CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1791

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31791L1791LL2609LsynctCctT687466030.9605768090-8092
ORF1ab/nsp31791L1791LL2609LsynctCctA68742410.03505968090-8092
ORF1ab/nsp31791L1791LL2609LsynctCctG6874290.00421888090-8092
ORF1ab/nsp31791L1791LL2609LsynCtCTtA687410.0001454768090-8092
ORF1ab/nsp31791L1791FL2609FnonsynCtcTtc504150280.9974218090-8092
ORF1ab/nsp31791L1791FL2609FnonsynCtCTtT5041130.002578858090-8092
ORF1ab/nsp31791L1791IL2609InonsynCtcAtc22322318090-8092
ORF1ab/nsp31791L1791delL2609deldelCTC---787818090-8092
ORF1ab/nsp31791L1791HL2609HnonsyncTccAc494918090-8092
ORF1ab/nsp31791L1791VL2609VnonsynCtcGtc272718090-8092
ORF1ab/nsp31791L1791PL2609PnonsyncTccCc8818090-8092
ORF1ab/nsp31791L1791del1L2609del1delCtc-tc540.88090-8092
ORF1ab/nsp31791L1791del1L2609del1delCtC-tT510.28090-8092
ORF1ab/nsp31791L1791SL2609SnonsynCTCTCA320.6666678090-8092
ORF1ab/nsp31791L1791SL2609SnonsynCTcTCc310.3333338090-8092
ORF1ab/nsp31791L1791RL2609RnonsyncTccGc2218090-8092
ORF1ab/nsp31791L1791NL2609NnonsynCTcAAc1118090-8092

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31791L1791LctCctT66036874All0.001263
ORF1ab/nsp31791L1791LctCctA2416874All0.000046
ORF1ab/nsp31791L1791LctCctG296874All0.000006
ORF1ab/nsp31791L1791LCtCTtA16874All0
ORF1ab/nsp31791L1791FCtcTtc50285041All0.000962
ORF1ab/nsp31791L1791FCtCTtT135041All0.000002
ORF1ab/nsp31791L1791LctCctT12861310B.1.1.70.001151
ORF1ab/nsp31791L1791LctCctA171310B.1.1.70.000015
ORF1ab/nsp31791L1791LctCctG71310B.1.1.70.000006
ORF1ab/nsp31791L1791FCtcTtc10041004B.1.1.70.000899
ORF1ab/nsp31791L1791LctCctT926931AY.430.004103
ORF1ab/nsp31791L1791LctCctA5931AY.430.000022
ORF1ab/nsp31791L1791FCtcTtc912912AY.40.001419
ORF1ab/nsp31791L1791FCtcTtc327327AY.99.10.507764
ORF1ab/nsp31791L1791LctCctT294307AY.40.000458
ORF1ab/nsp31791L1791LctCctG11307AY.40.000017
ORF1ab/nsp31791L1791LctCctA2307AY.40.000003
ORF1ab/nsp31791L1791LctCctT294302B.1.617.20.001107
ORF1ab/nsp31791L1791LctCctA7302B.1.617.20.000026
ORF1ab/nsp31791L1791LctCctG1302B.1.617.20.000004
ORF1ab/nsp31791L1791LctCctT288288B.1.4270.014543
ORF1ab/nsp31791L1791LctCctT257264AY.1030.001596
ORF1ab/nsp31791L1791LctCctA7264AY.1030.000043
ORF1ab/nsp31791L1791LctCctT262262AH.30.996198
ORF1ab/nsp31791L1791ICtcAtc223223All0.000043
ORF1ab/nsp31791L1791FCtcTtc218218B.1.617.20.000821
ORF1ab/nsp31791L1791LctCctT202205AY.440.00123
ORF1ab/nsp31791L1791LctCctA3205AY.440.000018
