CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1845 | I1845V | I2663V | nonsyn | Ata | Gta | 392 | 392 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845M | I2663M | nonsyn | atA | atG | 326 | 326 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845L | I2663L | nonsyn | Ata | Cta | 123 | 77 | 0.626016 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845L | I2663L | nonsyn | Ata | Tta | 123 | 45 | 0.365854 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845L | I2663L | nonsyn | AtA | CtT | 123 | 1 | 0.00813008 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845del | I2663del | del | ATA | --- | 62 | 62 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845T | I2663T | nonsyn | aTa | aCa | 20 | 19 | 0.95 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845T | I2663T | nonsyn | aTA | aCC | 20 | 1 | 0.05 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845I | I2663I | syn | atA | atT | 19 | 14 | 0.736842 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845I | I2663I | syn | atA | atC | 19 | 5 | 0.263158 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845del1 | I2663del1 | del | atA | at- | 3 | 3 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845K | I2663K | nonsyn | aTa | aAa | 3 | 3 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845del2 | I2663del2 | del | ATa | --a | 3 | 2 | 0.666667 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845del2 | I2663del2 | del | ATA | --N | 3 | 1 | 0.333333 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845F | I2663F | nonsyn | AtA | TtT | 2 | 2 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845N | I2663N | nonsyn | aTA | aAT | 2 | 2 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845X | I2663X | nonsyn | ATa | TAa | 2 | 2 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845Y | I2663Y | nonsyn | ATA | TAT | 2 | 2 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845Q | I2663Q | nonsyn | ATa | CAa | 1 | 1 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845H | I2663H | nonsyn | ATA | CAT | 1 | 1 | 1 | 8252-8254 |
ORF1ab/nsp3 | 1845 | I1845R | I2663R | nonsyn | aTa | aGa | 1 | 1 | 1 | 8252-8254 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 392 | 392 | All | 0.000075 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 326 | 326 | All | 0.000062 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 161 | 161 | B.1.1.7 | 0.000144 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 77 | 123 | All | 0.000015 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 45 | 123 | All | 0.000009 |
ORF1ab/nsp3 | 1845 | I1845L | AtA | CtT | 1 | 123 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 103 | 103 | AY.25 | 0.00062 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 72 | 72 | AY.4.2 | 0.001562 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 68 | 68 | B.1.1.7 | 0.000061 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 62 | 62 | All | 0.000012 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 52 | 56 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 4 | 56 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 52 | 52 | B.1.267 | 0.962963 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 38 | 38 | P.1.15 | 0.008829 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 21 | 21 | B.1.234 | 0.002771 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 19 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845T | aTA | aCC | 1 | 20 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 14 | 19 | All | 0.000003 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atC | 5 | 19 | All | 0.000001 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 19 | 19 | AY.85 | 0.008116 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 13 | 16 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 3 | 16 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 14 | 14 | B.1.177.77 | 0.010167 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 12 | 12 | B.1.1.284 | 0.001289 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 9 | 9 | B.1.422 | 0.007311 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 5 | 5 | B.3 | 0.004153 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845L | AtA | CtT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1845 | I1845K | aTa | aAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1845 | I1845del1 | atA | at- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1845 | I1845del2 | ATa | --a | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845del2 | ATA | --N | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1845 | I1845F | AtA | TtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845Y | ATA | TAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845N | aTA | aAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845X | ATa | TAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845K | aTa | aAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1845 | I1845Y | ATA | TAT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845X | ATa | TAa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845N | aTA | aAT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845F | AtA | TtT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atC | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1845 | I1845del2 | ATa | --a | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1845 | I1845H | ATA | CAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1845 | I1845Q | ATa | CAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1845 | I1845H | ATA | CAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845Q | ATa | CAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845R | aTa | aGa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845del1 | atA | at- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1845 | I1845del2 | ATA | --N | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845R | aTa | aGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1845 | I1845del1 | atA | at- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1845 | I1845T | aTa | aCa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1845 | I1845del1 | atA | at- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1845 | I1845T | aTA | aCC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Tta | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1845 | I1845I | atA | atC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845K | aTa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1845 | I1845L | Ata | Cta | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1845 | I1845V | Ata | Gta | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1845 | I1845M | atA | atG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1845 | I1845del | ATA | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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