CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1860

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31860N1860NN2678NsynaaCaaT102541025418297-8299
ORF1ab/nsp31860N1860delN2678deldelAAC---656518297-8299
ORF1ab/nsp31860N1860HN2678HnonsynAacCac7718297-8299
ORF1ab/nsp31860N1860del1N2678del1delaaCaa-540.88297-8299
ORF1ab/nsp31860N1860del1N2678del1delAaC-aT510.28297-8299
ORF1ab/nsp31860N1860SN2678SnonsynaAcaGc4418297-8299
ORF1ab/nsp31860N1860DN2678DnonsynAacGac3318297-8299
ORF1ab/nsp31860N1860KN2678KnonsynaaCaaA3318297-8299
ORF1ab/nsp31860N1860TN2678TnonsynaAcaCc2218297-8299
ORF1ab/nsp31860N1860del2N2678del2delAAc--c1118297-8299
ORF1ab/nsp31860N1860VN2678VnonsynAACGTT1118297-8299
ORF1ab/nsp31860N1860YN2678YnonsynAacTac1118297-8299
ORF1ab/nsp31860N1860IN2678InonsynaACaTA1118297-8299

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31860N1860NaaCaaT1025410254All0.001961
ORF1ab/nsp31860N1860NaaCaaT34433443AY.40.005359
ORF1ab/nsp31860N1860NaaCaaT992992B.1.1.70.000888
ORF1ab/nsp31860N1860NaaCaaT885885AY.4.30.744949
ORF1ab/nsp31860N1860NaaCaaT838838AY.4.20.018175
ORF1ab/nsp31860N1860NaaCaaT414414B.1.617.20.001559
ORF1ab/nsp31860N1860NaaCaaT327327AY.430.001449
ORF1ab/nsp31860N1860NaaCaaT212212AY.1030.001316
ORF1ab/nsp31860N1860NaaCaaT201201B.1.360.029326
ORF1ab/nsp31860N1860NaaCaaT184184B.1.3510.00547
ORF1ab/nsp31860N1860NaaCaaT139139AY.440.000846
ORF1ab/nsp31860N1860NaaCaaT138138B.1.1.5250.754098
ORF1ab/nsp31860N1860NaaCaaT127127B.1.20.001118
ORF1ab/nsp31860N1860NaaCaaT124124B.1.1770.001633
ORF1ab/nsp31860N1860NaaCaaT114114B.1.3750.093443
ORF1ab/nsp31860N1860NaaCaaT103103B.1.177.120.015625
ORF1ab/nsp31860N1860NaaCaaT101101B.10.000925
ORF1ab/nsp31860N1860NaaCaaT9090B.1.1.280.028011
ORF1ab/nsp31860N1860NaaCaaT7373P.10.00115
ORF1ab/nsp31860N1860NaaCaaT6868AY.250.000409
ORF1ab/nsp31860N1860delAAC---6565All0.000012
ORF1ab/nsp31860N1860NaaCaaT6363B.1.10.001143
ORF1ab/nsp31860N1860NaaCaaT6363B.1.1600.001965
ORF1ab/nsp31860N1860NaaCaaT5555B.1.177.160.036545
ORF1ab/nsp31860N1860NaaCaaT5252B.1.2340.006861
ORF1ab/nsp31860N1860NaaCaaT5151B.1.258.170.005303
ORF1ab/nsp31860N1860NaaCaaT4848AY.360.007114
ORF1ab/nsp31860N1860NaaCaaT4747AY.30.000467
ORF1ab/nsp31860N1860NaaCaaT3939B.1.2430.002714
ORF1ab/nsp31860N1860NaaCaaT3939B.1.4290.000918
ORF1ab/nsp31860N1860NaaCaaT3636AY.1020.000955
ORF1ab/nsp31860N1860NaaCaaT3636AY.200.001399
ORF1ab/nsp31860N1860NaaCaaT3535B.1.1.5190.00139
ORF1ab/nsp31860N1860NaaCaaT3333AY.260.000934
ORF1ab/nsp31860N1860NaaCaaT3333AY.920.00948
ORF1ab/nsp31860N1860NaaCaaT3232AY.1000.001472