ORF1ab/nsp31791L1791FCtcTtc205205B.1.258.170.021314
ORF1ab/nsp31791L1791LctCctT199200AY.30.001979
ORF1ab/nsp31791L1791LctCctA1200AY.30.00001
ORF1ab/nsp31791L1791LctCctT143145B.1.20.001259
ORF1ab/nsp31791L1791LctCctA2145B.1.20.000018
ORF1ab/nsp31791L1791LctCctT133141B.10.001218
ORF1ab/nsp31791L1791LctCctA8141B.10.000073
ORF1ab/nsp31791L1791LctCctT138138AY.50.00285
ORF1ab/nsp31791L1791LctCctT136136B.1.177.60.132812
ORF1ab/nsp31791L1791LctCctT120120AY.4.50.012899
ORF1ab/nsp31791L1791LctCctT112118P.10.001764
ORF1ab/nsp31791L1791LctCctA5118P.10.000079
ORF1ab/nsp31791L1791LctCctG1118P.10.000016
ORF1ab/nsp31791L1791FCtcTtc113113B.1.1770.001488
ORF1ab/nsp31791L1791LctCctT101103AY.250.000607
ORF1ab/nsp31791L1791LctCctA2103AY.250.000012
ORF1ab/nsp31791L1791FCtcTtc102102AY.1030.000633
ORF1ab/nsp31791L1791FCtcTtc9797B.520.979798
ORF1ab/nsp31791L1791ICtcAtc9696B.1.5250.010863
ORF1ab/nsp31791L1791FCtcTtc9595AY.430.000421
ORF1ab/nsp31791L1791FCtcTtc8787B.1.3510.002586
ORF1ab/nsp31791L1791FCtcTtc8686AY.30.000855
ORF1ab/nsp31791L1791FCtcTtc8484P.10.001323
ORF1ab/nsp31791L1791delCTC---7878All0.000015
ORF1ab/nsp31791L1791FCtcTtc7878B.1.20.000687
ORF1ab/nsp31791L1791LctCctA7176B.1.1.280.022098
ORF1ab/nsp31791L1791LctCctT576B.1.1.280.001556
ORF1ab/nsp31791L1791FCtcTtc7474B.1.5260.001739
ORF1ab/nsp31791L1791LctCctT7272B.1.1.3110.025788
ORF1ab/nsp31791L1791FCtcTtc6969AY.250.000415
ORF1ab/nsp31791L1791LctCctT6666B.1.10.001197
ORF1ab/nsp31791L1791FCtcTtc6666B.1.177.741
ORF1ab/nsp31791L1791LctCctT6666B.1.5260.001551
ORF1ab/nsp31791L1791LctCctT6263AY.1000.002852
ORF1ab/nsp31791L1791LctCctA163AY.1000.000046
ORF1ab/nsp31791L1791LctCctT6363AY.200.002449
ORF1ab/nsp31791L1791FCtcTtc6363AY.440.000383
ORF1ab/nsp31791L1791LctCctT5563B.1.1770.000724
ORF1ab/nsp31791L1791LctCctA863B.1.1770.000105
ORF1ab/nsp31791L1791LctCctA6062AY.39.10.002377
ORF1ab/nsp31791L1791LctCctT262AY.39.10.000079
ORF1ab/nsp31791L1791LctCctT5858B.1.177.210.004435
ORF1ab/nsp31791L1791FCtcTtc5252AY.340.005042
ORF1ab/nsp31791L1791HcTccAc4949All0.000009
ORF1ab/nsp31791L1791FCtcTtc4848B.1.1.2220.009792
ORF1ab/nsp31791L1791FCtcTtc4242AY.1000.001932
ORF1ab/nsp31791L1791LctCctT4040B.1.36.80.04
ORF1ab/nsp31791L1791FCtcTtc4040XA0.888889
ORF1ab/nsp31791L1791LctCctT3939AY.9.20.001432
ORF1ab/nsp31791L1791FCtcTtc3939B.1.438.10.004183
ORF1ab/nsp31791L1791LctCctT3737B.1.2580.002462
ORF1ab/nsp31791L1791FCtcTtc3636B.1.4270.001818
