CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1805

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31805N1805NN2623NsynaaTaaC2010201018132-8134
ORF1ab/nsp31805N1805SN2623SnonsynaAtaGt18018018132-8134
ORF1ab/nsp31805N1805DN2623DnonsynAatGat15415418132-8134
ORF1ab/nsp31805N1805TN2623TnonsynaAtaCt12512518132-8134
ORF1ab/nsp31805N1805delN2623deldelAAT---575718132-8134
ORF1ab/nsp31805N1805HN2623HnonsynAatCat404018132-8134
ORF1ab/nsp31805N1805KN2623KnonsynaaTaaA22150.6818188132-8134
ORF1ab/nsp31805N1805KN2623KnonsynaaTaaG2270.3181828132-8134
ORF1ab/nsp31805N1805YN2623YnonsynAatTat212118132-8134
ORF1ab/nsp31805N1805IN2623InonsynaAtaTt540.88132-8134
ORF1ab/nsp31805N1805IN2623InonsynaATaTA510.28132-8134
ORF1ab/nsp31805N1805del1N2623del1delaaTaa-210.58132-8134
ORF1ab/nsp31805N1805del1N2623del1delAat-at210.58132-8134
ORF1ab/nsp31805N1805VN2623VnonsynAATGTA1118132-8134
ORF1ab/nsp31805N1805del2N2623del2delAAt--t1118132-8134

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31805N1805NaaTaaC20102010All0.000384
ORF1ab/nsp31805N1805NaaTaaC868868AY.1140.200601
ORF1ab/nsp31805N1805NaaTaaC422422B.1.617.20.001589
ORF1ab/nsp31805N1805SaAtaGt180180All0.000034
ORF1ab/nsp31805N1805DAatGat154154All0.000029
ORF1ab/nsp31805N1805NaaTaaC145145B.1.10.00263
ORF1ab/nsp31805N1805NaaTaaC131131AY.480.06093
ORF1ab/nsp31805N1805TaAtaCt125125All0.000024
ORF1ab/nsp31805N1805DAatGat119119B.1.1.70.000107
ORF1ab/nsp31805N1805NaaTaaC107107AY.1020.002837
ORF1ab/nsp31805N1805SaAtaGt7171B.1.1.70.000064
ORF1ab/nsp31805N1805TaAtaCt6969AY.1200.002565
ORF1ab/nsp31805N1805delAAT---5757All0.000011
ORF1ab/nsp31805N1805NaaTaaC4242B.1.1.70.000038
ORF1ab/nsp31805N1805HAatCat4040All0.000008
ORF1ab/nsp31805N1805NaaTaaC4040AY.40.000062
ORF1ab/nsp31805N1805NaaTaaC3636B.1.1.5190.00143
ORF1ab/nsp31805N1805NaaTaaC2424AY.390.000593
ORF1ab/nsp31805N1805NaaTaaC2323AY.430.000102
ORF1ab/nsp31805N1805KaaTaaA1522All0.000003
ORF1ab/nsp31805N1805KaaTaaG722All0.000001
ORF1ab/nsp31805N1805delAAT---2222B.1.1.70.00002
ORF1ab/nsp31805N1805YAatTat2121All0.000004
ORF1ab/nsp31805N1805SaAtaGt1919P.10.000299
ORF1ab/nsp31805N1805NaaTaaC1717B.1.1.3411
ORF1ab/nsp31805N1805NaaTaaC1616AY.1030.000099
ORF1ab/nsp31805N1805HAatCat1616B.1.1.70.000014
ORF1ab/nsp31805N1805YAatTat1515B.1.1.70.000013
ORF1ab/nsp31805N1805SaAtaGt1414AY.430.000062
ORF1ab/nsp31805N1805TaAtaCt1414B.1.1.70.000013
ORF1ab/nsp31805N1805TaAtaCt1212B.1.617.20.000045
ORF1ab/nsp31805N1805NaaTaaC1111AY.39.10.000436
ORF1ab/nsp31805N1805DAatGat99B.1.177.810.001704
ORF1ab/nsp31805N1805SaAtaGt99B.1.617.20.000034
ORF1ab/nsp31805N1805NaaTaaC88AY.440.000049
ORF1ab/nsp31805N1805NaaTaaC88B.10.000073
ORF1ab/nsp31805N1805KaaTaaA78P.10.00011
ORF1ab/nsp31805N1805KaaTaaG18P.10.000016
ORF1ab/nsp31805N1805SaAtaGt77AY.40.000011
