CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1842

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31842Q1842HQ2660HnonsyncaAcaT4053400.8395068243-8245
ORF1ab/nsp31842Q1842HQ2660HnonsyncaAcaC405650.1604948243-8245
ORF1ab/nsp31842Q1842RQ2660RnonsyncAacGa16416418243-8245
ORF1ab/nsp31842Q1842QQ2660QsyncaAcaG10310318243-8245
ORF1ab/nsp31842Q1842delQ2660deldelCAA---606018243-8245
ORF1ab/nsp31842Q1842XQ2660XnonsynCaaTaa606018243-8245
ORF1ab/nsp31842Q1842KQ2660KnonsynCaaAaa42410.976198243-8245
ORF1ab/nsp31842Q1842KQ2660KnonsynCaAAaG4210.02380958243-8245
ORF1ab/nsp31842Q1842LQ2660LnonsyncAacTa28220.7857148243-8245
ORF1ab/nsp31842Q1842LQ2660LnonsynCAaTTa2830.1071438243-8245
ORF1ab/nsp31842Q1842LQ2660LnonsyncAAcTT2830.1071438243-8245
ORF1ab/nsp31842Q1842del1Q2660del1delCaa-aa540.88243-8245
ORF1ab/nsp31842Q1842del1Q2660del1delcAac-a510.28243-8245
ORF1ab/nsp31842Q1842PQ2660PnonsyncAacCa430.758243-8245
ORF1ab/nsp31842Q1842PQ2660PnonsyncAAcCT410.258243-8245
ORF1ab/nsp31842Q1842SQ2660SnonsynCAaTCa320.6666678243-8245
ORF1ab/nsp31842Q1842IQ2660InonsynCAaATa320.6666678243-8245
ORF1ab/nsp31842Q1842IQ2660InonsynCAAATT310.3333338243-8245
ORF1ab/nsp31842Q1842SQ2660SnonsynCAATCT310.3333338243-8245
ORF1ab/nsp31842Q1842FQ2660FnonsynCAATTT2218243-8245
ORF1ab/nsp31842Q1842YQ2660YnonsynCaATaT2218243-8245
ORF1ab/nsp31842Q1842EQ2660EnonsynCaaGaa2218243-8245
ORF1ab/nsp31842Q1842TQ2660TnonsynCAAACT210.58243-8245
ORF1ab/nsp31842Q1842TQ2660TnonsynCAaACa210.58243-8245
ORF1ab/nsp31842Q1842NQ2660NnonsynCaAAaT1118243-8245

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31842Q1842HcaAcaT340405All0.000065
ORF1ab/nsp31842Q1842HcaAcaC65405All0.000012
ORF1ab/nsp31842Q1842HcaAcaT328331AY.40.000511
ORF1ab/nsp31842Q1842HcaAcaC3331AY.40.000005
ORF1ab/nsp31842Q1842RcAacGa164164All0.000031
ORF1ab/nsp31842Q1842QcaAcaG103103All0.00002
ORF1ab/nsp31842Q1842RcAacGa7575B.1.1.2180.576923
ORF1ab/nsp31842Q1842XCaaTaa6060All0.000011
ORF1ab/nsp31842Q1842delCAA---6060All0.000011
ORF1ab/nsp31842Q1842KCaaAaa4142All0.000008
ORF1ab/nsp31842Q1842KCaAAaG142All0
ORF1ab/nsp31842Q1842HcaAcaC3030B.1.1.70.000027
ORF1ab/nsp31842Q1842LcAacTa2228All0.000004
ORF1ab/nsp31842Q1842LcAAcTT328All0.000001
ORF1ab/nsp31842Q1842LCAaTTa328All0.000001