ORF1ab/nsp31791L1791LctCctT3636B.1.595.30.947368
ORF1ab/nsp31791L1791LctCctT3435AY.290.000536
ORF1ab/nsp31791L1791LctCctG135AY.290.000016
ORF1ab/nsp31791L1791delCTC---3535B.1.1.70.000031
ORF1ab/nsp31791L1791LctCctT3333B.1.6210.002921
ORF1ab/nsp31791L1791FCtcTtc3232B.1.4290.000753
ORF1ab/nsp31791L1791FCtcTtc3131AY.1020.000822
ORF1ab/nsp31791L1791LctCctT3131AY.350.007224
ORF1ab/nsp31791L1791FCtcTtc3131AY.4.20.000672
ORF1ab/nsp31791L1791LctCctT3030B.1.177.550.06993
ORF1ab/nsp31791L1791FCtcTtc3030C.36.3.10.081522
ORF1ab/nsp31791L1791LctCctT2929R.10.00261
ORF1ab/nsp31791L1791FCtcTtc2828B.10.000256
ORF1ab/nsp31791L1791FCtcTtc2828B.1.1.2140.001553
ORF1ab/nsp31791L1791FCtcTtc2828B.1.177.670.21374
ORF1ab/nsp31791L1791VCtcGtc2727All0.000005
ORF1ab/nsp31791L1791LctCctT2727B.1.1.5190.001072
ORF1ab/nsp31791L1791LctCctT2525AY.130.004024
ORF1ab/nsp31791L1791LctCctT2224AY.390.000544
ORF1ab/nsp31791L1791LctCctA224AY.390.000049
ORF1ab/nsp31791L1791FCtcTtc2424B.1.10.000435
ORF1ab/nsp31791L1791FCtcTtc2424B.1.1.2160.021371
ORF1ab/nsp31791L1791FCtcTtc2424B.1.1600.000749
ORF1ab/nsp31791L1791LctCctT2424B.1.6370.001754
ORF1ab/nsp31791L1791FCtcTtc2323AY.260.000651
ORF1ab/nsp31791L1791LctCctT2023AY.260.000566
ORF1ab/nsp31791L1791LctCctG223AY.260.000057
ORF1ab/nsp31791L1791LctCctA123AY.260.000028
ORF1ab/nsp31791L1791HcTccAc2323B.1.617.20.000087
ORF1ab/nsp31791L1791FCtcTtc2222B.1.177.600.004806
ORF1ab/nsp31791L1791LctCctT2222B.1.2310.709677
ORF1ab/nsp31791L1791LctCctT2020B.1.4290.000471
ORF1ab/nsp31791L1791LctCctT2020C.360.018215
ORF1ab/nsp31791L1791FCtcTtc2020P.1.140.000956
ORF1ab/nsp31791L1791ICtcAtc1919AY.1030.000118
ORF1ab/nsp31791L1791LctCctT1919AY.4.20.000412
ORF1ab/nsp31791L1791LctCctT1618AY.1020.000424
ORF1ab/nsp31791L1791LctCctA218AY.1020.000053
ORF1ab/nsp31791L1791FCtcTtc1818AZ.20.014778
ORF1ab/nsp31791L1791LctCctT1818B.1.258.170.001871
ORF1ab/nsp31791L1791FCtcTtc1818B.1.6210.001593
ORF1ab/nsp31791L1791LctCctT1717AY.230.001186
ORF1ab/nsp31791L1791FCtcTtc1717AY.60.000699
ORF1ab/nsp31791L1791LctCctT1717Q.30.002466
ORF1ab/nsp31791L1791LctCctT1616B.1.1.2220.003264
ORF1ab/nsp31791L1791FCtcTtc1616B.1.2210.001137
ORF1ab/nsp31791L1791FCtcTtc1515AY.1040.029762
ORF1ab/nsp31791L1791FCtcTtc1515AY.290.000237
ORF1ab/nsp31791L1791LctCctT1014AY.1190.000353
ORF1ab/nsp31791L1791LctCctA414AY.1190.000141
ORF1ab/nsp31791L1791LctCctT1414AY.470.000435
ORF1ab/nsp31791L1791FCtcTtc1414AY.90.000946
ORF1ab/nsp31791L1791FCtcTtc1414B.1.1.3110.005014