ORF1ab/nsp31860N1860NaaCaaT3030AY.390.000741
ORF1ab/nsp31860N1860NaaCaaT3030B.1.6370.002192
ORF1ab/nsp31860N1860NaaCaaT2727B.1.2210.001918
ORF1ab/nsp31860N1860NaaCaaT2727B.1.3110.007414
ORF1ab/nsp31860N1860delAAC---2626B.1.1.70.000023
ORF1ab/nsp31860N1860NaaCaaT2525B.1.1.4830.961538
ORF1ab/nsp31860N1860NaaCaaT2525Q.10.003158
ORF1ab/nsp31860N1860NaaCaaT2323AY.46.10.023614
ORF1ab/nsp31860N1860NaaCaaT2121B.1.214.20.01259
ORF1ab/nsp31860N1860NaaCaaT2121B.1.4270.00106
ORF1ab/nsp31860N1860NaaCaaT1919AY.1100.002141
ORF1ab/nsp31860N1860NaaCaaT1919AY.330.001269
ORF1ab/nsp31860N1860NaaCaaT1919AY.9.20.000698
ORF1ab/nsp31860N1860NaaCaaT1717AY.1210.0023
ORF1ab/nsp31860N1860NaaCaaT1616AY.46.60.001155
ORF1ab/nsp31860N1860NaaCaaT1616AY.98.10.000775
ORF1ab/nsp31860N1860NaaCaaT1616B.1.1.2840.001718
ORF1ab/nsp31860N1860NaaCaaT1414AY.1130.001993
ORF1ab/nsp31860N1860NaaCaaT1414AY.50.000289
ORF1ab/nsp31860N1860NaaCaaT1313AY.140.001144
ORF1ab/nsp31860N1860NaaCaaT1313AY.4.2.10.001937
ORF1ab/nsp31860N1860NaaCaaT1313AY.60.000535
ORF1ab/nsp31860N1860NaaCaaT1313AY.90.000879
ORF1ab/nsp31860N1860NaaCaaT1313B.1.438.31
ORF1ab/nsp31860N1860NaaCaaT1313B.1.5260.000306
ORF1ab/nsp31860N1860NaaCaaT1212AY.470.000373
ORF1ab/nsp31860N1860NaaCaaT1111AY.1190.000388
ORF1ab/nsp31860N1860NaaCaaT1111AY.290.000174
ORF1ab/nsp31860N1860NaaCaaT1111AY.39.10.000436
ORF1ab/nsp31860N1860NaaCaaT1111B.1.1.2140.00061
ORF1ab/nsp31860N1860NaaCaaT1111B.1.36.80.011
ORF1ab/nsp31860N1860NaaCaaT1111B.1.5750.003337
ORF1ab/nsp31860N1860NaaCaaT1010AY.460.001041
ORF1ab/nsp31860N1860NaaCaaT1010B.1.1.40.029762
ORF1ab/nsp31860N1860NaaCaaT1010B.1.4250.02994
ORF1ab/nsp31860N1860NaaCaaT1010C.370.001161
ORF1ab/nsp31860N1860NaaCaaT99B.1.5250.001018
ORF1ab/nsp31860N1860NaaCaaT88AY.1200.000297
ORF1ab/nsp31860N1860NaaCaaT88AY.230.000558
ORF1ab/nsp31860N1860NaaCaaT88AY.420.000322
ORF1ab/nsp31860N1860NaaCaaT88B.1.3980.02381
ORF1ab/nsp31860N1860HAacCac77All0.000001
ORF1ab/nsp31860N1860NaaCaaT77AU.10.008861
ORF1ab/nsp31860N1860NaaCaaT77AY.750.000392
ORF1ab/nsp31860N1860NaaCaaT77AY.9.10.000586
ORF1ab/nsp31860N1860NaaCaaT77B.1.1.3170.002882
ORF1ab/nsp31860N1860NaaCaaT77B.1.177.380.072917
ORF1ab/nsp31860N1860NaaCaaT77B.1.2580.000466
ORF1ab/nsp31860N1860NaaCaaT77B.1.36.290.003621
ORF1ab/nsp31860N1860NaaCaaT77B.1.4560.022876
ORF1ab/nsp31860N1860NaaCaaT66AY.1170.000507
ORF1ab/nsp31860N1860NaaCaaT66AY.240.002586
ORF1ab/nsp31860N1860NaaCaaT66AY.3.10.000512
ORF1ab/nsp31860N1860NaaCaaT66AY.340.000582
ORF1ab/nsp31860N1860NaaCaaT66AY.660.006417