ORF1ab/nsp31805N1805NaaTaaC77AY.420.000282
ORF1ab/nsp31805N1805SaAtaGt77B.1.1770.000092
ORF1ab/nsp31805N1805NaaTaaC66AY.1000.000276
ORF1ab/nsp31805N1805TaAtaCt66AY.1020.000159
ORF1ab/nsp31805N1805delAAT---66AY.40.000009
ORF1ab/nsp31805N1805IaAtaTt45All0.000001
ORF1ab/nsp31805N1805IaATaTA15All0
ORF1ab/nsp31805N1805SaAtaGt55AY.1030.000031
ORF1ab/nsp31805N1805NaaTaaC55AY.1130.000712
ORF1ab/nsp31805N1805NaaTaaC55AY.140.00044
ORF1ab/nsp31805N1805TaAtaCt55AY.140.00044
ORF1ab/nsp31805N1805HAatCat55AY.250.00003
ORF1ab/nsp31805N1805NaaTaaC55AY.7.20.002796
ORF1ab/nsp31805N1805NaaTaaC55AY.920.001436
ORF1ab/nsp31805N1805KaaTaaA55B.1.258.170.00052
ORF1ab/nsp31805N1805NaaTaaC55B.1.2650.006353
ORF1ab/nsp31805N1805NaaTaaC44AY.1190.000141
ORF1ab/nsp31805N1805SaAtaGt44AY.9.20.000147
ORF1ab/nsp31805N1805delAAT---44B.10.000037
ORF1ab/nsp31805N1805NaaTaaC44B.1.1600.000125
ORF1ab/nsp31805N1805SaAtaGt44B.1.177.70.000659
ORF1ab/nsp31805N1805DAatGat33AY.1020.00008
ORF1ab/nsp31805N1805DAatGat33AY.230.000209
ORF1ab/nsp31805N1805NaaTaaC33AY.320.001597
ORF1ab/nsp31805N1805NaaTaaC33AY.360.000445
ORF1ab/nsp31805N1805TaAtaCt33AY.40.000005
ORF1ab/nsp31805N1805TaAtaCt33AY.4.50.000322
ORF1ab/nsp31805N1805SaAtaGt33AY.420.000121
ORF1ab/nsp31805N1805YAatTat33AY.430.000013
ORF1ab/nsp31805N1805DAatGat33AY.440.000018
ORF1ab/nsp31805N1805SaAtaGt33AY.99.20.000276
ORF1ab/nsp31805N1805NaaTaaC33B.1.1770.00004
ORF1ab/nsp31805N1805NaaTaaC33B.1.20.000026
ORF1ab/nsp31805N1805NaaTaaC33B.1.3510.000089
ORF1ab/nsp31805N1805SaAtaGt33B.1.4290.000071
ORF1ab/nsp31805N1805TaAtaCt33B.1.5710.029126
ORF1ab/nsp31805N1805NaaTaaC22A0.000774
ORF1ab/nsp31805N1805del1aaTaa-12All0
ORF1ab/nsp31805N1805del1Aat-at12All0
ORF1ab/nsp31805N1805SaAtaGt22AY.1190.000071
ORF1ab/nsp31805N1805NaaTaaC22AY.120.000632
ORF1ab/nsp31805N1805NaaTaaC22AY.1200.000074
ORF1ab/nsp31805N1805NaaTaaC22AY.160.000759
ORF1ab/nsp31805N1805SaAtaGt22AY.250.000012
ORF1ab/nsp31805N1805HAatCat22AY.30.00002
ORF1ab/nsp31805N1805SaAtaGt22AY.330.000134
ORF1ab/nsp31805N1805TaAtaCt22AY.360.000296
ORF1ab/nsp31805N1805NaaTaaC22AY.380.000999
ORF1ab/nsp31805N1805HAatCat22AY.390.000049
ORF1ab/nsp31805N1805TaAtaCt22AY.420.00008
ORF1ab/nsp31805N1805SaAtaGt22AY.440.000012
ORF1ab/nsp31805N1805NaaTaaC22AY.46.20.001271
ORF1ab/nsp31805N1805SaAtaGt22AY.650.001066
ORF1ab/nsp31805N1805NaaTaaC22AY.930.000546
ORF1ab/nsp31805N1805NaaTaaC22AY.99.20.000184
ORF1ab/nsp31805N1805HAatCat22B.10.000018
ORF1ab/nsp31805N1805delAAT---22B.1.10.000036
ORF1ab/nsp31805N1805DAatGat22B.1.10.000036
ORF1ab/nsp31805N1805delAAT---22B.1.1770.000026
ORF1ab/nsp31805N1805delAAT---22B.1.177.160.001329
ORF1ab/nsp31805N1805IaAtaTt12B.1.20.000009
ORF1ab/nsp31805N1805IaATaTA12B.1.20.000009
ORF1ab/nsp31805N1805SaAtaGt22B.1.258.170.000208