ORF1ab/nsp31791L1791FCtcTtc1414B.1.1.440.033735
ORF1ab/nsp31791L1791FCtcTtc1414B.1.1.5190.000556
ORF1ab/nsp31791L1791FCtcTtc1313B0.001662
ORF1ab/nsp31791L1791LctCctT1313B.1.3510.000386
ORF1ab/nsp31791L1791FCtcTtc1212AY.200.000466
ORF1ab/nsp31791L1791FCtcTtc1212AY.460.001249
ORF1ab/nsp31791L1791FCtcTtc1212AY.50.000248
ORF1ab/nsp31791L1791LctCctT1212AY.640.007143
ORF1ab/nsp31791L1791LctCctT1212B.1.1.4320.01519
ORF1ab/nsp31791L1791LctCctT1012B.1.1600.000312
ORF1ab/nsp31791L1791LctCctA212B.1.1600.000062
ORF1ab/nsp31791L1791FCtCTtT1212B.1.177.60.011719
ORF1ab/nsp31791L1791FCtcTtc1212B.1.3690.003423
ORF1ab/nsp31791L1791LctCctT1111AY.340.001067
ORF1ab/nsp31791L1791HcTccAc1111AY.46.50.002183
ORF1ab/nsp31791L1791LctCctT1111AY.590.005826
ORF1ab/nsp31791L1791FCtcTtc1111AY.98.10.000533
ORF1ab/nsp31791L1791LctCctT1111B.1.1.5260.039007
ORF1ab/nsp31791L1791ICtcAtc1111B.1.1.70.00001
ORF1ab/nsp31791L1791FCtcTtc1111B.1.177.810.002083
ORF1ab/nsp31791L1791FCtcTtc1111B.1.177.860.002018
ORF1ab/nsp31791L1791ICtcAtc1111B.1.2340.001451
ORF1ab/nsp31791L1791FCtcTtc1111B.1.2430.000765
ORF1ab/nsp31791L1791LctCctT1111B.1.3460.014417
ORF1ab/nsp31791L1791LctCctT1011B.1.360.001459
ORF1ab/nsp31791L1791LctCctA111B.1.360.000146
ORF1ab/nsp31791L1791LctCctT1111B.1.6270.022222
ORF1ab/nsp31791L1791VCtcGtc1111B.1.6370.000804
ORF1ab/nsp31791L1791FCtcTtc1010AY.1190.000353
ORF1ab/nsp31791L1791FCtcTtc1010AY.230.000697
ORF1ab/nsp31791L1791FCtcTtc1010AY.39.1.10.007246
ORF1ab/nsp31791L1791FCtcTtc1010AY.470.000311
ORF1ab/nsp31791L1791LctCctT1010AY.98.10.000484
ORF1ab/nsp31791L1791VCtcGtc1010B.1.1.5190.000397
ORF1ab/nsp31791L1791FCtcTtc1010B.1.360.001459
ORF1ab/nsp31791L1791LctCctT910B.1.5960.000784
ORF1ab/nsp31791L1791LctCctA110B.1.5960.000087
ORF1ab/nsp31791L1791LctCctT1010P.1.120.00484
ORF1ab/nsp31791L1791LctCctT1010P.30.015949
ORF1ab/nsp31791L1791LctCctT99AY.400.008679
ORF1ab/nsp31791L1791ICtcAtc99AY.430.00004
ORF1ab/nsp31791L1791LctCctT99AY.460.000937
ORF1ab/nsp31791L1791FCtcTtc99AY.46.60.00065
ORF1ab/nsp31791L1791FCtcTtc99AY.750.000504
ORF1ab/nsp31791L1791FCtcTtc99AY.980.000711
ORF1ab/nsp31791L1791LctCctT89B.1.1.4340.002788
ORF1ab/nsp31791L1791LctCctA19B.1.1.4340.000349
ORF1ab/nsp31791L1791LctCctT99B.1.1.500.00611
ORF1ab/nsp31791L1791LctCctT99B.1.1.620.243243
ORF1ab/nsp31791L1791LctCctT99B.1.2210.000639
ORF1ab/nsp31791L1791FCtcTtc99B.1.5750.002731
ORF1ab/nsp31791L1791FCtcTtc99B.1.5960.000784
ORF1ab/nsp31791L1791PcTccCc88All0.000002
