CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1805

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31805N1805NN2623NsynaaTaaC2010201018132-8134
ORF1ab/nsp31805N1805SN2623SnonsynaAtaGt18018018132-8134
ORF1ab/nsp31805N1805DN2623DnonsynAatGat15415418132-8134
ORF1ab/nsp31805N1805TN2623TnonsynaAtaCt12512518132-8134
ORF1ab/nsp31805N1805delN2623deldelAAT---575718132-8134
ORF1ab/nsp31805N1805HN2623HnonsynAatCat404018132-8134
ORF1ab/nsp31805N1805KN2623KnonsynaaTaaA22150.6818188132-8134
ORF1ab/nsp31805N1805KN2623KnonsynaaTaaG2270.3181828132-8134
ORF1ab/nsp31805N1805YN2623YnonsynAatTat212118132-8134
ORF1ab/nsp31805N1805IN2623InonsynaAtaTt540.88132-8134
ORF1ab/nsp31805N1805IN2623InonsynaATaTA510.28132-8134
ORF1ab/nsp31805N1805del1N2623del1delaaTaa-210.58132-8134
ORF1ab/nsp31805N1805del1N2623del1delAat-at210.58132-8134
ORF1ab/nsp31805N1805VN2623VnonsynAATGTA1118132-8134
ORF1ab/nsp31805N1805del2N2623del2delAAt--t1118132-8134

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31805N1805NaaTaaC20102010All0.000384
ORF1ab/nsp31805N1805NaaTaaC868868AY.1140.200601
ORF1ab/nsp31805N1805NaaTaaC422422B.1.617.20.001589
ORF1ab/nsp31805N1805SaAtaGt180180All0.000034
ORF1ab/nsp31805N1805DAatGat154154All0.000029
ORF1ab/nsp31805N1805NaaTaaC145145B.1.10.00263
ORF1ab/nsp31805N1805NaaTaaC131131AY.480.06093
ORF1ab/nsp31805N1805TaAtaCt125125All0.000024
ORF1ab/nsp31805N1805DAatGat119119B.1.1.70.000107
ORF1ab/nsp31805N1805NaaTaaC107107AY.1020.002837
ORF1ab/nsp31805N1805SaAtaGt7171B.1.1.70.000064
ORF1ab/nsp31805N1805TaAtaCt6969AY.1200.002565
ORF1ab/nsp31805N1805delAAT---5757All0.000011
ORF1ab/nsp31805N1805NaaTaaC4242B.1.1.70.000038
ORF1ab/nsp31805N1805HAatCat4040All0.000008
ORF1ab/nsp31805N1805NaaTaaC4040AY.40.000062
ORF1ab/nsp31805N1805NaaTaaC3636B.1.1.5190.00143
ORF1ab/nsp31805N1805NaaTaaC2424AY.390.000593
ORF1ab/nsp31805N1805NaaTaaC2323AY.430.000102
ORF1ab/nsp31805N1805KaaTaaA1522All0.000003
ORF1ab/nsp31805N1805KaaTaaG722All0.000001
ORF1ab/nsp31805N1805delAAT---2222B.1.1.70.00002
ORF1ab/nsp31805N1805YAatTat2121All0.000004
ORF1ab/nsp31805N1805SaAtaGt1919P.10.000299
ORF1ab/nsp31805N1805NaaTaaC1717B.1.1.3411
ORF1ab/nsp31805N1805NaaTaaC1616AY.1030.000099
ORF1ab/nsp31805N1805HAatCat1616B.1.1.70.000014
ORF1ab/nsp31805N1805YAatTat1515B.1.1.70.000013
ORF1ab/nsp31805N1805SaAtaGt1414AY.430.000062
ORF1ab/nsp31805N1805TaAtaCt1414B.1.1.70.000013
ORF1ab/nsp31805N1805TaAtaCt1212B.1.617.20.000045
ORF1ab/nsp31805N1805NaaTaaC1111AY.39.10.000436
ORF1ab/nsp31805N1805DAatGat99B.1.177.810.001704
ORF1ab/nsp31805N1805SaAtaGt99B.1.617.20.000034
ORF1ab/nsp31805N1805NaaTaaC88AY.440.000049
ORF1ab/nsp31805N1805NaaTaaC88B.10.000073
ORF1ab/nsp31805N1805KaaTaaA78P.10.00011
ORF1ab/nsp31805N1805KaaTaaG18P.10.000016
ORF1ab/nsp31805N1805SaAtaGt77AY.40.000011
