CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 18 | Y18Y | Y836Y | syn | taC | taT | 2637 | 2637 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18C | Y836C | nonsyn | tAc | tGc | 315 | 315 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18H | Y836H | nonsyn | Tac | Cac | 125 | 123 | 0.984 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18H | Y836H | nonsyn | TaC | CaT | 125 | 2 | 0.016 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18del | Y836del | del | TAC | --- | 56 | 56 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18N | Y836N | nonsyn | Tac | Aac | 12 | 12 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18X | Y836X | nonsyn | taC | taG | 7 | 4 | 0.571429 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18X | Y836X | nonsyn | taC | taA | 7 | 3 | 0.428571 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18F | Y836F | nonsyn | tAc | tTc | 5 | 5 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18S | Y836S | nonsyn | tAc | tCc | 3 | 3 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18D | Y836D | nonsyn | Tac | Gac | 3 | 3 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18del1 | Y836del1 | del | TaC | -aT | 2 | 1 | 0.5 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18del1 | Y836del1 | del | TaC | Ga- | 2 | 1 | 0.5 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18L | Y836L | nonsyn | tAC | tTA | 2 | 1 | 0.5 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18L | Y836L | nonsyn | tAC | tTG | 2 | 1 | 0.5 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18R | Y836R | nonsyn | TAC | CGG | 1 | 1 | 1 | 2771-2773 |
ORF1ab/nsp3 | 18 | Y18del2 | Y836del2 | del | TAc | --c | 1 | 1 | 1 | 2771-2773 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2637 | 2637 | All | 0.000504 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 567 | 567 | AY.9.1 | 0.047472 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 492 | 492 | AY.99.2 | 0.045341 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 315 | 315 | All | 0.00006 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 293 | 293 | B.1.1.7 | 0.000262 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 259 | 259 | B.1.177.41 | 0.6475 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 159 | 159 | B.1.2 | 0.0014 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 123 | 125 | All | 0.000024 |
ORF1ab/nsp3 | 18 | Y18H | TaC | CaT | 2 | 125 | All | 0 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 112 | 112 | AY.119 | 0.003955 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 106 | 106 | AY.44 | 0.000645 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 103 | 103 | AY.4 | 0.00016 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 67 | 67 | B.1.617.2 | 0.000252 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 63 | 63 | B.1.1.7 | 0.000056 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 56 | 56 | All | 0.000011 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 55 | 55 | B.1.1.7 | 0.000049 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 50 | 50 | AY.4 | 0.000078 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 48 | 48 | B.1.351 | 0.001427 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 34 | 34 | AY.9.1 | 0.002847 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 33 | 33 | AY.43 | 0.000146 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 31 | 31 | B.1.36 | 0.004523 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 29 | 29 | AY.103 | 0.00018 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 19 | 19 | AY.46 | 0.001978 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 14 | 15 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 18 | Y18H | TaC | CaT | 1 | 15 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 10 | 10 | B.1.1.317 | 0.004117 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 10 | 10 | Q.1 | 0.001263 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 9 | 9 | B.1.36.22 | 0.01087 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 18 | Y18X | taC | taG | 4 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 18 | Y18X | taC | taA | 3 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 18 | Y18F | tAc | tTc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 5 | 5 | B.1.9.4 | 0.030675 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 18 | Y18D | Tac | Gac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 18 | Y18S | tAc | tCc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | AY.94 | 0.001328 |
ORF1ab/nsp3 | 18 | Y18X | taC | taA | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 18 | Y18X | taC | taG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 18 | Y18S | tAc | tCc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | AE.2 | 0.117647 |
ORF1ab/nsp3 | 18 | Y18del1 | TaC | Ga- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 18 | Y18L | tAC | tTA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 18 | Y18L | tAC | tTG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 18 | Y18del1 | TaC | -aT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp3 | 18 | Y18F | tAc | tTc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.36.28 | 0.011494 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 18 | Y18F | tAc | tTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 18 | Y18L | tAC | tTG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 18 | Y18X | taC | taG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 18 | Y18D | Tac | Gac | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 18 | Y18R | TAC | CGG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 18 | Y18del2 | TAc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18R | TAC | CGG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18L | tAC | tTA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 18 | Y18D | Tac | Gac | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 18 | Y18H | TaC | CaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 18 | Y18F | tAc | tTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 18 | Y18N | Tac | Aac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 18 | Y18S | tAc | tCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 18 | Y18X | taC | taA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 18 | Y18X | taC | taG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 18 | Y18D | Tac | Gac | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 18 | Y18del1 | TaC | -aT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 18 | Y18del1 | TaC | Ga- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.214.4 | 0.009091 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.563 | 0.016949 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 18 | Y18X | taC | taG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 18 | Y18F | tAc | tTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 18 | Y18H | Tac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 18 | Y18C | tAc | tGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 18 | Y18del | TAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 18 | Y18del2 | TAc | --c | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 18 | Y18Y | taC | taT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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