CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1853

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31853N1853NN2671NsynaaTaaC80680618276-8278
ORF1ab/nsp31853N1853delN2671deldelAAT---797918276-8278
ORF1ab/nsp31853N1853YN2671YnonsynAatTat40370.9258276-8278
ORF1ab/nsp31853N1853YN2671YnonsynAaTTaC4030.0758276-8278
ORF1ab/nsp31853N1853del1N2671del1delAat-at870.8758276-8278
ORF1ab/nsp31853N1853del1N2671del1delAAt-Rt810.1258276-8278
ORF1ab/nsp31853N1853SN2671SnonsynaAtaGt6618276-8278
ORF1ab/nsp31853N1853IN2671InonsynaAtaTt530.68276-8278
ORF1ab/nsp31853N1853IN2671InonsynaATaTA520.48276-8278
ORF1ab/nsp31853N1853DN2671DnonsynAatGat4418276-8278
ORF1ab/nsp31853N1853KN2671KnonsynaaTaaA4418276-8278
ORF1ab/nsp31853N1853XN2671XnonsynAaTTaA430.758276-8278
ORF1ab/nsp31853N1853XN2671XnonsynAATTGA410.258276-8278
ORF1ab/nsp31853N1853CN2671CnonsynAAtTGt3318276-8278
ORF1ab/nsp31853N1853HN2671HnonsynAatCat2218276-8278
ORF1ab/nsp31853N1853RN2671RnonsynAAtCGt210.58276-8278
ORF1ab/nsp31853N1853RN2671RnonsynaATaGA210.58276-8278
ORF1ab/nsp31853N1853del2N2671del2delAAT--N1118276-8278
ORF1ab/nsp31853N1853FN2671FnonsynAAtTTt1118276-8278
ORF1ab/nsp31853N1853LN2671LnonsynAATTTA1118276-8278

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31853N1853NaaTaaC806806All0.000154
ORF1ab/nsp31853N1853NaaTaaC280280AY.430.001241
ORF1ab/nsp31853N1853NaaTaaC135135C.260.992647
ORF1ab/nsp31853N1853NaaTaaC8989AY.40.000139
ORF1ab/nsp31853N1853NaaTaaC8787B.1.1.70.000078
ORF1ab/nsp31853N1853delAAT---7979All0.000015
ORF1ab/nsp31853N1853YAatTat3740All0.000007
ORF1ab/nsp31853N1853YAaTTaC340All0.000001
ORF1ab/nsp31853N1853NaaTaaC2828AY.1030.000174
ORF1ab/nsp31853N1853delAAT---2626B.1.1.70.000023
ORF1ab/nsp31853N1853NaaTaaC1818AY.30.000179
ORF1ab/nsp31853N1853NaaTaaC1414B.1.3320.048951
ORF1ab/nsp31853N1853NaaTaaC1313AY.1190.000459
ORF1ab/nsp31853N1853YAatTat1313B.10.000119
ORF1ab/nsp31853N1853NaaTaaC1111B.1.617.20.000041
ORF1ab/nsp31853N1853delAAT---1010B0.001278
ORF1ab/nsp31853N1853NaaTaaC99AY.440.000055
ORF1ab/nsp31853N1853del1Aat-at78All0.000001
ORF1ab/nsp31853N1853del1AAt-Rt18All0
ORF1ab/nsp31853N1853NaaTaaC88B.10.000073
ORF1ab/nsp31853N1853SaAtaGt66All0.000001
ORF1ab/nsp31853N1853NaaTaaC66AY.290.000095
ORF1ab/nsp31853N1853NaaTaaC66AY.470.000187
ORF1ab/nsp31853N1853NaaTaaC66AY.730.003992
ORF1ab/nsp31853N1853NaaTaaC66B.1.10.000109
ORF1ab/nsp31853N1853NaaTaaC66P.10.000095
ORF1ab/nsp31853N1853IaAtaTt35All0.000001
ORF1ab/nsp31853N1853IaATaTA25All0
ORF1ab/nsp31853N1853NaaTaaC55AY.200.000194
ORF1ab/nsp31853N1853YAatTat55B.1.10.000091
ORF1ab/nsp31853N1853KaaTaaA440.222222
ORF1ab/nsp31853N1853XAaTTaA340.166667
ORF1ab/nsp31853N1853XAATTGA140.055556
ORF1ab/nsp31853N1853DAatGat44All0.000001
ORF1ab/nsp31853N1853KaaTaaA44All0.000001
ORF1ab/nsp31853N1853XAaTTaA34All0.000001
ORF1ab/nsp31853N1853XAATTGA14All0
ORF1ab/nsp31853N1853NaaTaaC44AY.4.20.000087