ORF1ab/nsp31842Q1842QcaAcaG2424B.1.617.20.00009
ORF1ab/nsp31842Q1842RcAacGa2020B.1.1.70.000018
ORF1ab/nsp31842Q1842delCAA---1919B.1.1.70.000017
ORF1ab/nsp31842Q1842QcaAcaG1616AY.40.000025
ORF1ab/nsp31842Q1842KCaaAaa1313B.1.10.000236
ORF1ab/nsp31842Q1842HcaAcaC1112AY.1030.000068
ORF1ab/nsp31842Q1842HcaAcaT112AY.1030.000006
ORF1ab/nsp31842Q1842XCaaTaa99B.1.1.70.000008
ORF1ab/nsp31842Q1842KCaaAaa99B.1.1.70.000008
ORF1ab/nsp31842Q1842RcAacGa99B.1.617.20.000034
ORF1ab/nsp31842Q1842LcAacTa380.166667
ORF1ab/nsp31842Q1842LCAaTTa380.166667
ORF1ab/nsp31842Q1842LcAAcTT280.111111
ORF1ab/nsp31842Q1842RcAacGa88AY.1030.00005
ORF1ab/nsp31842Q1842QcaAcaG88AY.30.00008
ORF1ab/nsp31842Q1842XCaaTaa88B.10.000073
ORF1ab/nsp31842Q1842QcaAcaG88B.1.1.70.000007
ORF1ab/nsp31842Q1842HcaAcaC88C.360.007286
ORF1ab/nsp31842Q1842XCaaTaa77AY.40.000011
ORF1ab/nsp31842Q1842HcaAcaC47B.1.617.20.000015
ORF1ab/nsp31842Q1842HcaAcaT37B.1.617.20.000011
ORF1ab/nsp31842Q1842RcAacGa66AY.1200.000223
ORF1ab/nsp31842Q1842KCaaAaa66B.10.000055
ORF1ab/nsp31842Q1842XCaaTaa550.277778
ORF1ab/nsp31842Q1842del1Caa-aa45All0.000001
ORF1ab/nsp31842Q1842del1cAac-a15All0
ORF1ab/nsp31842Q1842LcAacTa55AY.40.000008
ORF1ab/nsp31842Q1842RcAacGa55AY.430.000022
ORF1ab/nsp31842Q1842QcaAcaG55B.1.20.000044
ORF1ab/nsp31842Q1842QcaAcaG55B.1.5820.002453
ORF1ab/nsp31842Q1842PcAacCa34All0.000001
ORF1ab/nsp31842Q1842PcAAcCT14All0
ORF1ab/nsp31842Q1842QcaAcaG44AY.1170.000338
ORF1ab/nsp31842Q1842RcAacGa44AY.200.000155
ORF1ab/nsp31842Q1842LcAacTa44AY.430.000018
ORF1ab/nsp31842Q1842RcAacGa44B.10.000037
ORF1ab/nsp31842Q1842delCAA---44B.10.000037
ORF1ab/nsp31842Q1842RcAacGa44B.1.1.4640.005891
ORF1ab/nsp31842Q1842PcAacCa230.111111
ORF1ab/nsp31842Q1842SCAaTCa230.111111
ORF1ab/nsp31842Q1842SCAATCT130.055556
ORF1ab/nsp31842Q1842PcAAcCT130.055556
ORF1ab/nsp31842Q1842ICAaATa23All0
ORF1ab/nsp31842Q1842SCAaTCa23All0
ORF1ab/nsp31842Q1842ICAAATT13All0
ORF1ab/nsp31842Q1842SCAATCT13All0
ORF1ab/nsp31842Q1842delCAA---33AY.40.000005
ORF1ab/nsp31842Q1842delCAA---33AY.4.50.000322
ORF1ab/nsp31842Q1842QcaAcaG33AY.930.000819
ORF1ab/nsp31842Q1842RcAacGa33B.1.10.000054
ORF1ab/nsp31842Q1842XCaaTaa33B.1.1770.00004
ORF1ab/nsp31842Q1842KCaaAaa33B.1.3510.000089
ORF1ab/nsp31842Q1842RcAacGa33B.1.36.290.001552
