CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 18

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp318Y18YY836YsyntaCtaT2637263712771-2773
ORF1ab/nsp318Y18CY836CnonsyntActGc31531512771-2773
ORF1ab/nsp318Y18HY836HnonsynTacCac1251230.9842771-2773
ORF1ab/nsp318Y18HY836HnonsynTaCCaT12520.0162771-2773
ORF1ab/nsp318Y18delY836deldelTAC---565612771-2773
ORF1ab/nsp318Y18NY836NnonsynTacAac121212771-2773
ORF1ab/nsp318Y18XY836XnonsyntaCtaG740.5714292771-2773
ORF1ab/nsp318Y18XY836XnonsyntaCtaA730.4285712771-2773
ORF1ab/nsp318Y18FY836FnonsyntActTc5512771-2773
ORF1ab/nsp318Y18SY836SnonsyntActCc3312771-2773
ORF1ab/nsp318Y18DY836DnonsynTacGac3312771-2773
ORF1ab/nsp318Y18del1Y836del1delTaC-aT210.52771-2773
ORF1ab/nsp318Y18del1Y836del1delTaCGa-210.52771-2773
ORF1ab/nsp318Y18LY836LnonsyntACtTA210.52771-2773
ORF1ab/nsp318Y18LY836LnonsyntACtTG210.52771-2773
ORF1ab/nsp318Y18RY836RnonsynTACCGG1112771-2773
ORF1ab/nsp318Y18del2Y836del2delTAc--c1112771-2773

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp318Y18YtaCtaT26372637All0.000504
ORF1ab/nsp318Y18YtaCtaT567567AY.9.10.047472
ORF1ab/nsp318Y18YtaCtaT492492AY.99.20.045341
ORF1ab/nsp318Y18CtActGc315315All0.00006
ORF1ab/nsp318Y18YtaCtaT293293B.1.1.70.000262
ORF1ab/nsp318Y18YtaCtaT259259B.1.177.410.6475
ORF1ab/nsp318Y18YtaCtaT159159B.1.20.0014
ORF1ab/nsp318Y18HTacCac123125All0.000024
ORF1ab/nsp318Y18HTaCCaT2125All0
ORF1ab/nsp318Y18YtaCtaT112112AY.1190.003955
ORF1ab/nsp318Y18YtaCtaT106106AY.440.000645
ORF1ab/nsp318Y18YtaCtaT103103AY.40.00016
ORF1ab/nsp318Y18YtaCtaT6767B.1.617.20.000252
ORF1ab/nsp318Y18HTacCac6363B.1.1.70.000056
ORF1ab/nsp318Y18delTAC---5656All0.000011
ORF1ab/nsp318Y18CtActGc5555B.1.1.70.000049
ORF1ab/nsp318Y18CtActGc5050AY.40.000078
ORF1ab/nsp318Y18YtaCtaT4848B.1.3510.001427
ORF1ab/nsp318Y18YtaCtaT3737B.1.1770.000487
ORF1ab/nsp318Y18CtActGc3434AY.9.10.002847
ORF1ab/nsp318Y18CtActGc3333AY.430.000146
ORF1ab/nsp318Y18YtaCtaT3131B.1.360.004523
ORF1ab/nsp318Y18YtaCtaT3030B.10.000275
ORF1ab/nsp318Y18YtaCtaT2929AY.1030.00018
ORF1ab/nsp318Y18YtaCtaT2222B.1.5260.000517
ORF1ab/nsp318Y18YtaCtaT2020AY.430.000089
ORF1ab/nsp318Y18CtActGc2020B.1.617.20.000075
ORF1ab/nsp318Y18CtActGc1919AY.460.001978
ORF1ab/nsp318Y18YtaCtaT1717P.10.000268
ORF1ab/nsp318Y18HTacCac1415AY.440.000085
ORF1ab/nsp318Y18HTaCCaT115AY.440.000006
ORF1ab/nsp318Y18YtaCtaT1313AY.200.000505
