CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1845

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31845I1845VI2663VnonsynAtaGta39239218252-8254
ORF1ab/nsp31845I1845MI2663MnonsynatAatG32632618252-8254
ORF1ab/nsp31845I1845LI2663LnonsynAtaCta123770.6260168252-8254
ORF1ab/nsp31845I1845LI2663LnonsynAtaTta123450.3658548252-8254
ORF1ab/nsp31845I1845LI2663LnonsynAtACtT12310.008130088252-8254
ORF1ab/nsp31845I1845delI2663deldelATA---626218252-8254
ORF1ab/nsp31845I1845TI2663TnonsynaTaaCa20190.958252-8254
ORF1ab/nsp31845I1845TI2663TnonsynaTAaCC2010.058252-8254
ORF1ab/nsp31845I1845II2663IsynatAatT19140.7368428252-8254
ORF1ab/nsp31845I1845II2663IsynatAatC1950.2631588252-8254
ORF1ab/nsp31845I1845del1I2663del1delatAat-3318252-8254
ORF1ab/nsp31845I1845KI2663KnonsynaTaaAa3318252-8254
ORF1ab/nsp31845I1845del2I2663del2delATa--a320.6666678252-8254
ORF1ab/nsp31845I1845del2I2663del2delATA--N310.3333338252-8254
ORF1ab/nsp31845I1845FI2663FnonsynAtATtT2218252-8254
ORF1ab/nsp31845I1845NI2663NnonsynaTAaAT2218252-8254
ORF1ab/nsp31845I1845XI2663XnonsynATaTAa2218252-8254
ORF1ab/nsp31845I1845YI2663YnonsynATATAT2218252-8254
ORF1ab/nsp31845I1845QI2663QnonsynATaCAa1118252-8254
ORF1ab/nsp31845I1845HI2663HnonsynATACAT1118252-8254
ORF1ab/nsp31845I1845RI2663RnonsynaTaaGa1118252-8254

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31845I1845VAtaGta392392All0.000075
ORF1ab/nsp31845I1845MatAatG326326All0.000062
ORF1ab/nsp31845I1845MatAatG161161B.1.1.70.000144
ORF1ab/nsp31845I1845LAtaCta77123All0.000015
ORF1ab/nsp31845I1845LAtaTta45123All0.000009
ORF1ab/nsp31845I1845LAtACtT1123All0
ORF1ab/nsp31845I1845VAtaGta103103AY.250.00062
ORF1ab/nsp31845I1845VAtaGta7272AY.4.20.001562
ORF1ab/nsp31845I1845VAtaGta6868B.1.1.70.000061
ORF1ab/nsp31845I1845delATA---6262All0.000012
ORF1ab/nsp31845I1845LAtaCta5256B.1.1.70.000047
ORF1ab/nsp31845I1845LAtaTta456B.1.1.70.000004
ORF1ab/nsp31845I1845VAtaGta5252B.1.2670.962963
ORF1ab/nsp31845I1845MatAatG3838P.1.150.008829
ORF1ab/nsp31845I1845delATA---2222B.1.1.70.00002
ORF1ab/nsp31845I1845VAtaGta2121B.1.2340.002771
ORF1ab/nsp31845I1845TaTaaCa1920All0.000004
ORF1ab/nsp31845I1845TaTAaCC120All0
ORF1ab/nsp31845I1845IatAatT1419All0.000003
ORF1ab/nsp31845I1845IatAatC519All0.000001
ORF1ab/nsp31845I1845MatAatG1919AY.850.008116
ORF1ab/nsp31845I1845LAtaTta1316AY.40.00002
ORF1ab/nsp31845I1845LAtaCta316AY.40.000005
ORF1ab/nsp31845I1845MatAatG1616B.1.617.20.00006
ORF1ab/nsp31845I1845MatAatG1515AY.30.000149