ORF1ab/nsp31842Q1842QcaAcaG33B.1.5260.000071
ORF1ab/nsp31842Q1842delCAA---33P.10.000047
ORF1ab/nsp31842Q1842YCaATaT220.111111
ORF1ab/nsp31842Q1842HcaAcaT220.111111
ORF1ab/nsp31842Q1842FCAATTT220.111111
ORF1ab/nsp31842Q1842TCAaACa120.055556
ORF1ab/nsp31842Q1842ICAaATa120.055556
ORF1ab/nsp31842Q1842TCAAACT120.055556
ORF1ab/nsp31842Q1842ICAAATT120.055556
ORF1ab/nsp31842Q1842YCaATaT22All0
ORF1ab/nsp31842Q1842FCAATTT22All0
ORF1ab/nsp31842Q1842ECaaGaa22All0
ORF1ab/nsp31842Q1842TCAAACT12All0
ORF1ab/nsp31842Q1842TCAaACa12All0
ORF1ab/nsp31842Q1842LcAacTa22AY.1000.000092
ORF1ab/nsp31842Q1842ECaaGaa22AY.1030.000012
ORF1ab/nsp31842Q1842QcaAcaG22AY.1180.000125
ORF1ab/nsp31842Q1842delCAA---22AY.250.000012
ORF1ab/nsp31842Q1842LcAacTa22AY.250.000012
ORF1ab/nsp31842Q1842RcAacGa22AY.360.000296
ORF1ab/nsp31842Q1842QcaAcaG22AY.39.10.000079
ORF1ab/nsp31842Q1842delCAA---22AY.430.000009
ORF1ab/nsp31842Q1842HcaAcaT12AY.430.000004
ORF1ab/nsp31842Q1842HcaAcaC12AY.430.000004
ORF1ab/nsp31842Q1842delCAA---22B.1.10.000036
ORF1ab/nsp31842Q1842KCaaAaa22B.1.1.1450.074074
ORF1ab/nsp31842Q1842LcAacTa22B.1.1.70.000002
ORF1ab/nsp31842Q1842delCAA---22B.1.177.160.001329
ORF1ab/nsp31842Q1842QcaAcaG22B.1.177.680.030303
ORF1ab/nsp31842Q1842RcAacGa22B.1.177.810.000379
ORF1ab/nsp31842Q1842RcAacGa22B.1.4290.000047
ORF1ab/nsp31842Q1842delCAA---22B.1.5960.000174
ORF1ab/nsp31842Q1842KCaaAaa110.055556
ORF1ab/nsp31842Q1842NCaAAaT110.055556
ORF1ab/nsp31842Q1842QcaAcaG11A0.000387
ORF1ab/nsp31842Q1842QcaAcaG11A.2.5.30.010309
ORF1ab/nsp31842Q1842HcaAcaT11AD.20.000219
ORF1ab/nsp31842Q1842XCaaTaa11AD.20.000219
ORF1ab/nsp31842Q1842NCaAAaT11All0
ORF1ab/nsp31842Q1842XCaaTaa11AP.10.001502
ORF1ab/nsp31842Q1842HcaAcaC11AY.1000.000046
ORF1ab/nsp31842Q1842XCaaTaa11AY.1030.000006
ORF1ab/nsp31842Q1842RcAacGa11AY.1180.000063
ORF1ab/nsp31842Q1842QcaAcaG11AY.1200.000037
ORF1ab/nsp31842Q1842QcaAcaG11AY.190.00114
ORF1ab/nsp31842Q1842delCAA---11AY.190.00114
ORF1ab/nsp31842Q1842QcaAcaG11AY.20.000356
ORF1ab/nsp31842Q1842HcaAcaT11AY.200.000039
ORF1ab/nsp31842Q1842QcaAcaG11AY.200.000039
ORF1ab/nsp31842Q1842QcaAcaG11AY.230.00007
ORF1ab/nsp31842Q1842QcaAcaG11AY.250.000006
ORF1ab/nsp31842Q1842KCaaAaa11AY.250.000006