ORF1ab/nsp31853N1853delAAT---44AY.4.50.00043
ORF1ab/nsp31853N1853YAatTat44B0.000511
ORF1ab/nsp31853N1853delAAT---44B.10.000037
ORF1ab/nsp31853N1853NaaTaaC44B.1.1.10.001307
ORF1ab/nsp31853N1853delAAT---44B.1.1770.000053
ORF1ab/nsp31853N1853YAatTat330.166667
ORF1ab/nsp31853N1853YAaTTaC23A.2.40.006734
ORF1ab/nsp31853N1853YAatTat13A.2.40.003367
ORF1ab/nsp31853N1853CAAtTGt33All0.000001
ORF1ab/nsp31853N1853NaaTaaC33AY.1000.000138
ORF1ab/nsp31853N1853NaaTaaC33AY.1020.00008
ORF1ab/nsp31853N1853delAAT---33AY.40.000005
ORF1ab/nsp31853N1853delAAT---33AY.430.000013
ORF1ab/nsp31853N1853NaaTaaC33AY.46.20.001906
ORF1ab/nsp31853N1853NaaTaaC33AY.690.00056
ORF1ab/nsp31853N1853DAatGat33B.1.1.70.000003
ORF1ab/nsp31853N1853NaaTaaC33B.1.160.310.024194
ORF1ab/nsp31853N1853IaAtaTt120.055556
ORF1ab/nsp31853N1853IaATaTA120.055556
ORF1ab/nsp31853N1853HAatCat22All0
ORF1ab/nsp31853N1853RaATaGA12All0
ORF1ab/nsp31853N1853RAAtCGt12All0
ORF1ab/nsp31853N1853NaaTaaC22AY.1200.000074
ORF1ab/nsp31853N1853NaaTaaC22AY.240.000862
ORF1ab/nsp31853N1853NaaTaaC22AY.250.000012
ORF1ab/nsp31853N1853NaaTaaC22AY.390.000049
ORF1ab/nsp31853N1853NaaTaaC22AY.46.40.000329
ORF1ab/nsp31853N1853delAAT---22B.1.10.000036
ORF1ab/nsp31853N1853NaaTaaC22B.1.1.1630.015267
ORF1ab/nsp31853N1853NaaTaaC22B.1.1.3480.001592
ORF1ab/nsp31853N1853SaAtaGt22B.1.1.70.000002
ORF1ab/nsp31853N1853delAAT---22B.1.177.160.001329
ORF1ab/nsp31853N1853NaaTaaC22C.350.001548
ORF1ab/nsp31853N1853NaaTaaC22C.360.001821
ORF1ab/nsp31853N1853delAAT---22P.10.000032
ORF1ab/nsp31853N1853NaaTaaC22Q.80.00033
ORF1ab/nsp31853N1853RaATaGA110.055556
ORF1ab/nsp31853N1853LAATTTA110.055556
ORF1ab/nsp31853N1853FAAtTTt110.055556
ORF1ab/nsp31853N1853SaAtaGt110.055556
ORF1ab/nsp31853N1853CAAtTGt110.055556
ORF1ab/nsp31853N1853SaAtaGt11A.20.000662
ORF1ab/nsp31853N1853NaaTaaC11A.2.40.003367
ORF1ab/nsp31853N1853del2AAT--N11All0
ORF1ab/nsp31853N1853LAATTTA11All0
ORF1ab/nsp31853N1853FAAtTTt11All0
ORF1ab/nsp31853N1853YAatTat11AU.20.002421
ORF1ab/nsp31853N1853NaaTaaC11AY.1010.00049
ORF1ab/nsp31853N1853delAAT---11AY.1200.000037
ORF1ab/nsp31853N1853NaaTaaC11AY.1210.000135
ORF1ab/nsp31853N1853NaaTaaC11AY.160.00038
ORF1ab/nsp31853N1853delAAT---11AY.190.00114
ORF1ab/nsp31853N1853CAAtTGt11AY.230.00007
ORF1ab/nsp31853N1853YAatTat11AY.230.00007
ORF1ab/nsp31853N1853del1AAt-Rt11AY.230.00007
ORF1ab/nsp31853N1853SaAtaGt11AY.230.00007
ORF1ab/nsp31853N1853NaaTaaC11AY.23.10.000417
ORF1ab/nsp31853N1853delAAT---11AY.250.000006
ORF1ab/nsp31853N1853NaaTaaC11AY.3.10.000085
ORF1ab/nsp31853N1853DAatGat11AY.39.10.00004
ORF1ab/nsp31853N1853NaaTaaC11AY.4.2.10.000149
ORF1ab/nsp31853N1853NaaTaaC11AY.420.00004
ORF1ab/nsp31853N1853YAatTat11AY.440.000006
ORF1ab/nsp31853N1853delAAT---11AY.46.20.000635
ORF1ab/nsp31853N1853NaaTaaC11AY.46.60.000072
ORF1ab/nsp31853N1853NaaTaaC11AY.50.000021
ORF1ab/nsp31853N1853delAAT---11AY.50.000021
ORF1ab/nsp31853N1853YAaTTaC11AY.550.000917
