CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1842 | Q1842H | Q2660H | nonsyn | caA | caT | 405 | 340 | 0.839506 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842H | Q2660H | nonsyn | caA | caC | 405 | 65 | 0.160494 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842R | Q2660R | nonsyn | cAa | cGa | 164 | 164 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842Q | Q2660Q | syn | caA | caG | 103 | 103 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842del | Q2660del | del | CAA | --- | 60 | 60 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842X | Q2660X | nonsyn | Caa | Taa | 60 | 60 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842K | Q2660K | nonsyn | Caa | Aaa | 42 | 41 | 0.97619 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842K | Q2660K | nonsyn | CaA | AaG | 42 | 1 | 0.0238095 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842L | Q2660L | nonsyn | cAa | cTa | 28 | 22 | 0.785714 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842L | Q2660L | nonsyn | CAa | TTa | 28 | 3 | 0.107143 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842L | Q2660L | nonsyn | cAA | cTT | 28 | 3 | 0.107143 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842del1 | Q2660del1 | del | Caa | -aa | 5 | 4 | 0.8 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842del1 | Q2660del1 | del | cAa | c-a | 5 | 1 | 0.2 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842P | Q2660P | nonsyn | cAa | cCa | 4 | 3 | 0.75 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842P | Q2660P | nonsyn | cAA | cCT | 4 | 1 | 0.25 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842S | Q2660S | nonsyn | CAa | TCa | 3 | 2 | 0.666667 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842I | Q2660I | nonsyn | CAa | ATa | 3 | 2 | 0.666667 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842I | Q2660I | nonsyn | CAA | ATT | 3 | 1 | 0.333333 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842S | Q2660S | nonsyn | CAA | TCT | 3 | 1 | 0.333333 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842F | Q2660F | nonsyn | CAA | TTT | 2 | 2 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842Y | Q2660Y | nonsyn | CaA | TaT | 2 | 2 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842E | Q2660E | nonsyn | Caa | Gaa | 2 | 2 | 1 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842T | Q2660T | nonsyn | CAA | ACT | 2 | 1 | 0.5 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842T | Q2660T | nonsyn | CAa | ACa | 2 | 1 | 0.5 | 8243-8245 |
ORF1ab/nsp3 | 1842 | Q1842N | Q2660N | nonsyn | CaA | AaT | 1 | 1 | 1 | 8243-8245 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 340 | 405 | All | 0.000065 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 65 | 405 | All | 0.000012 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 328 | 331 | AY.4 | 0.000511 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 3 | 331 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 164 | 164 | All | 0.000031 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 103 | 103 | All | 0.00002 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 75 | 75 | B.1.1.218 | 0.576923 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 60 | 60 | All | 0.000011 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 60 | 60 | All | 0.000011 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 41 | 42 | All | 0.000008 |
ORF1ab/nsp3 | 1842 | Q1842K | CaA | AaG | 1 | 42 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 22 | 28 | All | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842L | cAA | cTT | 3 | 28 | All | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842L | CAa | TTa | 3 | 28 | All | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 11 | 12 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 12 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 3 | 8 | 0.166667 | |
ORF1ab/nsp3 | 1842 | Q1842L | CAa | TTa | 3 | 8 | 0.166667 | |
ORF1ab/nsp3 | 1842 | Q1842L | cAA | cTT | 2 | 8 | 0.111111 | |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 8 | 8 | C.36 | 0.007286 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 4 | 7 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 3 | 7 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 5 | 5 | 0.277778 | |
ORF1ab/nsp3 | 1842 | Q1842del1 | Caa | -aa | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842del1 | cAa | c-a | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp3 | 1842 | Q1842P | cAa | cCa | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842P | cAA | cCT | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp3 | 1842 | Q1842P | cAa | cCa | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 1842 | Q1842S | CAa | TCa | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 1842 | Q1842S | CAA | TCT | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842P | cAA | cCT | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842I | CAa | ATa | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842S | CAa | TCa | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842I | CAA | ATT | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842S | CAA | TCT | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1842 | Q1842Y | CaA | TaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1842 | Q1842F | CAA | TTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1842 | Q1842T | CAa | ACa | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842I | CAa | ATa | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842T | CAA | ACT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842I | CAA | ATT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842Y | CaA | TaT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842F | CAA | TTT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842E | Caa | Gaa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842T | CAA | ACT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842T | CAa | ACa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1842 | Q1842E | Caa | Gaa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 2 | 2 | B.1.1.145 | 0.074074 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 2 | 2 | B.1.177.68 | 0.030303 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842N | CaA | AaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1842 | Q1842N | CaA | AaT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1842 | Q1842del1 | Caa | -aa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842K | CaA | AaG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842del1 | Caa | -aa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1842 | Q1842P | cAa | cCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842del1 | Caa | -aa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842I | CAa | ATa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1842 | Q1842del1 | cAa | c-a | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1842 | Q1842L | cAA | cTT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1842 | Q1842Q | caA | caG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1842 | Q1842L | cAa | cTa | 1 | 1 | B.6.1 | 0.026316 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1842 | Q1842X | Caa | Taa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1842 | Q1842del1 | Caa | -aa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1842 | Q1842H | caA | caT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1842 | Q1842R | cAa | cGa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1842 | Q1842K | Caa | Aaa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1842 | Q1842del | CAA | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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