ORF1ab/nsp31842Q1842XCaaTaa11AY.260.000028
ORF1ab/nsp31842Q1842RcAacGa11AY.30.00001
ORF1ab/nsp31842Q1842RcAacGa11AY.330.000067
ORF1ab/nsp31842Q1842LcAacTa11AY.370.000316
ORF1ab/nsp31842Q1842LcAacTa11AY.390.000025
ORF1ab/nsp31842Q1842QcaAcaG11AY.39.20.001541
ORF1ab/nsp31842Q1842del1Caa-aa11AY.40.000002
ORF1ab/nsp31842Q1842KCaaAaa11AY.40.000002
ORF1ab/nsp31842Q1842HcaAcaT11AY.4.20.000022
ORF1ab/nsp31842Q1842HcaAcaT11AY.420.00004
ORF1ab/nsp31842Q1842XCaaTaa11AY.420.00004
ORF1ab/nsp31842Q1842RcAacGa11AY.420.00004
ORF1ab/nsp31842Q1842XCaaTaa11AY.430.000004
ORF1ab/nsp31842Q1842KCaAAaG11AY.430.000004
ORF1ab/nsp31842Q1842XCaaTaa11AY.440.000006
ORF1ab/nsp31842Q1842LcAacTa11AY.440.000006
ORF1ab/nsp31842Q1842HcaAcaC11AY.440.000006
ORF1ab/nsp31842Q1842del1Caa-aa11AY.440.000006
ORF1ab/nsp31842Q1842QcaAcaG11AY.440.000006
ORF1ab/nsp31842Q1842KCaaAaa11AY.440.000006
ORF1ab/nsp31842Q1842RcAacGa11AY.450.000122
ORF1ab/nsp31842Q1842QcaAcaG11AY.460.000104
ORF1ab/nsp31842Q1842KCaaAaa11AY.460.000104
ORF1ab/nsp31842Q1842delCAA---11AY.46.20.000635
ORF1ab/nsp31842Q1842delCAA---11AY.50.000021
ORF1ab/nsp31842Q1842delCAA---11AY.520.000814
ORF1ab/nsp31842Q1842HcaAcaC11AY.550.000917
ORF1ab/nsp31842Q1842QcaAcaG11AY.550.000917
ORF1ab/nsp31842Q1842delCAA---11AY.60.000041
ORF1ab/nsp31842Q1842XCaaTaa11AY.680.000274
ORF1ab/nsp31842Q1842RcAacGa11AY.7.10.000113
ORF1ab/nsp31842Q1842RcAacGa11AY.710.000475
ORF1ab/nsp31842Q1842XCaaTaa11AY.930.000273
ORF1ab/nsp31842Q1842RcAacGa11AY.98.10.000048
ORF1ab/nsp31842Q1842RcAacGa11AY.990.001049
ORF1ab/nsp31842Q1842QcaAcaG11B0.000128
ORF1ab/nsp31842Q1842XCaaTaa11B0.000128
ORF1ab/nsp31842Q1842QcaAcaG11B.10.000009
ORF1ab/nsp31842Q1842HcaAcaC11B.10.000009
ORF1ab/nsp31842Q1842XCaaTaa11B.1.10.000018
ORF1ab/nsp31842Q1842delCAA---11B.1.1.1590.004673
ORF1ab/nsp31842Q1842delCAA---11B.1.1.3060.000438
ORF1ab/nsp31842Q1842delCAA---11B.1.1.3150.008475
ORF1ab/nsp31842Q1842QcaAcaG11B.1.1.370.000193
ORF1ab/nsp31842Q1842XCaaTaa11B.1.1.3720.000689
ORF1ab/nsp31842Q1842XCaaTaa11B.1.1.4160.000905
ORF1ab/nsp31842Q1842XCaaTaa11B.1.1.4320.001266
ORF1ab/nsp31842Q1842HcaAcaC11B.1.1.4660.008696
ORF1ab/nsp31842Q1842KCaaAaa11B.1.1.470.005348
ORF1ab/nsp31842Q1842QcaAcaG11B.1.1.500.000679
ORF1ab/nsp31842Q1842HcaAcaC11B.1.1.630.000386