ORF1ab/nsp31805N1805NaaTaaC77AY.420.000282
ORF1ab/nsp31805N1805SaAtaGt77B.1.1770.000092
ORF1ab/nsp31805N1805NaaTaaC66AY.1000.000276
ORF1ab/nsp31805N1805TaAtaCt66AY.1020.000159
ORF1ab/nsp31805N1805delAAT---66AY.40.000009
ORF1ab/nsp31805N1805IaAtaTt45All0.000001
ORF1ab/nsp31805N1805IaATaTA15All0
ORF1ab/nsp31805N1805SaAtaGt55AY.1030.000031
ORF1ab/nsp31805N1805NaaTaaC55AY.1130.000712
ORF1ab/nsp31805N1805NaaTaaC55AY.140.00044
ORF1ab/nsp31805N1805TaAtaCt55AY.140.00044
ORF1ab/nsp31805N1805HAatCat55AY.250.00003
ORF1ab/nsp31805N1805NaaTaaC55AY.7.20.002796
ORF1ab/nsp31805N1805NaaTaaC55AY.920.001436
ORF1ab/nsp31805N1805KaaTaaA55B.1.258.170.00052
ORF1ab/nsp31805N1805NaaTaaC55B.1.2650.006353
ORF1ab/nsp31805N1805NaaTaaC44AY.1190.000141
ORF1ab/nsp31805N1805SaAtaGt44AY.9.20.000147
ORF1ab/nsp31805N1805delAAT---44B.10.000037
ORF1ab/nsp31805N1805NaaTaaC44B.1.1600.000125
ORF1ab/nsp31805N1805SaAtaGt44B.1.177.70.000659
ORF1ab/nsp31805N1805DAatGat33AY.1020.00008
ORF1ab/nsp31805N1805DAatGat33AY.230.000209
ORF1ab/nsp31805N1805NaaTaaC33AY.320.001597
ORF1ab/nsp31805N1805NaaTaaC33AY.360.000445
ORF1ab/nsp31805N1805TaAtaCt33AY.40.000005
ORF1ab/nsp31805N1805TaAtaCt33AY.4.50.000322
ORF1ab/nsp31805N1805SaAtaGt33AY.420.000121
ORF1ab/nsp31805N1805YAatTat33AY.430.000013
ORF1ab/nsp31805N1805DAatGat33AY.440.000018
ORF1ab/nsp31805N1805SaAtaGt33AY.99.20.000276
ORF1ab/nsp31805N1805NaaTaaC33B.1.1770.00004
ORF1ab/nsp31805N1805NaaTaaC33B.1.20.000026
ORF1ab/nsp31805N1805NaaTaaC33B.1.3510.000089
ORF1ab/nsp31805N1805SaAtaGt33B.1.4290.000071
ORF1ab/nsp31805N1805TaAtaCt33B.1.5710.029126
ORF1ab/nsp31805N1805NaaTaaC22A0.000774
ORF1ab/nsp31805N1805del1aaTaa-12All0
ORF1ab/nsp31805N1805del1Aat-at12All0
ORF1ab/nsp31805N1805SaAtaGt22AY.1190.000071
ORF1ab/nsp31805N1805NaaTaaC22AY.120.000632
ORF1ab/nsp31805N1805NaaTaaC22AY.1200.000074
ORF1ab/nsp31805N1805NaaTaaC22AY.160.000759
ORF1ab/nsp31805N1805SaAtaGt22AY.250.000012
ORF1ab/nsp31805N1805HAatCat22AY.30.00002
ORF1ab/nsp31805N1805SaAtaGt22AY.330.000134
ORF1ab/nsp31805N1805TaAtaCt22AY.360.000296
ORF1ab/nsp31805N1805NaaTaaC22AY.380.000999
ORF1ab/nsp31805N1805HAatCat22AY.390.000049
ORF1ab/nsp31805N1805TaAtaCt22AY.420.00008
ORF1ab/nsp31805N1805SaAtaGt22AY.440.000012
ORF1ab/nsp31805N1805NaaTaaC22AY.46.20.001271
ORF1ab/nsp31805N1805SaAtaGt22AY.650.001066
ORF1ab/nsp31805N1805NaaTaaC22AY.930.000546
ORF1ab/nsp31805N1805NaaTaaC22AY.99.20.000184
ORF1ab/nsp31805N1805HAatCat22B.10.000018
ORF1ab/nsp31805N1805delAAT---22B.1.10.000036
ORF1ab/nsp31805N1805DAatGat22B.1.10.000036
ORF1ab/nsp31805N1805delAAT---22B.1.1770.000026
ORF1ab/nsp31805N1805delAAT---22B.1.177.160.001329
ORF1ab/nsp31805N1805IaAtaTt12B.1.20.000009
ORF1ab/nsp31805N1805IaATaTA12B.1.20.000009
ORF1ab/nsp31805N1805SaAtaGt22B.1.258.170.000208