ORF1ab/nsp318Y18CtActGc1313AY.50.000268
ORF1ab/nsp318Y18YtaCtaT1313AY.9.20.000477
ORF1ab/nsp318Y18NTacAac1212All0.000002
ORF1ab/nsp318Y18YtaCtaT1111AY.250.000066
ORF1ab/nsp318Y18HTacCac1010AY.1030.000062
ORF1ab/nsp318Y18YtaCtaT1010B.1.1.3170.004117
ORF1ab/nsp318Y18YtaCtaT1010Q.10.001263
ORF1ab/nsp318Y18YtaCtaT99AY.30.00009
ORF1ab/nsp318Y18YtaCtaT99B.1.36.220.01087
ORF1ab/nsp318Y18delTAC---88B.10.000073
ORF1ab/nsp318Y18XtaCtaG47All0.000001
ORF1ab/nsp318Y18XtaCtaA37All0.000001
ORF1ab/nsp318Y18YtaCtaT77AY.290.00011
ORF1ab/nsp318Y18YtaCtaT77AY.60.000288
ORF1ab/nsp318Y18YtaCtaT77AY.750.000392
ORF1ab/nsp318Y18NTacAac77B.1.1.70.000006
ORF1ab/nsp318Y18delTAC---77B.1.1.70.000006
ORF1ab/nsp318Y18HTacCac77B.1.20.000062
ORF1ab/nsp318Y18YtaCtaT77B.1.617.10.000903
ORF1ab/nsp318Y18YtaCtaT66AY.360.000889
ORF1ab/nsp318Y18YtaCtaT66AY.390.000148
ORF1ab/nsp318Y18CtActGc66AY.440.000037
ORF1ab/nsp318Y18YtaCtaT66B.1.2430.000418
ORF1ab/nsp318Y18FtActTc55All0.000001
ORF1ab/nsp318Y18YtaCtaT55AY.1020.000133
ORF1ab/nsp318Y18YtaCtaT55AY.16.10.00235
ORF1ab/nsp318Y18CtActGc55AY.7.20.002796
ORF1ab/nsp318Y18YtaCtaT55B.1.10.000091
ORF1ab/nsp318Y18YtaCtaT55B.1.9.40.030675
ORF1ab/nsp318Y18delTAC---440.222222
ORF1ab/nsp318Y18YtaCtaT44AY.1000.000184
ORF1ab/nsp318Y18YtaCtaT44AY.4.20.000087
ORF1ab/nsp318Y18CtActGc44AY.46.20.002541
ORF1ab/nsp318Y18CtActGc44AY.98.10.000194
ORF1ab/nsp318Y18YtaCtaT44B.1.1.2220.000816
ORF1ab/nsp318Y18DTacGac33All0.000001
ORF1ab/nsp318Y18StActCc33All0.000001
ORF1ab/nsp318Y18CtActGc33AY.1020.00008
ORF1ab/nsp318Y18CtActGc33AY.1030.000019
ORF1ab/nsp318Y18CtActGc33AY.340.000291
ORF1ab/nsp318Y18CtActGc33AY.34.10.00153
ORF1ab/nsp318Y18CtActGc33AY.360.000445
ORF1ab/nsp318Y18CtActGc33AY.390.000074
ORF1ab/nsp318Y18HTacCac33AY.39.10.000119
ORF1ab/nsp318Y18CtActGc33AY.46.40.000494
ORF1ab/nsp318Y18CtActGc33AY.46.60.000217
ORF1ab/nsp318Y18CtActGc33AY.9.20.00011
ORF1ab/nsp318Y18CtActGc33AY.940.001328
ORF1ab/nsp318Y18XtaCtaA23B.10.000018
ORF1ab/nsp318Y18XtaCtaG13B.10.000009
ORF1ab/nsp318Y18delTAC---33B.1.10.000054
ORF1ab/nsp318Y18delTAC---33B.1.1.330.001263
ORF1ab/nsp318Y18YtaCtaT33B.1.1600.000094
ORF1ab/nsp318Y18delTAC---33B.1.1770.00004
ORF1ab/nsp318Y18YtaCtaT33B.1.177.770.002179
ORF1ab/nsp318Y18CtActGc33B.1.20.000026
ORF1ab/nsp318Y18YtaCtaT33B.1.4290.000071
ORF1ab/nsp318Y18delTAC---33B.1.4290.000071