ORF1ab/nsp31805N1805KaaTaaA22B.1.258.40.006897
ORF1ab/nsp31805N1805NaaTaaC22B.1.3490.00143
ORF1ab/nsp31805N1805SaAtaGt22B.1.5260.000047
ORF1ab/nsp31805N1805NaaTaaC22B.1.5950.000522
ORF1ab/nsp31805N1805DAatGat22B.1.621.10.001012
ORF1ab/nsp31805N1805DAatGat22Q.80.00033
ORF1ab/nsp31805N1805del2AAt--t11All0
ORF1ab/nsp31805N1805VAATGTA11All0
ORF1ab/nsp31805N1805SaAtaGt11AY.1000.000046
ORF1ab/nsp31805N1805KaaTaaG11AY.1030.000006
ORF1ab/nsp31805N1805TaAtaCt11AY.1030.000006
ORF1ab/nsp31805N1805IaAtaTt11AY.1030.000006
ORF1ab/nsp31805N1805delAAT---11AY.1110.000183
ORF1ab/nsp31805N1805SaAtaGt11AY.1130.000142
ORF1ab/nsp31805N1805NaaTaaC11AY.1170.000085
ORF1ab/nsp31805N1805DAatGat11AY.1190.000035
ORF1ab/nsp31805N1805HAatCat11AY.1190.000035
ORF1ab/nsp31805N1805HAatCat11AY.1200.000037
ORF1ab/nsp31805N1805HAatCat11AY.130.000161
ORF1ab/nsp31805N1805NaaTaaC11AY.130.000161
ORF1ab/nsp31805N1805SaAtaGt11AY.140.000088
ORF1ab/nsp31805N1805delAAT---11AY.190.00114
ORF1ab/nsp31805N1805NaaTaaC11AY.200.000039
ORF1ab/nsp31805N1805SaAtaGt11AY.23.10.000417
ORF1ab/nsp31805N1805NaaTaaC11AY.250.000006
ORF1ab/nsp31805N1805NaaTaaC11AY.260.000028
ORF1ab/nsp31805N1805SaAtaGt11AY.30.00001
ORF1ab/nsp31805N1805NaaTaaC11AY.3.10.000085
ORF1ab/nsp31805N1805SaAtaGt11AY.360.000148
ORF1ab/nsp31805N1805KaaTaaA11AY.390.000025
ORF1ab/nsp31805N1805DAatGat11AY.40.000002
ORF1ab/nsp31805N1805HAatCat11AY.40.000002
ORF1ab/nsp31805N1805NaaTaaC11AY.4.50.000107
ORF1ab/nsp31805N1805delAAT---11AY.4.50.000107
ORF1ab/nsp31805N1805HAatCat11AY.420.00004
ORF1ab/nsp31805N1805delAAT---11AY.430.000004
ORF1ab/nsp31805N1805HAatCat11AY.430.000004
ORF1ab/nsp31805N1805TaAtaCt11AY.440.000006
ORF1ab/nsp31805N1805VAATGTA11AY.440.000006
ORF1ab/nsp31805N1805HAatCat11AY.440.000006
ORF1ab/nsp31805N1805NaaTaaC11AY.450.000122
ORF1ab/nsp31805N1805SaAtaGt11AY.460.000104
ORF1ab/nsp31805N1805NaaTaaC11AY.460.000104
ORF1ab/nsp31805N1805TaAtaCt11AY.460.000104
ORF1ab/nsp31805N1805delAAT---11AY.46.20.000635
ORF1ab/nsp31805N1805SaAtaGt11AY.46.60.000072
ORF1ab/nsp31805N1805NaaTaaC11AY.510.000909
ORF1ab/nsp31805N1805NaaTaaC11AY.540.000095
ORF1ab/nsp31805N1805NaaTaaC11AY.610.000105
ORF1ab/nsp31805N1805NaaTaaC11AY.620.000436
ORF1ab/nsp31805N1805NaaTaaC11AY.640.000595
ORF1ab/nsp31805N1805NaaTaaC11AY.740.000116
ORF1ab/nsp31805N1805TaAtaCt11AY.750.000056
ORF1ab/nsp31805N1805NaaTaaC11AY.840.000437
ORF1ab/nsp31805N1805NaaTaaC11AY.850.000427
ORF1ab/nsp31805N1805DAatGat11AY.920.000287
ORF1ab/nsp31805N1805NaaTaaC11AY.980.000079
ORF1ab/nsp31805N1805NaaTaaC11B0.000128
ORF1ab/nsp31805N1805SaAtaGt11B0.000128
ORF1ab/nsp31805N1805del1aaTaa-11B.10.000009
ORF1ab/nsp31805N1805KaaTaaG11B.1.10.000018
ORF1ab/nsp31805N1805SaAtaGt11B.1.10.000018
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.1210.002427
