CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1813 & Codon = Gct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31813S1813AS2631AnonsynTctGct1541530.9935068156-8158

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31813S1813ATctGct153154All0.000029
ORF1ab/nsp31813S1813ATctGct4646AY.430.000204
ORF1ab/nsp31813S1813ATctGct3434B.1.1.70.00003
ORF1ab/nsp31813S1813ATctGct1414B.10.000128
ORF1ab/nsp31813S1813ATctGct77AY.330.000467
ORF1ab/nsp31813S1813ATctGct66AY.40.000009
ORF1ab/nsp31813S1813ATctGct44AY.1030.000025
ORF1ab/nsp31813S1813ATctGct44B.1.4290.000094
ORF1ab/nsp31813S1813ATctGct33AY.1020.00008
ORF1ab/nsp31813S1813ATctGct33AY.1190.000106
ORF1ab/nsp31813S1813ATctGct33AY.30.00003
ORF1ab/nsp31813S1813ATctGct33B.1.1.250.001706
ORF1ab/nsp31813S1813ATctGct22AY.1060.00067
ORF1ab/nsp31813S1813ATctGct22AY.1180.000125
ORF1ab/nsp31813S1813ATctGct22B.1.1.1890.003026
ORF1ab/nsp31813S1813ATctGct22B.1.1.5190.000079
ORF1ab/nsp31813S1813ATctGct22B.1.1770.000026
ORF1ab/nsp31813S1813ATctGct22B.1.20.000018
ORF1ab/nsp31813S1813ATctGct22B.1.617.20.000008
ORF1ab/nsp31813S1813ATctGct11AY.1140.000231
ORF1ab/nsp31813S1813ATctGct11AY.120.000316
ORF1ab/nsp31813S1813ATctGct11AY.470.000031
ORF1ab/nsp31813S1813ATctGct11AY.650.000533
ORF1ab/nsp31813S1813ATctGct11AY.9.10.000084
ORF1ab/nsp31813S1813ATctGct11B.1.10.000018
ORF1ab/nsp31813S1813ATctGct11B.1.351.20.000303
ORF1ab/nsp31813S1813ATctGct11B.1.4270.00005
ORF1ab/nsp31813S1813ATctGct11B.1.6190.000871
ORF1ab/nsp31813S1813ATctGct11C.370.000116
ORF1ab/nsp31813S1813ATctGct11D.20.000075
ORF1ab/nsp31813S1813ATctGct11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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