ORF1ab/nsp31860N1860NaaCaaT66B.1.36.220.007246
ORF1ab/nsp31860N1860NaaCaaT66P.1.140.000287
ORF1ab/nsp31860N1860del1aaCaa-45All0.000001
ORF1ab/nsp31860N1860del1AaC-aT15All0
ORF1ab/nsp31860N1860NaaCaaT55AY.1050.003215
ORF1ab/nsp31860N1860HAacCac55AY.430.000022
ORF1ab/nsp31860N1860NaaCaaT55AY.540.000477
ORF1ab/nsp31860N1860NaaCaaT55AY.610.000524
ORF1ab/nsp31860N1860NaaCaaT55AY.7.10.000564
ORF1ab/nsp31860N1860NaaCaaT55AY.99.20.000461
ORF1ab/nsp31860N1860NaaCaaT55B.1.1.2220.00102
ORF1ab/nsp31860N1860NaaCaaT55B.1.1.3680.015432
ORF1ab/nsp31860N1860NaaCaaT55B.1.177.210.000382
ORF1ab/nsp31860N1860NaaCaaT55B.1.177.870.003639
ORF1ab/nsp31860N1860NaaCaaT55B.1.466.20.001956
ORF1ab/nsp31860N1860NaaCaaT55D.20.000375
ORF1ab/nsp31860N1860NaaCaaT55R.10.00045
ORF1ab/nsp31860N1860SaAcaGc44All0.000001
ORF1ab/nsp31860N1860delAAC---44AY.430.000018
ORF1ab/nsp31860N1860NaaCaaT44B.1.1.1590.018692
ORF1ab/nsp31860N1860NaaCaaT44B.1.1.2940.005063
ORF1ab/nsp31860N1860NaaCaaT44B.1.1.330.001684
ORF1ab/nsp31860N1860NaaCaaT44B.1.1.890.024242
ORF1ab/nsp31860N1860delAAC---44B.1.1770.000053
ORF1ab/nsp31860N1860NaaCaaT44B.1.177.100.003512
ORF1ab/nsp31860N1860NaaCaaT44B.1.177.600.000874
ORF1ab/nsp31860N1860NaaCaaT44B.1.177.860.000734
ORF1ab/nsp31860N1860NaaCaaT44B.1.617.10.000516
ORF1ab/nsp31860N1860NaaCaaT44B.1.6210.000354
ORF1ab/nsp31860N1860DAacGac33All0.000001
ORF1ab/nsp31860N1860KaaCaaA33All0.000001
ORF1ab/nsp31860N1860NaaCaaT33AY.1110.000549
ORF1ab/nsp31860N1860NaaCaaT33AY.116.10.000934
ORF1ab/nsp31860N1860NaaCaaT33AY.1180.000188
ORF1ab/nsp31860N1860delAAC---33AY.4.50.000322
ORF1ab/nsp31860N1860NaaCaaT33AY.810.005976
ORF1ab/nsp31860N1860NaaCaaT33AY.850.001282
ORF1ab/nsp31860N1860NaaCaaT33AY.980.000237
ORF1ab/nsp31860N1860NaaCaaT33B0.000383
ORF1ab/nsp31860N1860delAAC---33B.10.000027
ORF1ab/nsp31860N1860NaaCaaT33B.1.1.2010.073171
ORF1ab/nsp31860N1860NaaCaaT33B.1.1.3120.005736
ORF1ab/nsp31860N1860NaaCaaT33B.1.1390.002199
ORF1ab/nsp31860N1860NaaCaaT33B.1.2390.003663
ORF1ab/nsp31860N1860NaaCaaT33B.1.5820.001472
ORF1ab/nsp31860N1860NaaCaaT33B.1.5960.000261
ORF1ab/nsp31860N1860NaaCaaT33B.1.6090.001438
ORF1ab/nsp31860N1860NaaCaaT33P.1.10.000953
ORF1ab/nsp31860N1860NaaCaaT33P.1.100.000808
ORF1ab/nsp31860N1860NaaCaaT33Q.80.000495
ORF1ab/nsp31860N1860NaaCaaT22AD.20.000438
ORF1ab/nsp31860N1860TaAcaCc22All0
ORF1ab/nsp31860N1860NaaCaaT22AY.1060.00067
ORF1ab/nsp31860N1860NaaCaaT22AY.1140.000462
ORF1ab/nsp31860N1860NaaCaaT22AY.120.000632
ORF1ab/nsp31860N1860NaaCaaT22AY.23.10.000835
ORF1ab/nsp31860N1860NaaCaaT22AY.270.000129