ORF1ab/nsp31805N1805SaAtaGt11B.1.1.1590.004673
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.2200.001859
ORF1ab/nsp31805N1805KaaTaaG11B.1.1.2220.000204
ORF1ab/nsp31805N1805HAatCat11B.1.1.2220.000204
ORF1ab/nsp31805N1805delAAT---11B.1.1.2360.006897
ORF1ab/nsp31805N1805SaAtaGt11B.1.1.2690.001353
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.280.000311
ORF1ab/nsp31805N1805HAatCat11B.1.1.2840.000107
ORF1ab/nsp31805N1805delAAT---11B.1.1.3060.000438
ORF1ab/nsp31805N1805delAAT---11B.1.1.3150.008475
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.3360.016667
ORF1ab/nsp31805N1805TaAtaCt11B.1.1.4090.002833
ORF1ab/nsp31805N1805delAAT---11B.1.1.460.004367
ORF1ab/nsp31805N1805DAatGat11B.1.1.500.000679
ORF1ab/nsp31805N1805IaAtaTt11B.1.1.70.000001
ORF1ab/nsp31805N1805del2AAt--t11B.1.1.70.000001
ORF1ab/nsp31805N1805KaaTaaG11B.1.1.70.000001
ORF1ab/nsp31805N1805del1Aat-at11B.1.1.70.000001
ORF1ab/nsp31805N1805delAAT---11B.1.1.700.000341
ORF1ab/nsp31805N1805HAatCat11B.1.1770.000013
ORF1ab/nsp31805N1805DAatGat11B.1.1770.000013
ORF1ab/nsp31805N1805DAatGat11B.1.177.100.000878
ORF1ab/nsp31805N1805delAAT---11B.1.177.180.00116
ORF1ab/nsp31805N1805NaaTaaC11B.1.177.200.001517
ORF1ab/nsp31805N1805SaAtaGt11B.1.177.420.000894
ORF1ab/nsp31805N1805delAAT---11B.1.177.60.000977
ORF1ab/nsp31805N1805delAAT---11B.1.177.620.001192
ORF1ab/nsp31805N1805delAAT---11B.1.177.70.000165
ORF1ab/nsp31805N1805SaAtaGt11B.1.177.810.000189
ORF1ab/nsp31805N1805HAatCat11B.1.20.000009
ORF1ab/nsp31805N1805YAatTat11B.1.20.000009
ORF1ab/nsp31805N1805YAatTat11B.1.2060.000816
ORF1ab/nsp31805N1805delAAT---11B.1.2420.018868
ORF1ab/nsp31805N1805delAAT---11B.1.36.180.00042
ORF1ab/nsp31805N1805SaAtaGt11B.1.36.90.003215
ORF1ab/nsp31805N1805DAatGat11B.1.3960.000706
ORF1ab/nsp31805N1805IaAtaTt11B.1.3980.002976
ORF1ab/nsp31805N1805NaaTaaC11B.1.4000.000429
ORF1ab/nsp31805N1805DAatGat11B.1.4290.000024
ORF1ab/nsp31805N1805NaaTaaC11B.1.4290.000024
ORF1ab/nsp31805N1805TaAtaCt11B.1.4290.000024
ORF1ab/nsp31805N1805SaAtaGt11B.1.4970.000315
ORF1ab/nsp31805N1805NaaTaaC11B.1.5250.000113
ORF1ab/nsp31805N1805HAatCat11B.1.5680.001111
ORF1ab/nsp31805N1805NaaTaaC11B.1.5890.007576
ORF1ab/nsp31805N1805DAatGat11B.1.617.20.000004
ORF1ab/nsp31805N1805HAatCat11B.1.6210.000089
ORF1ab/nsp31805N1805NaaTaaC11B.1.6210.000089
ORF1ab/nsp31805N1805delAAT---11B.1.6380.052632
ORF1ab/nsp31805N1805SaAtaGt11C.350.000774
ORF1ab/nsp31805N1805KaaTaaG11C.350.000774
ORF1ab/nsp31805N1805NaaTaaC11C.370.000116
ORF1ab/nsp31805N1805NaaTaaC11D.20.000075
ORF1ab/nsp31805N1805KaaTaaG11D.20.000075
ORF1ab/nsp31805N1805DAatGat11P.1.170.000162
ORF1ab/nsp31805N1805DAatGat11Q.10.000126
ORF1ab/nsp31805N1805delAAT---11Q.10.000126
ORF1ab/nsp31805N1805YAatTat11Q.80.000165
ORF1ab/nsp31805N1805delAAT---11U.30.003861