ORF1ab/nsp318Y18StActCc220.111111
ORF1ab/nsp318Y18CtActGc22A.2.40.006734
ORF1ab/nsp318Y18YtaCtaT22A.210.00554
ORF1ab/nsp318Y18YtaCtaT22AE.20.117647
ORF1ab/nsp318Y18del1TaCGa-12All0
ORF1ab/nsp318Y18LtACtTA12All0
ORF1ab/nsp318Y18LtACtTG12All0
ORF1ab/nsp318Y18del1TaC-aT12All0
ORF1ab/nsp318Y18CtActGc22AY.1160.000574
ORF1ab/nsp318Y18CtActGc22AY.1210.000271
ORF1ab/nsp318Y18YtaCtaT22AY.1210.000271
ORF1ab/nsp318Y18HTacCac22AY.200.000078
ORF1ab/nsp318Y18HTacCac22AY.250.000012
ORF1ab/nsp318Y18HTacCac22AY.30.00002
ORF1ab/nsp318Y18CtActGc22AY.4.40.000818
ORF1ab/nsp318Y18CtActGc22AY.730.001331
ORF1ab/nsp318Y18YtaCtaT22AY.75.10.000361
ORF1ab/nsp318Y18CtActGc22AY.90.000135
ORF1ab/nsp318Y18HTacCac22B.10.000018
ORF1ab/nsp318Y18CtActGc22B.10.000018
ORF1ab/nsp318Y18YtaCtaT22B.1.1.1760.000879
ORF1ab/nsp318Y18YtaCtaT22B.1.1.280.000622
ORF1ab/nsp318Y18delTAC---22B.1.1.3150.016949
ORF1ab/nsp318Y18delTAC---22B.1.1.3480.001592
ORF1ab/nsp318Y18YtaCtaT22B.1.1.3890.012121
ORF1ab/nsp318Y18FtActTc22B.1.1.70.000002
ORF1ab/nsp318Y18YtaCtaT22B.1.36.280.011494
ORF1ab/nsp318Y18delTAC---22B.1.4240.016129
ORF1ab/nsp318Y18YtaCtaT22B.1.438.10.000215
ORF1ab/nsp318Y18YtaCtaT22B.1.4700.002809
ORF1ab/nsp318Y18YtaCtaT22B.1.5250.000226
ORF1ab/nsp318Y18YtaCtaT22B.1.6370.000146
ORF1ab/nsp318Y18YtaCtaT22B.310.007463
ORF1ab/nsp318Y18delTAC---22N.60.014184
ORF1ab/nsp318Y18delTAC---22P.10.000032
ORF1ab/nsp318Y18YtaCtaT22Q.30.00029
ORF1ab/nsp318Y18FtActTc110.055556
ORF1ab/nsp318Y18LtACtTG110.055556
ORF1ab/nsp318Y18XtaCtaG110.055556
ORF1ab/nsp318Y18YtaCtaT11A0.000387
ORF1ab/nsp318Y18DTacGac11A.20.000662
ORF1ab/nsp318Y18RTACCGG11All0
ORF1ab/nsp318Y18del2TAc--c11All0
ORF1ab/nsp318Y18YtaCtaT11AY.10.000396
ORF1ab/nsp318Y18CtActGc11AY.1000.000046
ORF1ab/nsp318Y18HTacCac11AY.1000.000046
ORF1ab/nsp318Y18HTacCac11AY.1020.000027
ORF1ab/nsp318Y18YtaCtaT11AY.1040.001984
ORF1ab/nsp318Y18HTacCac11AY.1060.000335
ORF1ab/nsp318Y18YtaCtaT11AY.1080.001103
ORF1ab/nsp318Y18CtActGc11AY.1110.000183
ORF1ab/nsp318Y18YtaCtaT11AY.1110.000183
ORF1ab/nsp318Y18delTAC---11AY.1110.000183
ORF1ab/nsp318Y18HTacCac11AY.1170.000085
ORF1ab/nsp318Y18CtActGc11AY.1170.000085
ORF1ab/nsp318Y18YtaCtaT11AY.1200.000037
ORF1ab/nsp318Y18HTacCac11AY.120.10.000321
ORF1ab/nsp318Y18CtActGc11AY.120.2.10.000498
ORF1ab/nsp318Y18YtaCtaT11AY.160.00038
ORF1ab/nsp318Y18delTAC---11AY.190.00114