ORF1ab/nsp31860N1860NaaCaaT22AY.300.000791
ORF1ab/nsp31860N1860NaaCaaT22AY.4.50.000215
ORF1ab/nsp31860N1860NaaCaaT22AY.450.000243
ORF1ab/nsp31860N1860NaaCaaT22AY.46.30.001867
ORF1ab/nsp31860N1860NaaCaaT22AY.5.30.000675
ORF1ab/nsp31860N1860NaaCaaT22AY.510.001818
ORF1ab/nsp31860N1860NaaCaaT22AY.550.001835
ORF1ab/nsp31860N1860NaaCaaT22AY.670.000929
ORF1ab/nsp31860N1860NaaCaaT22AY.840.000875
ORF1ab/nsp31860N1860NaaCaaT22AY.930.000546
ORF1ab/nsp31860N1860delAAC---22B.1.10.000036
ORF1ab/nsp31860N1860NaaCaaT22B.1.1.1890.003026
ORF1ab/nsp31860N1860NaaCaaT22B.1.1.2200.003717
ORF1ab/nsp31860N1860NaaCaaT22B.1.1.370.000386
ORF1ab/nsp31860N1860NaaCaaT22B.1.177.440.001038
ORF1ab/nsp31860N1860NaaCaaT22B.1.177.70.00033
ORF1ab/nsp31860N1860NaaCaaT22B.1.177.830.002963
ORF1ab/nsp31860N1860NaaCaaT22B.1.230.012121
ORF1ab/nsp31860N1860NaaCaaT22B.1.2360.004107
ORF1ab/nsp31860N1860NaaCaaT22B.1.2400.000431
ORF1ab/nsp31860N1860NaaCaaT22B.1.36.170.000988
ORF1ab/nsp31860N1860NaaCaaT22B.1.36.360.001204
ORF1ab/nsp31860N1860NaaCaaT22B.1.438.10.000215
ORF1ab/nsp31860N1860NaaCaaT22B.1.4990.002101
ORF1ab/nsp31860N1860NaaCaaT22B.1.5950.000522
ORF1ab/nsp31860N1860delAAC---22B.1.617.20.000008
ORF1ab/nsp31860N1860NaaCaaT22B.1.6280.000705
ORF1ab/nsp31860N1860NaaCaaT22C.140.008658
ORF1ab/nsp31860N1860delAAC---22P.10.000032
ORF1ab/nsp31860N1860NaaCaaT22P.1.150.000465
ORF1ab/nsp31860N1860NaaCaaT22P.1.70.000639
ORF1ab/nsp31860N1860NaaCaaT22P.70.008734
ORF1ab/nsp31860N1860NaaCaaT22Q.30.00029
ORF1ab/nsp31860N1860KaaCaaA11A0.000387
ORF1ab/nsp31860N1860NaaCaaT11A.2.50.000499
ORF1ab/nsp31860N1860NaaCaaT11A.40.012821
ORF1ab/nsp31860N1860NaaCaaT11AD.2.10.045455
ORF1ab/nsp31860N1860NaaCaaT11AE.10.011364
ORF1ab/nsp31860N1860VAACGTT11All0
ORF1ab/nsp31860N1860YAacTac11All0
ORF1ab/nsp31860N1860del2AAc--c11All0
ORF1ab/nsp31860N1860IaACaTA11All0
ORF1ab/nsp31860N1860NaaCaaT11AU.30.00211
ORF1ab/nsp31860N1860delAAC---11AY.1010.00049
ORF1ab/nsp31860N1860NaaCaaT11AY.1160.000287
ORF1ab/nsp31860N1860delAAC---11AY.1200.000037
ORF1ab/nsp31860N1860NaaCaaT11AY.120.2.10.000498
ORF1ab/nsp31860N1860NaaCaaT11AY.130.000161
ORF1ab/nsp31860N1860NaaCaaT11AY.16.10.00047
ORF1ab/nsp31860N1860NaaCaaT11AY.170.008197
ORF1ab/nsp31860N1860NaaCaaT11AY.180.010101
ORF1ab/nsp31860N1860delAAC---11AY.190.00114
ORF1ab/nsp31860N1860NaaCaaT11AY.190.00114
ORF1ab/nsp31860N1860SaAcaGc11AY.230.00007
ORF1ab/nsp31860N1860delAAC---11AY.250.000006
ORF1ab/nsp31860N1860NaaCaaT11AY.29.10.000221
ORF1ab/nsp31860N1860TaAcaCc11AY.30.00001
ORF1ab/nsp31860N1860NaaCaaT11AY.34.10.00051