ORF1ab/nsp31805N1805KaaTaaA22B.1.258.40.006897
ORF1ab/nsp31805N1805NaaTaaC22B.1.3490.00143
ORF1ab/nsp31805N1805SaAtaGt22B.1.5260.000047
ORF1ab/nsp31805N1805NaaTaaC22B.1.5950.000522
ORF1ab/nsp31805N1805DAatGat22B.1.621.10.001012
ORF1ab/nsp31805N1805DAatGat22Q.80.00033
ORF1ab/nsp31805N1805del2AAt--t11All0
ORF1ab/nsp31805N1805VAATGTA11All0
ORF1ab/nsp31805N1805SaAtaGt11AY.1000.000046
ORF1ab/nsp31805N1805KaaTaaG11AY.1030.000006
ORF1ab/nsp31805N1805TaAtaCt11AY.1030.000006
ORF1ab/nsp31805N1805IaAtaTt11AY.1030.000006
ORF1ab/nsp31805N1805delAAT---11AY.1110.000183
ORF1ab/nsp31805N1805SaAtaGt11AY.1130.000142
ORF1ab/nsp31805N1805NaaTaaC11AY.1170.000085
ORF1ab/nsp31805N1805DAatGat11AY.1190.000035
ORF1ab/nsp31805N1805HAatCat11AY.1190.000035
ORF1ab/nsp31805N1805HAatCat11AY.1200.000037
ORF1ab/nsp31805N1805HAatCat11AY.130.000161
ORF1ab/nsp31805N1805NaaTaaC11AY.130.000161
ORF1ab/nsp31805N1805SaAtaGt11AY.140.000088
ORF1ab/nsp31805N1805delAAT---11AY.190.00114
ORF1ab/nsp31805N1805NaaTaaC11AY.200.000039
ORF1ab/nsp31805N1805SaAtaGt11AY.23.10.000417
ORF1ab/nsp31805N1805NaaTaaC11AY.250.000006
ORF1ab/nsp31805N1805NaaTaaC11AY.260.000028
ORF1ab/nsp31805N1805SaAtaGt11AY.30.00001
ORF1ab/nsp31805N1805NaaTaaC11AY.3.10.000085
ORF1ab/nsp31805N1805SaAtaGt11AY.360.000148
ORF1ab/nsp31805N1805KaaTaaA11AY.390.000025
ORF1ab/nsp31805N1805DAatGat11AY.40.000002
ORF1ab/nsp31805N1805HAatCat11AY.40.000002
ORF1ab/nsp31805N1805NaaTaaC11AY.4.50.000107
ORF1ab/nsp31805N1805delAAT---11AY.4.50.000107
ORF1ab/nsp31805N1805HAatCat11AY.420.00004
ORF1ab/nsp31805N1805delAAT---11AY.430.000004
ORF1ab/nsp31805N1805HAatCat11AY.430.000004
ORF1ab/nsp31805N1805TaAtaCt11AY.440.000006
ORF1ab/nsp31805N1805VAATGTA11AY.440.000006
ORF1ab/nsp31805N1805HAatCat11AY.440.000006
ORF1ab/nsp31805N1805NaaTaaC11AY.450.000122
ORF1ab/nsp31805N1805SaAtaGt11AY.460.000104
ORF1ab/nsp31805N1805NaaTaaC11AY.460.000104
ORF1ab/nsp31805N1805TaAtaCt11AY.460.000104
ORF1ab/nsp31805N1805delAAT---11AY.46.20.000635
ORF1ab/nsp31805N1805SaAtaGt11AY.46.60.000072
ORF1ab/nsp31805N1805NaaTaaC11AY.510.000909
ORF1ab/nsp31805N1805NaaTaaC11AY.540.000095
ORF1ab/nsp31805N1805NaaTaaC11AY.610.000105
ORF1ab/nsp31805N1805NaaTaaC11AY.620.000436
ORF1ab/nsp31805N1805NaaTaaC11AY.640.000595
ORF1ab/nsp31805N1805NaaTaaC11AY.740.000116
ORF1ab/nsp31805N1805TaAtaCt11AY.750.000056
ORF1ab/nsp31805N1805NaaTaaC11AY.840.000437
ORF1ab/nsp31805N1805NaaTaaC11AY.850.000427
ORF1ab/nsp31805N1805DAatGat11AY.920.000287
ORF1ab/nsp31805N1805NaaTaaC11AY.980.000079
ORF1ab/nsp31805N1805NaaTaaC11B0.000128
ORF1ab/nsp31805N1805SaAtaGt11B0.000128
ORF1ab/nsp31805N1805del1aaTaa-11B.10.000009
ORF1ab/nsp31805N1805KaaTaaG11B.1.10.000018
ORF1ab/nsp31805N1805SaAtaGt11B.1.10.000018
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.1210.002427
ORF1ab/nsp31805N1805SaAtaGt11B.1.1.1590.004673