ORF1ab/nsp31791L1791FCtcTtc88AY.1130.001139
ORF1ab/nsp31791L1791LctCctA48AY.1180.000251
ORF1ab/nsp31791L1791LctCctT48AY.1180.000251
ORF1ab/nsp31791L1791FCtcTtc88AY.330.000534
ORF1ab/nsp31791L1791LctCctT88AY.420.000322
ORF1ab/nsp31791L1791FCtcTtc88AY.450.000973
ORF1ab/nsp31791L1791LctCctT88AY.980.000632
ORF1ab/nsp31791L1791ICtcAtc88B.1.1.5190.000318
ORF1ab/nsp31791L1791FCtcTtc88B.1.5250.000905
ORF1ab/nsp31791L1791LctCctT77AY.320.003727
ORF1ab/nsp31791L1791HcTccAc77AY.40.000011
ORF1ab/nsp31791L1791ICtcAtc77AY.40.000011
ORF1ab/nsp31791L1791FCtcTtc77AY.9.20.000257
ORF1ab/nsp31791L1791LctCctT77B.1.1.2300.06422
ORF1ab/nsp31791L1791LctCctT77B.1.1.330.002946
ORF1ab/nsp31791L1791FCtcTtc77B.1.2580.000466
ORF1ab/nsp31791L1791FCtcTtc77B.1.4000.003003
ORF1ab/nsp31791L1791LctCctT77P.1.170.001132
ORF1ab/nsp31791L1791FCtcTtc66A.2.50.002994
ORF1ab/nsp31791L1791LctCctT66A.210.01662
ORF1ab/nsp31791L1791FCtcTtc66AY.1200.000223
ORF1ab/nsp31791L1791LctCctT66AY.46.50.00119
ORF1ab/nsp31791L1791LctCctT56AY.46.60.000361
ORF1ab/nsp31791L1791LctCctA16AY.46.60.000072
ORF1ab/nsp31791L1791LctCctT66AY.5.30.002024
ORF1ab/nsp31791L1791LctCctT66B.1.1.2290.034483
ORF1ab/nsp31791L1791LctCctT66B.1.1.2410.012422
ORF1ab/nsp31791L1791LctCctT66B.1.1.3710.0625
ORF1ab/nsp31791L1791LctCctT66B.1.2430.000418
ORF1ab/nsp31791L1791LctCctT66B.1.3110.001647
ORF1ab/nsp31791L1791LctCctT66B.1.36.290.003104
ORF1ab/nsp31791L1791FCtcTtc66B.1.3960.004234
ORF1ab/nsp31791L1791FCtcTtc66B.1.4970.001889
ORF1ab/nsp31791L1791FCtcTtc66B.1.5880.00546
ORF1ab/nsp31791L1791FCtcTtc66B.1.6200.005676
ORF1ab/nsp31791L1791del1Ctc-tc45All0.000001
ORF1ab/nsp31791L1791del1CtC-tT15All0
ORF1ab/nsp31791L1791FCtcTtc55AY.1160.001434
ORF1ab/nsp31791L1791LctCctT55AY.1170.000423
ORF1ab/nsp31791L1791FCtcTtc55AY.1170.000423
ORF1ab/nsp31791L1791ICtcAtc55AY.1200.000186
ORF1ab/nsp31791L1791LctCctT55AY.1210.000677
ORF1ab/nsp31791L1791ICtcAtc55AY.250.00003
ORF1ab/nsp31791L1791FCtcTtc55AY.3.10.000426
ORF1ab/nsp31791L1791LctCctT55AY.330.000334
ORF1ab/nsp31791L1791delCTC---55AY.40.000008
ORF1ab/nsp31791L1791FCtcTtc55AY.420.000201
ORF1ab/nsp31791L1791ICtcAtc55AY.440.00003
ORF1ab/nsp31791L1791LctCctT45AY.450.000487
ORF1ab/nsp31791L1791LctCctG15AY.450.000122
ORF1ab/nsp31791L1791LctCctT45AY.750.000224
ORF1ab/nsp31791L1791LctCctA15AY.750.000056
ORF1ab/nsp31791L1791LctCctT55AY.75.10.000902
ORF1ab/nsp31791L1791LctCctT45B0.000511
ORF1ab/nsp31791L1791LctCctA15B0.000128