ORF1ab/nsp318Y18HTacCac11AY.230.00007
ORF1ab/nsp318Y18YtaCtaT11AY.230.00007
ORF1ab/nsp318Y18CtActGc11AY.230.00007
ORF1ab/nsp318Y18YtaCtaT11AY.23.10.000417
ORF1ab/nsp318Y18NTacAac11AY.250.000006
ORF1ab/nsp318Y18RTACCGG11AY.250.000006
ORF1ab/nsp318Y18CtActGc11AY.260.000028
ORF1ab/nsp318Y18YtaCtaT11AY.270.000065
ORF1ab/nsp318Y18HTacCac11AY.290.000016
ORF1ab/nsp318Y18NTacAac11AY.30.00001
ORF1ab/nsp318Y18CtActGc11AY.330.000067
ORF1ab/nsp318Y18YtaCtaT11AY.330.000067
ORF1ab/nsp318Y18CtActGc11AY.370.000316
ORF1ab/nsp318Y18YtaCtaT11AY.380.000499
ORF1ab/nsp318Y18CtActGc11AY.380.000499
ORF1ab/nsp318Y18NTacAac11AY.40.000002
ORF1ab/nsp318Y18HTacCac11AY.40.000002
ORF1ab/nsp318Y18HTacCac11AY.4.2.10.000149
ORF1ab/nsp318Y18CtActGc11AY.4.2.10.000149
ORF1ab/nsp318Y18YtaCtaT11AY.4.50.000107
ORF1ab/nsp318Y18delTAC---11AY.400.000964
ORF1ab/nsp318Y18HTacCac11AY.430.000004
ORF1ab/nsp318Y18NTacAac11AY.440.000006
ORF1ab/nsp318Y18LtACtTA11AY.440.000006
ORF1ab/nsp318Y18YtaCtaT11AY.450.000122
ORF1ab/nsp318Y18YtaCtaT11AY.46.10.001027
ORF1ab/nsp318Y18YtaCtaT11AY.46.50.000198
ORF1ab/nsp318Y18HTacCac11AY.470.000031
ORF1ab/nsp318Y18YtaCtaT11AY.50.000021
ORF1ab/nsp318Y18YtaCtaT11AY.5.40.000277
ORF1ab/nsp318Y18YtaCtaT11AY.570.000656
ORF1ab/nsp318Y18delTAC---11AY.60.000041
ORF1ab/nsp318Y18CtActGc11AY.610.000105
ORF1ab/nsp318Y18HTacCac11AY.640.000595
ORF1ab/nsp318Y18YtaCtaT11AY.660.00107
ORF1ab/nsp318Y18delTAC---11AY.680.000274
ORF1ab/nsp318Y18DTacGac11AY.690.000187
ORF1ab/nsp318Y18CtActGc11AY.710.000475
ORF1ab/nsp318Y18CtActGc11AY.720.001361
ORF1ab/nsp318Y18CtActGc11AY.850.000427
ORF1ab/nsp318Y18YtaCtaT11AY.860.00083
ORF1ab/nsp318Y18CtActGc11AY.860.00083
ORF1ab/nsp318Y18CtActGc11AY.890.004902
ORF1ab/nsp318Y18HTacCac11AY.90.000068
ORF1ab/nsp318Y18HTaCCaT11AY.9.20.000037
ORF1ab/nsp318Y18CtActGc11AY.920.000287
ORF1ab/nsp318Y18CtActGc11AY.970.001701
ORF1ab/nsp318Y18YtaCtaT11AY.980.000079
ORF1ab/nsp318Y18delTAC---11AY.98.10.000048
ORF1ab/nsp318Y18YtaCtaT11AY.99.10.001553
ORF1ab/nsp318Y18FtActTc11B.1.10.000018
ORF1ab/nsp318Y18YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp318Y18YtaCtaT11B.1.1.2310.003096
ORF1ab/nsp318Y18NTacAac11B.1.1.280.000311
ORF1ab/nsp318Y18CtActGc11B.1.1.280.000311
ORF1ab/nsp318Y18YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp318Y18YtaCtaT11B.1.1.330.000421
ORF1ab/nsp318Y18YtaCtaT11B.1.1.390.00051