ORF1ab/nsp31860N1860NaaCaaT11AY.350.000233
ORF1ab/nsp31860N1860NaaCaaT11AY.370.000316
ORF1ab/nsp31860N1860NaaCaaT11AY.380.000499
ORF1ab/nsp31860N1860KaaCaaA11AY.390.000025
ORF1ab/nsp31860N1860DAacGac11AY.40.000002
ORF1ab/nsp31860N1860SaAcaGc11AY.40.000002
ORF1ab/nsp31860N1860delAAC---11AY.40.000002
ORF1ab/nsp31860N1860del1AaC-aT11AY.460.000104
ORF1ab/nsp31860N1860del2AAc--c11AY.46.20.000635
ORF1ab/nsp31860N1860NaaCaaT11AY.46.20.000635
ORF1ab/nsp31860N1860NaaCaaT11AY.46.40.000165
ORF1ab/nsp31860N1860NaaCaaT11AY.46.50.000198
ORF1ab/nsp31860N1860delAAC---11AY.50.000021
ORF1ab/nsp31860N1860NaaCaaT11AY.600.000938
ORF1ab/nsp31860N1860NaaCaaT11AY.640.000595
ORF1ab/nsp31860N1860NaaCaaT11AY.690.000187
ORF1ab/nsp31860N1860NaaCaaT11AY.70.000196
ORF1ab/nsp31860N1860TaAcaCc11AY.70.000196
ORF1ab/nsp31860N1860NaaCaaT11AY.730.000665
ORF1ab/nsp31860N1860NaaCaaT11AY.770.001127
ORF1ab/nsp31860N1860NaaCaaT11AY.790.001211
ORF1ab/nsp31860N1860delAAC---11AY.810.001992
ORF1ab/nsp31860N1860NaaCaaT11AY.820.001357
ORF1ab/nsp31860N1860VAACGTT11AY.850.000427
ORF1ab/nsp31860N1860NaaCaaT11AY.880.000884
ORF1ab/nsp31860N1860delAAC---11AY.90.000068
ORF1ab/nsp31860N1860del1aaCaa-11AY.970.001701
ORF1ab/nsp31860N1860DAacGac11B.10.000009
ORF1ab/nsp31860N1860IaACaTA11B.10.000009
ORF1ab/nsp31860N1860del1aaCaa-11B.10.000009
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.1280.007092
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.1530.001095
ORF1ab/nsp31860N1860delAAC---11B.1.1.1590.004673
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.2160.00089
ORF1ab/nsp31860N1860HAacCac11B.1.1.2360.006897
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.2770.000759
ORF1ab/nsp31860N1860delAAC---11B.1.1.3060.000438
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3060.000438
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3070.002532
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3350.012987
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3440.010753
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3540.004386
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3740.002375
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3890.006061
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.3980.003226
ORF1ab/nsp31860N1860KaaCaaA11B.1.1.4480.002033
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.4480.002033
ORF1ab/nsp31860N1860del1aaCaa-11B.1.1.70.000001
ORF1ab/nsp31860N1860NaaCaaT11B.1.1.700.000341
ORF1ab/nsp31860N1860NaaCaaT11B.1.1570.002985
ORF1ab/nsp31860N1860NaaCaaT11B.1.160.140.002119