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.2200.001859
ORF1ab/nsp31805N1805KaaTaaG11B.1.1.2220.000204
ORF1ab/nsp31805N1805HAatCat11B.1.1.2220.000204
ORF1ab/nsp31805N1805delAAT---11B.1.1.2360.006897
ORF1ab/nsp31805N1805SaAtaGt11B.1.1.2690.001353
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.280.000311
ORF1ab/nsp31805N1805HAatCat11B.1.1.2840.000107
ORF1ab/nsp31805N1805delAAT---11B.1.1.3060.000438
ORF1ab/nsp31805N1805delAAT---11B.1.1.3150.008475
ORF1ab/nsp31805N1805NaaTaaC11B.1.1.3360.016667
ORF1ab/nsp31805N1805TaAtaCt11B.1.1.4090.002833
ORF1ab/nsp31805N1805delAAT---11B.1.1.460.004367
ORF1ab/nsp31805N1805DAatGat11B.1.1.500.000679
ORF1ab/nsp31805N1805IaAtaTt11B.1.1.70.000001
ORF1ab/nsp31805N1805del2AAt--t11B.1.1.70.000001
ORF1ab/nsp31805N1805KaaTaaG11B.1.1.70.000001
ORF1ab/nsp31805N1805del1Aat-at11B.1.1.70.000001
ORF1ab/nsp31805N1805delAAT---11B.1.1.700.000341
ORF1ab/nsp31805N1805HAatCat11B.1.1770.000013
ORF1ab/nsp31805N1805DAatGat11B.1.1770.000013
ORF1ab/nsp31805N1805DAatGat11B.1.177.100.000878
ORF1ab/nsp31805N1805delAAT---11B.1.177.180.00116
ORF1ab/nsp31805N1805NaaTaaC11B.1.177.200.001517
ORF1ab/nsp31805N1805SaAtaGt11B.1.177.420.000894
ORF1ab/nsp31805N1805delAAT---11B.1.177.60.000977
ORF1ab/nsp31805N1805delAAT---11B.1.177.620.001192
ORF1ab/nsp31805N1805delAAT---11B.1.177.70.000165
ORF1ab/nsp31805N1805SaAtaGt11B.1.177.810.000189
ORF1ab/nsp31805N1805HAatCat11B.1.20.000009
ORF1ab/nsp31805N1805YAatTat11B.1.20.000009
ORF1ab/nsp31805N1805YAatTat11B.1.2060.000816
ORF1ab/nsp31805N1805delAAT---11B.1.2420.018868
ORF1ab/nsp31805N1805delAAT---11B.1.36.180.00042
ORF1ab/nsp31805N1805SaAtaGt11B.1.36.90.003215
ORF1ab/nsp31805N1805DAatGat11B.1.3960.000706
ORF1ab/nsp31805N1805IaAtaTt11B.1.3980.002976
ORF1ab/nsp31805N1805NaaTaaC11B.1.4000.000429
ORF1ab/nsp31805N1805DAatGat11B.1.4290.000024
ORF1ab/nsp31805N1805NaaTaaC11B.1.4290.000024
ORF1ab/nsp31805N1805TaAtaCt11B.1.4290.000024
ORF1ab/nsp31805N1805SaAtaGt11B.1.4970.000315
ORF1ab/nsp31805N1805NaaTaaC11B.1.5250.000113
ORF1ab/nsp31805N1805HAatCat11B.1.5680.001111
ORF1ab/nsp31805N1805NaaTaaC11B.1.5890.007576
ORF1ab/nsp31805N1805DAatGat11B.1.617.20.000004
ORF1ab/nsp31805N1805HAatCat11B.1.6210.000089
ORF1ab/nsp31805N1805NaaTaaC11B.1.6210.000089
ORF1ab/nsp31805N1805delAAT---11B.1.6380.052632
ORF1ab/nsp31805N1805SaAtaGt11C.350.000774
ORF1ab/nsp31805N1805KaaTaaG11C.350.000774
ORF1ab/nsp31805N1805NaaTaaC11C.370.000116
ORF1ab/nsp31805N1805NaaTaaC11D.20.000075
ORF1ab/nsp31805N1805KaaTaaG11D.20.000075
ORF1ab/nsp31805N1805DAatGat11P.1.170.000162
ORF1ab/nsp31805N1805DAatGat11Q.10.000126
ORF1ab/nsp31805N1805delAAT---11Q.10.000126
ORF1ab/nsp31805N1805YAatTat11Q.80.000165
ORF1ab/nsp31805N1805delAAT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.