ORF1ab/nsp318Y18delTAC---11B.1.1.4160.000905
ORF1ab/nsp318Y18delTAC---11B.1.1.460.004367
ORF1ab/nsp318Y18YtaCtaT11B.1.1.5190.00004
ORF1ab/nsp318Y18StActCc11B.1.1.70.000001
ORF1ab/nsp318Y18delTAC---11B.1.1.700.000341
ORF1ab/nsp318Y18XtaCtaA11B.1.1600.000031
ORF1ab/nsp318Y18YtaCtaT11B.1.160.160.000929
ORF1ab/nsp318Y18CtActGc11B.1.1770.000013
ORF1ab/nsp318Y18XtaCtaG11B.1.1770.000013
ORF1ab/nsp318Y18DTacGac11B.1.177.210.000076
ORF1ab/nsp318Y18CtActGc11B.1.177.210.000076
ORF1ab/nsp318Y18YtaCtaT11B.1.177.430.001477
ORF1ab/nsp318Y18delTAC---11B.1.177.510.004566
ORF1ab/nsp318Y18YtaCtaT11B.1.177.570.000281
ORF1ab/nsp318Y18YtaCtaT11B.1.177.620.001192
ORF1ab/nsp318Y18del1TaC-aT11B.1.177.730.000566
ORF1ab/nsp318Y18del1TaCGa-11B.1.20.000009
ORF1ab/nsp318Y18YtaCtaT11B.1.214.40.009091
ORF1ab/nsp318Y18YtaCtaT11B.1.2210.000071
ORF1ab/nsp318Y18HTacCac11B.1.2340.000132
ORF1ab/nsp318Y18YtaCtaT11B.1.2580.000067
ORF1ab/nsp318Y18CtActGc11B.1.2600.003344
ORF1ab/nsp318Y18YtaCtaT11B.1.351.20.000303
ORF1ab/nsp318Y18CtActGc11B.1.351.30.000876
ORF1ab/nsp318Y18YtaCtaT11B.1.36.160.001425
ORF1ab/nsp318Y18YtaCtaT11B.1.36.70.004
ORF1ab/nsp318Y18CtActGc11B.1.4160.001269
ORF1ab/nsp318Y18HTacCac11B.1.4270.00005
ORF1ab/nsp318Y18YtaCtaT11B.1.4270.00005
ORF1ab/nsp318Y18HTacCac11B.1.466.20.000391
ORF1ab/nsp318Y18YtaCtaT11B.1.4690.00361
ORF1ab/nsp318Y18HTacCac11B.1.4700.001404
ORF1ab/nsp318Y18YtaCtaT11B.1.5170.000427
ORF1ab/nsp318Y18delTAC---11B.1.5260.000024
ORF1ab/nsp318Y18delTAC---11B.1.5610.000397
ORF1ab/nsp318Y18YtaCtaT11B.1.5630.016949
ORF1ab/nsp318Y18YtaCtaT11B.1.5760.000907
ORF1ab/nsp318Y18XtaCtaG11B.1.5950.000261
ORF1ab/nsp318Y18FtActTc11B.1.617.20.000004
ORF1ab/nsp318Y18HTacCac11B.1.617.20.000004
ORF1ab/nsp318Y18delTAC---11B.1.621.10.000506
ORF1ab/nsp318Y18YtaCtaT11B.1.6280.000352
ORF1ab/nsp318Y18YtaCtaT11B.1.930.000934
ORF1ab/nsp318Y18YtaCtaT11B.400.000364
ORF1ab/nsp318Y18delTAC---11B.570.015152
ORF1ab/nsp318Y18YtaCtaT11C.370.000116
ORF1ab/nsp318Y18YtaCtaT11D.20.000075
ORF1ab/nsp318Y18YtaCtaT11N.50.001767
ORF1ab/nsp318Y18CtActGc11P.10.000016
ORF1ab/nsp318Y18YtaCtaT11P.1.120.000484
ORF1ab/nsp318Y18delTAC---11P.1.150.000232
ORF1ab/nsp318Y18YtaCtaT11P.1.70.000319
ORF1ab/nsp318Y18YtaCtaT11P.20.000187
ORF1ab/nsp318Y18YtaCtaT11Q.70.001111
ORF1ab/nsp318Y18del2TAc--c11R.10.00009
ORF1ab/nsp318Y18YtaCtaT11R.10.00009