ORF1ab/nsp31853N1853NaaTaaC11AY.710.000475
ORF1ab/nsp31853N1853NaaTaaC11AY.750.000056
ORF1ab/nsp31853N1853NaaTaaC11AY.75.10.00018
ORF1ab/nsp31853N1853SaAtaGt11AY.75.10.00018
ORF1ab/nsp31853N1853delAAT---11AY.810.001992
ORF1ab/nsp31853N1853NaaTaaC11AY.850.000427
ORF1ab/nsp31853N1853delAAT---11AY.90.000068
ORF1ab/nsp31853N1853NaaTaaC11AY.9.10.000084
ORF1ab/nsp31853N1853NaaTaaC11AY.920.000287
ORF1ab/nsp31853N1853NaaTaaC11AY.980.000079
ORF1ab/nsp31853N1853NaaTaaC11AY.98.10.000048
ORF1ab/nsp31853N1853del1Aat-at11B.10.000009
ORF1ab/nsp31853N1853HAatCat11B.10.000009
ORF1ab/nsp31853N1853delAAT---11B.1.1.1590.004673
ORF1ab/nsp31853N1853YAatTat11B.1.1.1840.058824
ORF1ab/nsp31853N1853NaaTaaC11B.1.1.250.000569
ORF1ab/nsp31853N1853delAAT---11B.1.1.3060.000438
ORF1ab/nsp31853N1853del1Aat-at11B.1.1.3060.000438
ORF1ab/nsp31853N1853NaaTaaC11B.1.1.3180.000302
ORF1ab/nsp31853N1853NaaTaaC11B.1.1.3720.000689
ORF1ab/nsp31853N1853YAatTat11B.1.1.3720.000689
ORF1ab/nsp31853N1853CAAtTGt11B.1.1.70.000001
ORF1ab/nsp31853N1853RAAtCGt11B.1.1.70.000001
ORF1ab/nsp31853N1853NaaTaaC11B.1.1570.002985
ORF1ab/nsp31853N1853NaaTaaC11B.1.1600.000031
ORF1ab/nsp31853N1853YAatTat11B.1.1700.00431
ORF1ab/nsp31853N1853NaaTaaC11B.1.1770.000013
ORF1ab/nsp31853N1853HAatCat11B.1.1770.000013
ORF1ab/nsp31853N1853NaaTaaC11B.1.177.120.000152
ORF1ab/nsp31853N1853delAAT---11B.1.177.180.00116
ORF1ab/nsp31853N1853delAAT---11B.1.177.540.000606
ORF1ab/nsp31853N1853delAAT---11B.1.177.630.002703
ORF1ab/nsp31853N1853delAAT---11B.1.177.870.000728
ORF1ab/nsp31853N1853delAAT---11B.1.177.90.001332
ORF1ab/nsp31853N1853NaaTaaC11B.1.20.000009
ORF1ab/nsp31853N1853del1Aat-at11B.1.3260.007576
ORF1ab/nsp31853N1853NaaTaaC11B.1.3510.00003
ORF1ab/nsp31853N1853YAatTat11B.1.360.000146
ORF1ab/nsp31853N1853NaaTaaC11B.1.360.000146
ORF1ab/nsp31853N1853YAatTat11B.1.36.100.004785
ORF1ab/nsp31853N1853del1Aat-at11B.1.3820.008929
ORF1ab/nsp31853N1853YAatTat11B.1.4680.005714
ORF1ab/nsp31853N1853delAAT---11B.1.5160.001957
ORF1ab/nsp31853N1853NaaTaaC11B.1.5260.000024
ORF1ab/nsp31853N1853del1Aat-at11B.1.5820.000491
ORF1ab/nsp31853N1853del1Aat-at11B.1.5950.000261
ORF1ab/nsp31853N1853delAAT---11B.1.617.20.000004
ORF1ab/nsp31853N1853IaAtaTt11B.1.617.20.000004
ORF1ab/nsp31853N1853del1Aat-at11B.1.617.20.000004
ORF1ab/nsp31853N1853NaaTaaC11B.1.6210.000089
ORF1ab/nsp31853N1853NaaTaaC11C.140.004329
ORF1ab/nsp31853N1853NaaTaaC11C.170.055556
ORF1ab/nsp31853N1853delAAT---11C.170.055556
ORF1ab/nsp31853N1853IaATaTA11C.350.000774
ORF1ab/nsp31853N1853YAatTat11C.360.000911
ORF1ab/nsp31853N1853NaaTaaC11C.370.000116
ORF1ab/nsp31853N1853delAAT---11C.370.000116
ORF1ab/nsp31853N1853IaAtaTt11D.20.000075
ORF1ab/nsp31853N1853NaaTaaC11N.50.001767
ORF1ab/nsp31853N1853NaaTaaC11N.60.007092
ORF1ab/nsp31853N1853del2AAT--N11P.10.000016
ORF1ab/nsp31853N1853NaaTaaC11P.1.70.000319
ORF1ab/nsp31853N1853delAAT---11Q.10.000126
ORF1ab/nsp31853N1853YAatTat11S.10.00495