CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1830 | T1830I | T2648I | nonsyn | aCt | aTt | 12917 | 12916 | 0.999923 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830I | T2648I | nonsyn | aCT | aTA | 12917 | 1 | 0.0000774174 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830T | T2648T | syn | acT | acC | 232 | 217 | 0.935345 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830T | T2648T | syn | acT | acA | 232 | 14 | 0.0603448 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830T | T2648T | syn | acT | acG | 232 | 1 | 0.00431034 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830A | T2648A | nonsyn | Act | Gct | 95 | 95 | 1 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830del | T2648del | del | ACT | --- | 66 | 66 | 1 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830N | T2648N | nonsyn | aCt | aAt | 58 | 58 | 1 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830del1 | T2648del1 | del | aCt | a-t | 3 | 2 | 0.666667 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830S | T2648S | nonsyn | Act | Tct | 3 | 2 | 0.666667 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830S | T2648S | nonsyn | aCt | aGt | 3 | 1 | 0.333333 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830del1 | T2648del1 | del | acT | ac- | 3 | 1 | 0.333333 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830P | T2648P | nonsyn | Act | Cct | 2 | 2 | 1 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830V | T2648V | nonsyn | ACt | GTt | 1 | 1 | 1 | 8207-8209 |
ORF1ab/nsp3 | 1830 | T1830K | T2648K | nonsyn | aCT | aAA | 1 | 1 | 1 | 8207-8209 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 12916 | 12917 | All | 0.00247 |
ORF1ab/nsp3 | 1830 | T1830I | aCT | aTA | 1 | 12917 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2713 | 2713 | AY.68 | 0.742677 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2240 | 2240 | B.1.1.176 | 0.984183 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2032 | 2032 | B.1.1.7 | 0.001819 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1723 | 1723 | AY.4 | 0.002682 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 927 | 927 | B.1.1.333 | 0.997847 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 366 | 366 | B.1.617.2 | 0.001378 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 331 | 331 | B.1.617.3 | 0.98806 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 272 | 272 | AY.43 | 0.001205 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 217 | 232 | All | 0.000042 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 14 | 232 | All | 0.000003 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acG | 1 | 232 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 209 | 209 | B.1 | 0.001914 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 163 | 163 | AY.44 | 0.000992 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 109 | 109 | P.1 | 0.001717 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 105 | 105 | B.1.2 | 0.000925 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 103 | 103 | AY.103 | 0.00064 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 95 | 95 | All | 0.000018 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 73 | 73 | AY.4.2 | 0.001583 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 71 | 71 | AY.20 | 0.002759 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 66 | 66 | All | 0.000013 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 58 | 58 | All | 0.000011 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 56 | 56 | B.1.429 | 0.001318 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 55 | 55 | AY.25 | 0.000331 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 53 | 53 | B.1.177 | 0.000698 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 52 | 52 | AY.3 | 0.000517 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 50 | 50 | B.1.369 | 0.014261 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 48 | 48 | B.1.1 | 0.000871 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 48 | 48 | B.1.160 | 0.001497 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 37 | 37 | AY.119 | 0.001306 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 37 | 37 | B.1.243 | 0.002575 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 36 | 36 | AY.39 | 0.00089 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 35 | 35 | B.1.1.519 | 0.00139 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 34 | 34 | AY.5 | 0.000702 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 34 | 34 | B.1.351 | 0.001011 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 31 | 31 | AY.44 | 0.000189 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 30 | 30 | AY.29 | 0.000473 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 30 | 30 | B.1.526 | 0.000705 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 29 | 29 | AY.120 | 0.001078 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 28 | 29 | B.1.1.7 | 0.000025 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acG | 1 | 29 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 28 | 28 | B.1.1.312 | 0.053537 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 27 | 27 | B.1.177 | 0.000356 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 21 | 21 | B.1.582 | 0.010304 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 20 | 20 | AY.66 | 0.02139 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 18 | 18 | B.1.1.70 | 0.006139 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 17 | 17 | AY.75 | 0.000952 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 14 | 14 | AY.102 | 0.000371 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 14 | 14 | B.1.409 | 0.010937 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 14 | 14 | B.1.9.4 | 0.08589 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 13 | 13 | AY.83 | 0.022414 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 13 | 13 | Q.3 | 0.001885 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 12 | 12 | AY.54 | 0.001144 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 12 | 12 | B.1.1.434 | 0.004183 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 12 | 12 | B.1.397 | 0.058252 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 11 | 11 | B.1.1.4 | 0.032738 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 10 | 10 | AY.46.5 | 0.001984 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 9 | 9 | B.1.346 | 0.011796 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | AS.1 | 0.066667 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 7 | 7 | B.1.177.44 | 0.003633 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | B.1.177.83 | 0.01037 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | B.1.287 | 0.212121 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | B.1.621.1 | 0.003541 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 7 | 7 | P.1.12 | 0.003388 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | B.1.1.263 | 0.009346 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | B.1.576 | 0.00544 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 5 | 5 | A.21 | 0.01385 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.147 | 0.003023 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | C.38 | 0.032258 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 4 | 4 | P.1.17.1 | 0.0035 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 1830 | T1830S | Act | Tct | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830del1 | aCt | a-t | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830del1 | acT | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830S | aCt | aGt | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.298 | 0.006342 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | B.1.9 | 0.018519 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1830 | T1830P | Act | Cct | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.227 | 0.008696 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 2 | 2 | B.1.1.285 | 0.013072 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.288 | 0.003831 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.430 | 0.083333 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.58 | 0.010753 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.1.75 | 0.021277 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.385 | 0.021277 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1830 | T1830K | aCT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830V | ACt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1830 | T1830S | Act | Tct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1830 | T1830P | Act | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1830 | T1830S | Act | Tct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1830 | T1830del1 | acT | ac- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1830 | T1830V | ACt | GTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1830 | T1830K | aCT | aAA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1830 | T1830N | aCt | aAt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1830 | T1830del1 | aCt | a-t | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1830 | T1830P | Act | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1830 | T1830S | aCt | aGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1830 | T1830del1 | aCt | a-t | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.69 | 0.035714 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp3 | 1830 | T1830T | acT | acA | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1830 | T1830I | aCT | aTA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1830 | T1830I | aCt | aTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1830 | T1830A | Act | Gct | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1830 | T1830del | ACT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|