ORF1ab/nsp31845I1845MatAatG1414B.1.177.770.010167
ORF1ab/nsp31845I1845VAtaGta1212B.1.1.2840.001289
ORF1ab/nsp31845I1845LAtaTta1010AY.1170.000845
ORF1ab/nsp31845I1845LAtaCta99B.1.4220.007311
ORF1ab/nsp31845I1845VAtaGta99B.1.617.20.000034
ORF1ab/nsp31845I1845MatAatG77AY.340.000679
ORF1ab/nsp31845I1845VAtaGta55AY.40.000008
ORF1ab/nsp31845I1845IatAatT55B.30.004153
ORF1ab/nsp31845I1845LAtaTta240.111111
ORF1ab/nsp31845I1845LAtACtT140.055556
ORF1ab/nsp31845I1845LAtaCta140.055556
ORF1ab/nsp31845I1845MatAatG44AY.1020.000106
ORF1ab/nsp31845I1845VAtaGta44AY.1180.000251
ORF1ab/nsp31845I1845LAtaCta44AY.290.000063
ORF1ab/nsp31845I1845MatAatG44AY.3.10.000341
ORF1ab/nsp31845I1845TaTaaCa44AY.40.000006
ORF1ab/nsp31845I1845KaTaaAa33All0.000001
ORF1ab/nsp31845I1845del1atAat-33All0.000001
ORF1ab/nsp31845I1845del2ATa--a23All0
ORF1ab/nsp31845I1845del2ATA--N13All0
ORF1ab/nsp31845I1845VAtaGta33AY.1030.000019
ORF1ab/nsp31845I1845LAtaTta33AY.1180.000188
ORF1ab/nsp31845I1845VAtaGta33AY.130.000483
ORF1ab/nsp31845I1845VAtaGta33AY.3.10.000256
ORF1ab/nsp31845I1845MatAatG33AY.390.000074
ORF1ab/nsp31845I1845delATA---33AY.40.000005
ORF1ab/nsp31845I1845delATA---33AY.4.50.000322
ORF1ab/nsp31845I1845VAtaGta33AY.410.000882
ORF1ab/nsp31845I1845MatAatG33AY.440.000018
ORF1ab/nsp31845I1845TaTaaCa33AY.440.000018
ORF1ab/nsp31845I1845delATA---33B.10.000027
ORF1ab/nsp31845I1845MatAatG33B.10.000027
ORF1ab/nsp31845I1845delATA---33B.1.10.000054
ORF1ab/nsp31845I1845IatAatT33B.1.1.70.000003
ORF1ab/nsp31845I1845VAtaGta33B.1.177.320.004049
ORF1ab/nsp31845I1845LAtaTta33B.1.20.000026
ORF1ab/nsp31845I1845delATA---33P.10.000047
ORF1ab/nsp31845I1845FAtATtT220.111111
ORF1ab/nsp31845I1845YATATAT220.111111
ORF1ab/nsp31845I1845NaTAaAT220.111111
ORF1ab/nsp31845I1845XATaTAa220.111111
ORF1ab/nsp31845I1845KaTaaAa220.111111
ORF1ab/nsp31845I1845IatAatT220.111111
ORF1ab/nsp31845I1845YATATAT22All0
ORF1ab/nsp31845I1845XATaTAa22All0
ORF1ab/nsp31845I1845NaTAaAT22All0
ORF1ab/nsp31845I1845FAtATtT22All0
ORF1ab/nsp31845I1845VAtaGta22AY.1000.000092
ORF1ab/nsp31845I1845VAtaGta22AY.1020.000053
ORF1ab/nsp31845I1845MatAatG22AY.1030.000012
ORF1ab/nsp31845I1845LAtaCta22AY.200.000078
ORF1ab/nsp31845I1845MatAatG22AY.250.000012
ORF1ab/nsp31845I1845delATA---22AY.250.000012
ORF1ab/nsp31845I1845IatAatC22AY.40.000003
ORF1ab/nsp31845I1845MatAatG22AY.40.000003
ORF1ab/nsp31845I1845delATA---22AY.430.000009
ORF1ab/nsp31845I1845VAtaGta22AY.440.000012
ORF1ab/nsp31845I1845VAtaGta22AY.46.60.000144
