
ORF1ab/nsp31864N1864NaaCaaT11AY.46.50.000198
ORF1ab/nsp31864N1864delAAC---11AY.50.000021
ORF1ab/nsp31864N1864NaaCaaT11AY.5.40.000277
ORF1ab/nsp31864N1864NaaCaaT11AY.500.000799
ORF1ab/nsp31864N1864NaaCaaT11AY.530.000288
ORF1ab/nsp31864N1864HAacCac11AY.540.000095
ORF1ab/nsp31864N1864NaaCaaT11AY.580.000907
ORF1ab/nsp31864N1864NaaCaaT11AY.590.00053
ORF1ab/nsp31864N1864YAacTac11AY.60.000041
ORF1ab/nsp31864N1864NaaCaaT11AY.610.000105
ORF1ab/nsp31864N1864TaAcaCc11AY.610.000105
ORF1ab/nsp31864N1864NaaCaaT11AY.620.000436
ORF1ab/nsp31864N1864NaaCaaT11AY.650.000533
ORF1ab/nsp31864N1864NaaCaaT11AY.670.000464
ORF1ab/nsp31864N1864NaaCaaT11AY.710.000475
ORF1ab/nsp31864N1864NaaCaaT11AY.740.000116
ORF1ab/nsp31864N1864NaaCaaT11AY.80.000606
ORF1ab/nsp31864N1864delAAC---11AY.810.001992
ORF1ab/nsp31864N1864SaAcaGc11AY.850.000427
ORF1ab/nsp31864N1864delAAC---11AY.90.000068
ORF1ab/nsp31864N1864SaAcaGc11AY.920.000287
ORF1ab/nsp31864N1864NaaCaaT11AY.920.000287
ORF1ab/nsp31864N1864HAacCac11AY.930.000273
ORF1ab/nsp31864N1864KaaCaaA11AY.950.000761
ORF1ab/nsp31864N1864HAacCac11AY.98.10.000048
ORF1ab/nsp31864N1864NaaCaaT11AY.98.10.000048
ORF1ab/nsp31864N1864delAAC---11B0.000128
ORF1ab/nsp31864N1864DAacGac11B0.000128
ORF1ab/nsp31864N1864KaaCaaG11B.10.000009
ORF1ab/nsp31864N1864SaAcaGc11B.10.000009
ORF1ab/nsp31864N1864TaAcaCc11B.1.10.000018
ORF1ab/nsp31864N1864delAAC---11B.1.1.1590.004673
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.1760.000439
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.2070.001182
ORF1ab/nsp31864N1864TaAcaCc11B.1.1.2320.001815
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.270.00565
ORF1ab/nsp31864N1864delAAC---11B.1.1.3060.000438
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.3120.001912
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.3160.000925
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.3510.002793
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp31864N1864NaaCaaT11B.1.1.4400.011765
ORF1ab/nsp31864N1864del1aaCaa-11B.1.1.70.000001
ORF1ab/nsp31864N1864IaAcaTc11B.1.1.70.000001
ORF1ab/nsp31864N1864TaAcaCc11B.1.1.70.000001
ORF1ab/nsp31864N1864NaaCaaT11B.1.1600.000031
ORF1ab/nsp31864N1864SaAcaGc11B.1.1600.000031
ORF1ab/nsp31864N1864delAAC---11B.1.177.160.000664
ORF1ab/nsp31864N1864delAAC---11B.1.177.170.000821
ORF1ab/nsp31864N1864del2aACa--11B.1.177.180.00116
ORF1ab/nsp31864N1864NaaCaaT11B.1.177.40.000211
ORF1ab/nsp31864N1864delAAC---11B.1.177.630.002703
ORF1ab/nsp31864N1864NaaCaaT11B.1.177.70.000165
ORF1ab/nsp31864N1864delAAC---11B.1.177.870.000728
ORF1ab/nsp31864N1864delAAC---11B.1.177.90.001332
ORF1ab/nsp31864N1864YAacTac11B.1.20.000009
ORF1ab/nsp31864N1864del2aACa--11B.1.20.000009
ORF1ab/nsp31864N1864TaAcaCc11B.1.20.000009
ORF1ab/nsp31864N1864SaAcaGc11B.1.20.000009
ORF1ab/nsp31864N1864NaaCaaT11B.1.2390.001221
ORF1ab/nsp31864N1864NaaCaaT11B.1.2400.000216
ORF1ab/nsp31864N1864NaaCaaT11B.1.2430.00007
ORF1ab/nsp31864N1864SaAcaGc11B.1.2580.000067
ORF1ab/nsp31864N1864KaaCaaA11B.1.2580.000067
ORF1ab/nsp31864N1864NaaCaaT11B.1.258.120.007874
ORF1ab/nsp31864N1864NaaCaaT11B.1.264.10.047619
ORF1ab/nsp31864N1864KaaCaaA11B.1.3110.000275
ORF1ab/nsp31864N1864HAacCac11B.1.3360.002439
ORF1ab/nsp31864N1864NaaCaaT11B.1.351.20.000303
ORF1ab/nsp31864N1864NaaCaaT11B.1.360.000146
ORF1ab/nsp31864N1864NaaCaaT11B.1.36.10.00114
ORF1ab/nsp31864N1864NaaCaaT11B.1.3690.000285
ORF1ab/nsp31864N1864IaAcaTc11B.1.3960.000706
ORF1ab/nsp31864N1864NaaCaaT11B.1.4000.000429
ORF1ab/nsp31864N1864SaAcaGc11B.1.4270.00005
ORF1ab/nsp31864N1864NaaCaaT11B.1.5250.000113
ORF1ab/nsp31864N1864HAacCac11B.1.5250.000113
ORF1ab/nsp31864N1864TaAcaCc11B.1.5260.000024
ORF1ab/nsp31864N1864NaaCaaT11B.1.5460.003704
ORF1ab/nsp31864N1864NaaCaaT11B.1.5540.004405
ORF1ab/nsp31864N1864NaaCaaT11B.1.564.10.001577
ORF1ab/nsp31864N1864NaaCaaT11B.1.5750.000303
ORF1ab/nsp31864N1864NaaCaaT11B.1.617.10.000129
ORF1ab/nsp31864N1864delAAC---11B.1.617.20.000004
ORF1ab/nsp31864N1864YAacTac11B.1.617.20.000004
ORF1ab/nsp31864N1864EAaCGaG11B.1.617.20.000004
ORF1ab/nsp31864N1864TaACaCT11B.1.6190.000871
ORF1ab/nsp31864N1864KaaCaaA11B.1.6370.000073
ORF1ab/nsp31864N1864NaaCaaT11B.1.80.001972
ORF1ab/nsp31864N1864delAAC---11B.340.013699
ORF1ab/nsp31864N1864NaaCaaT11C.140.004329
ORF1ab/nsp31864N1864delAAC---11C.170.055556
ORF1ab/nsp31864N1864NaaCaaT11C.350.000774
ORF1ab/nsp31864N1864SaAcaGc11C.350.000774
ORF1ab/nsp31864N1864delAAC---11C.370.000116
ORF1ab/nsp31864N1864NaaCaaT11D.20.000075
ORF1ab/nsp31864N1864NaaCaaT11N.50.001767
ORF1ab/nsp31864N1864delAAC---11P.10.000016
ORF1ab/nsp31864N1864HAacCac11P.1.150.000232
ORF1ab/nsp31864N1864NaaCaaT11P.1.70.000319
ORF1ab/nsp31864N1864delAAC---11Q.10.000126
ORF1ab/nsp31864N1864SaAcaGc11R.10.00009