ORF1ab/nsp31842Q1842PcAacCa11B.1.1.70.000001
ORF1ab/nsp31842Q1842del1Caa-aa11B.1.1.70.000001
ORF1ab/nsp31842Q1842ICAaATa11B.1.1.70.000001
ORF1ab/nsp31842Q1842RcAacGa11B.1.1.700.000341
ORF1ab/nsp31842Q1842XCaaTaa11B.1.160.160.000929
ORF1ab/nsp31842Q1842delCAA---11B.1.1770.000013
ORF1ab/nsp31842Q1842delCAA---11B.1.177.180.00116
ORF1ab/nsp31842Q1842XCaaTaa11B.1.177.440.000519
ORF1ab/nsp31842Q1842delCAA---11B.1.177.540.000606
ORF1ab/nsp31842Q1842XCaaTaa11B.1.177.810.000189
ORF1ab/nsp31842Q1842KCaaAaa11B.1.20.000009
ORF1ab/nsp31842Q1842XCaaTaa11B.1.20.000009
ORF1ab/nsp31842Q1842XCaaTaa11B.1.2060.000816
ORF1ab/nsp31842Q1842XCaaTaa11B.1.2210.000071
ORF1ab/nsp31842Q1842QcaAcaG11B.1.2340.000132
ORF1ab/nsp31842Q1842HcaAcaC11B.1.2430.00007
ORF1ab/nsp31842Q1842delCAA---11B.1.258.100.011364
ORF1ab/nsp31842Q1842XCaaTaa11B.1.258.140.00098
ORF1ab/nsp31842Q1842RcAacGa11B.1.2600.003344
ORF1ab/nsp31842Q1842del1cAac-a11B.1.2650.001271
ORF1ab/nsp31842Q1842RcAacGa11B.1.360.000146
ORF1ab/nsp31842Q1842delCAA---11B.1.36.220.001208
ORF1ab/nsp31842Q1842HcaAcaC11B.1.4160.001269
ORF1ab/nsp31842Q1842RcAacGa11B.1.4250.002994
ORF1ab/nsp31842Q1842XCaaTaa11B.1.4270.00005
ORF1ab/nsp31842Q1842QcaAcaG11B.1.4270.00005
ORF1ab/nsp31842Q1842QcaAcaG11B.1.4290.000024
ORF1ab/nsp31842Q1842XCaaTaa11B.1.5270.003704
ORF1ab/nsp31842Q1842XCaaTaa11B.1.5820.000491
ORF1ab/nsp31842Q1842QcaAcaG11B.1.5960.000087
ORF1ab/nsp31842Q1842XCaaTaa11B.1.5960.000087
ORF1ab/nsp31842Q1842RcAacGa11B.1.617.10.000129
ORF1ab/nsp31842Q1842XCaaTaa11B.1.617.10.000129
ORF1ab/nsp31842Q1842LcAAcTT11B.1.617.20.000004
ORF1ab/nsp31842Q1842XCaaTaa11B.1.617.20.000004
ORF1ab/nsp31842Q1842delCAA---11B.1.6380.052632
ORF1ab/nsp31842Q1842RcAacGa11B.400.000364
ORF1ab/nsp31842Q1842QcaAcaG11B.400.000364
ORF1ab/nsp31842Q1842LcAacTa11B.6.10.026316
ORF1ab/nsp31842Q1842delCAA---11C.170.055556
ORF1ab/nsp31842Q1842delCAA---11C.370.000116
ORF1ab/nsp31842Q1842RcAacGa11C.37.10.002618
ORF1ab/nsp31842Q1842XCaaTaa11D.20.000075
ORF1ab/nsp31842Q1842del1Caa-aa11D.20.000075
ORF1ab/nsp31842Q1842HcaAcaT11P.10.000016
ORF1ab/nsp31842Q1842RcAacGa11P.1.120.000484
ORF1ab/nsp31842Q1842KCaaAaa11P.1.150.000232
ORF1ab/nsp31842Q1842delCAA---11Q.10.000126
ORF1ab/nsp31842Q1842delCAA---11U.30.003861