ORF1ab/nsp31845I1845MatAatG22AY.540.000191
ORF1ab/nsp31845I1845LAtaTta22AY.9.20.000073
ORF1ab/nsp31845I1845IatAatT22B.10.000018
ORF1ab/nsp31845I1845VAtaGta22B.10.000018
ORF1ab/nsp31845I1845MatAatG22B.1.1.5190.000079
ORF1ab/nsp31845I1845del2ATa--a22B.1.1.70.000002
ORF1ab/nsp31845I1845TaTaaCa22B.1.1.70.000002
ORF1ab/nsp31845I1845delATA---22B.1.177.160.001329
ORF1ab/nsp31845I1845VAtaGta22B.1.20.000018
ORF1ab/nsp31845I1845MatAatG22B.1.5950.000522
ORF1ab/nsp31845I1845VAtaGta22B.1.5950.000522
ORF1ab/nsp31845I1845TaTaaCa22B.1.617.20.000008
ORF1ab/nsp31845I1845LAtaCta12B.1.617.20.000004
ORF1ab/nsp31845I1845LAtaTta12B.1.617.20.000004
ORF1ab/nsp31845I1845VAtaGta22B.1.6190.001742
ORF1ab/nsp31845I1845MatAatG22N.50.003534
ORF1ab/nsp31845I1845MatAatG22P.10.000032
ORF1ab/nsp31845I1845MatAatG22P.1.140.000096
ORF1ab/nsp31845I1845HATACAT110.055556
ORF1ab/nsp31845I1845QATaCAa110.055556
ORF1ab/nsp31845I1845LAtaTta11A.2.40.003367
ORF1ab/nsp31845I1845HATACAT11All0
ORF1ab/nsp31845I1845QATaCAa11All0
ORF1ab/nsp31845I1845RaTaaGa11All0
ORF1ab/nsp31845I1845TaTaaCa11AY.1000.000046
ORF1ab/nsp31845I1845TaTaaCa11AY.1110.000183
ORF1ab/nsp31845I1845MatAatG11AY.1170.000085
ORF1ab/nsp31845I1845MatAatG11AY.1180.000063
ORF1ab/nsp31845I1845VAtaGta11AY.1190.000035
ORF1ab/nsp31845I1845MatAatG11AY.140.000088
ORF1ab/nsp31845I1845delATA---11AY.190.00114
ORF1ab/nsp31845I1845MatAatG11AY.200.000039
ORF1ab/nsp31845I1845VAtaGta11AY.200.000039
ORF1ab/nsp31845I1845MatAatG11AY.210.001898
ORF1ab/nsp31845I1845VAtaGta11AY.230.00007
ORF1ab/nsp31845I1845TaTaaCa11AY.250.000006
ORF1ab/nsp31845I1845TaTaaCa11AY.290.000016
ORF1ab/nsp31845I1845VAtaGta11AY.30.00001
ORF1ab/nsp31845I1845TaTaaCa11AY.30.00001
ORF1ab/nsp31845I1845LAtaTta11AY.30.00001
ORF1ab/nsp31845I1845LAtaTta11AY.39.10.00004
ORF1ab/nsp31845I1845IatAatT11AY.39.10.00004
ORF1ab/nsp31845I1845LAtaTta11AY.430.000004
ORF1ab/nsp31845I1845MatAatG11AY.430.000004
ORF1ab/nsp31845I1845VAtaGta11AY.430.000004
ORF1ab/nsp31845I1845IatAatC11AY.430.000004
ORF1ab/nsp31845I1845del1atAat-11AY.440.000006
ORF1ab/nsp31845I1845MatAatG11AY.450.000122
ORF1ab/nsp31845I1845LAtaCta11AY.460.000104
ORF1ab/nsp31845I1845VAtaGta11AY.460.000104
ORF1ab/nsp31845I1845delATA---11AY.46.20.000635
ORF1ab/nsp31845I1845delATA---11AY.520.000814
ORF1ab/nsp31845I1845delATA---11AY.60.000041
ORF1ab/nsp31845I1845TaTaaCa11AY.60.000041
ORF1ab/nsp31845I1845VAtaGta11AY.750.000056
ORF1ab/nsp31845I1845delATA---11AY.90.000068
ORF1ab/nsp31845I1845LAtaTta11AY.9.10.000084