ORF1ab/nsp31860N1860NaaCaaT11B.1.160.160.000929
ORF1ab/nsp31860N1860NaaCaaT11B.1.160.260.002421
ORF1ab/nsp31860N1860SaAcaGc11B.1.1770.000013
ORF1ab/nsp31860N1860delAAC---11B.1.177.160.000664
ORF1ab/nsp31860N1860delAAC---11B.1.177.170.000821
ORF1ab/nsp31860N1860NaaCaaT11B.1.177.230.003236
ORF1ab/nsp31860N1860NaaCaaT11B.1.177.570.000281
ORF1ab/nsp31860N1860delAAC---11B.1.177.630.002703
ORF1ab/nsp31860N1860NaaCaaT11B.1.177.730.000566
ORF1ab/nsp31860N1860NaaCaaT11B.1.177.750.001041
ORF1ab/nsp31860N1860delAAC---11B.1.177.870.000728
ORF1ab/nsp31860N1860delAAC---11B.1.177.90.001332
ORF1ab/nsp31860N1860DAacGac11B.1.20.000009
ORF1ab/nsp31860N1860YAacTac11B.1.20.000009
ORF1ab/nsp31860N1860NaaCaaT11B.1.2100.002132
ORF1ab/nsp31860N1860NaaCaaT11B.1.2180.005155
ORF1ab/nsp31860N1860NaaCaaT11B.1.2320.000537
ORF1ab/nsp31860N1860del1aaCaa-11B.1.2470.014925
ORF1ab/nsp31860N1860NaaCaaT11B.1.258.110.000396
ORF1ab/nsp31860N1860NaaCaaT11B.1.258.70.001912
ORF1ab/nsp31860N1860NaaCaaT11B.1.2930.0125
ORF1ab/nsp31860N1860NaaCaaT11B.1.351.30.000876
ORF1ab/nsp31860N1860NaaCaaT11B.1.36.10.00114
ORF1ab/nsp31860N1860NaaCaaT11B.1.36.100.004785
ORF1ab/nsp31860N1860NaaCaaT11B.1.3610.001289
ORF1ab/nsp31860N1860NaaCaaT11B.1.3800.006623
ORF1ab/nsp31860N1860NaaCaaT11B.1.3960.000706
ORF1ab/nsp31860N1860NaaCaaT11B.1.3990.001934
ORF1ab/nsp31860N1860NaaCaaT11B.1.4280.00102
ORF1ab/nsp31860N1860NaaCaaT11B.1.428.20.033333
ORF1ab/nsp31860N1860NaaCaaT11B.1.4380.006536
ORF1ab/nsp31860N1860NaaCaaT11B.1.4420.035714
ORF1ab/nsp31860N1860NaaCaaT11B.1.4590.004082
ORF1ab/nsp31860N1860NaaCaaT11B.1.4680.005714
ORF1ab/nsp31860N1860NaaCaaT11B.1.4700.001404
ORF1ab/nsp31860N1860NaaCaaT11B.1.5090.000866
ORF1ab/nsp31860N1860NaaCaaT11B.1.5370.02
ORF1ab/nsp31860N1860NaaCaaT11B.1.5760.000907
ORF1ab/nsp31860N1860HAacCac11B.1.617.20.000004
ORF1ab/nsp31860N1860NaaCaaT11B.1.619.10.000641
ORF1ab/nsp31860N1860NaaCaaT11B.1.621.10.000506
ORF1ab/nsp31860N1860NaaCaaT11B.1.6260.005714
ORF1ab/nsp31860N1860NaaCaaT11C.10.002392
ORF1ab/nsp31860N1860delAAC---11C.170.055556
ORF1ab/nsp31860N1860delAAC---11C.370.000116
ORF1ab/nsp31860N1860NaaCaaT11C.37.10.002618
ORF1ab/nsp31860N1860delAAC---11D.20.000075
ORF1ab/nsp31860N1860NaaCaaT11N.40.004255
ORF1ab/nsp31860N1860NaaCaaT11P.1.120.000484
ORF1ab/nsp31860N1860SaAcaGc11P.1.140.000048
ORF1ab/nsp31860N1860NaaCaaT11P.1.20.001156
ORF1ab/nsp31860N1860NaaCaaT11P.20.000187
ORF1ab/nsp31860N1860delAAC---11Q.10.000126
ORF1ab/nsp31860N1860NaaCaaT11Q.40.000455
ORF1ab/nsp31860N1860NaaCaaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.