ORF1ab/nsp31845I1845MatAatG11AY.9.10.000084
ORF1ab/nsp31845I1845MatAatG11AY.9.20.000037
ORF1ab/nsp31845I1845MatAatG11AY.99.20.000092
ORF1ab/nsp31845I1845LAtaCta11B.10.000009
ORF1ab/nsp31845I1845del2ATA--N11B.10.000009
ORF1ab/nsp31845I1845MatAatG11B.1.10.000018
ORF1ab/nsp31845I1845TaTaaCa11B.1.10.000018
ORF1ab/nsp31845I1845RaTaaGa11B.1.10.000018
ORF1ab/nsp31845I1845delATA---11B.1.1.1590.004673
ORF1ab/nsp31845I1845delATA---11B.1.1.3060.000438
ORF1ab/nsp31845I1845delATA---11B.1.1.3150.008475
ORF1ab/nsp31845I1845MatAatG11B.1.1.3180.000302
ORF1ab/nsp31845I1845del1atAat-11B.1.1.70.000001
ORF1ab/nsp31845I1845TaTaaCa11B.1.110.30.000718
ORF1ab/nsp31845I1845IatAatT11B.1.1470.000756
ORF1ab/nsp31845I1845VAtaGta11B.1.1770.000013
ORF1ab/nsp31845I1845IatAatC11B.1.1770.000013
ORF1ab/nsp31845I1845LAtaTta11B.1.1770.000013
ORF1ab/nsp31845I1845delATA---11B.1.1770.000013
ORF1ab/nsp31845I1845delATA---11B.1.177.180.00116
ORF1ab/nsp31845I1845MatAatG11B.1.177.320.00135
ORF1ab/nsp31845I1845delATA---11B.1.177.540.000606
ORF1ab/nsp31845I1845del1atAat-11B.1.177.630.002703
ORF1ab/nsp31845I1845MatAatG11B.1.177.820.000477
ORF1ab/nsp31845I1845VAtaGta11B.1.177.820.000477
ORF1ab/nsp31845I1845delATA---11B.1.177.870.000728
ORF1ab/nsp31845I1845TaTAaCC11B.1.20.000009
ORF1ab/nsp31845I1845MatAatG11B.1.2100.002132
ORF1ab/nsp31845I1845LAtaTta11B.1.2400.000216
ORF1ab/nsp31845I1845MatAatG11B.1.2580.000067
ORF1ab/nsp31845I1845delATA---11B.1.258.100.011364
ORF1ab/nsp31845I1845LAtaCta11B.1.2670.018519
ORF1ab/nsp31845I1845MatAatG11B.1.360.000146
ORF1ab/nsp31845I1845VAtaGta11B.1.360.000146
ORF1ab/nsp31845I1845MatAatG11B.1.36.260.002857
ORF1ab/nsp31845I1845MatAatG11B.1.4920.007042
ORF1ab/nsp31845I1845VAtaGta11B.1.5250.000113
ORF1ab/nsp31845I1845VAtaGta11B.1.5260.000024
ORF1ab/nsp31845I1845VAtaGta11B.1.5400.009709
ORF1ab/nsp31845I1845IatAatC11B.1.617.20.000004
ORF1ab/nsp31845I1845KaTaaAa11B.1.617.20.000004
ORF1ab/nsp31845I1845delATA---11B.1.617.20.000004
ORF1ab/nsp31845I1845delATA---11B.1.6380.052632
ORF1ab/nsp31845I1845VAtaGta11B.390.002331
ORF1ab/nsp31845I1845LAtaCta11B.400.000364
ORF1ab/nsp31845I1845LAtaCta11B.60.00091
ORF1ab/nsp31845I1845delATA---11C.170.055556
ORF1ab/nsp31845I1845MatAatG11C.370.000116
ORF1ab/nsp31845I1845delATA---11C.370.000116
ORF1ab/nsp31845I1845VAtaGta11P.10.000016
ORF1ab/nsp31845I1845MatAatG11P.1.120.000484
ORF1ab/nsp31845I1845delATA---11Q.10.000126
ORF1ab/nsp31845I1845delATA---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.