ORF1ab/nsp31791L1791LctCctT55B.1.1.10.001633
ORF1ab/nsp31791L1791ICtcAtc55B.1.1770.000066
ORF1ab/nsp31791L1791FCtcTtc55B.1.177.440.002595
ORF1ab/nsp31791L1791ICtcAtc55B.1.4290.000118
ORF1ab/nsp31791L1791LctCctT55B.1.4480.013123
ORF1ab/nsp31791L1791LctCctT55B.1.5740.010753
ORF1ab/nsp31791L1791LctCctT55B.1.5950.001305
ORF1ab/nsp31791L1791FCtcTtc55B.1.6370.000365
ORF1ab/nsp31791L1791LctCctT55B.6.60.004444
ORF1ab/nsp31791L1791LctCctT35D.20.000225
ORF1ab/nsp31791L1791LctCctA25D.20.00015
ORF1ab/nsp31791L1791LctCctT44A.10.001127
ORF1ab/nsp31791L1791FCtcTtc44AY.1180.000251
ORF1ab/nsp31791L1791LctCctT44AY.3.10.000341
ORF1ab/nsp31791L1791FCtcTtc44AY.390.000099
ORF1ab/nsp31791L1791LctCctT44AY.46.40.000658
ORF1ab/nsp31791L1791LctCctT44AY.60.000165
ORF1ab/nsp31791L1791FCtcTtc44AY.610.000419
ORF1ab/nsp31791L1791LctCctT44AY.610.000419
ORF1ab/nsp31791L1791LctCctT44AY.700.000834
ORF1ab/nsp31791L1791ICtcAtc44AY.750.000224
ORF1ab/nsp31791L1791LctCctT44AY.90.00027
ORF1ab/nsp31791L1791FCtcTtc44AZ.30.006079
ORF1ab/nsp31791L1791delCTC---44B.10.000037
ORF1ab/nsp31791L1791FCtcTtc44B.1.1.1700.004988
ORF1ab/nsp31791L1791LctCctT44B.1.1.2430.016327
ORF1ab/nsp31791L1791FCtcTtc44B.1.1.280.001245
ORF1ab/nsp31791L1791LctCctA34B.1.1.3220.026316
ORF1ab/nsp31791L1791LctCctT14B.1.1.3220.008772
ORF1ab/nsp31791L1791LctCctT44B.1.1.370.000771
ORF1ab/nsp31791L1791HcTccAc44B.1.1.70.000004
ORF1ab/nsp31791L1791FCtcTtc44B.1.110.30.002874
ORF1ab/nsp31791L1791FCtcTtc44B.1.177.570.001124
ORF1ab/nsp31791L1791FCtcTtc44B.1.2360.008214
ORF1ab/nsp31791L1791LctCctT44B.1.3960.002823
ORF1ab/nsp31791L1791LctCctT44B.1.617.10.000516
ORF1ab/nsp31791L1791LctCctT44B.6.30.105263
ORF1ab/nsp31791L1791LctCctT44C.160.004242
ORF1ab/nsp31791L1791FCtcTtc44C.370.000464
ORF1ab/nsp31791L1791LctCctT44C.370.000464
ORF1ab/nsp31791L1791ICtcAtc44P.10.000063
ORF1ab/nsp31791L1791FCtcTtc44P.1.100.001078
ORF1ab/nsp31791L1791FCtcTtc44R.10.00036
ORF1ab/nsp31791L1791LctCctT33A.2.50.001497
ORF1ab/nsp31791L1791SCTCTCA23All0
ORF1ab/nsp31791L1791SCTcTCc13All0
ORF1ab/nsp31791L1791FCtcTtc33AY.10.001187
ORF1ab/nsp31791L1791LctCctA33AY.1130.000427
ORF1ab/nsp31791L1791LctCctT33AY.1160.00086
ORF1ab/nsp31791L1791LctCctT33AY.1200.000112
ORF1ab/nsp31791L1791FCtcTtc33AY.130.000483
ORF1ab/nsp31791L1791LctCctT33AY.140.000264
ORF1ab/nsp31791L1791LctCctT33AY.16.10.00141
ORF1ab/nsp31791L1791LctCctT33AY.190.003421
ORF1ab/nsp31791L1791FCtcTtc33AY.300.001187
ORF1ab/nsp31791L1791FCtcTtc33AY.39.10.000119
ORF1ab/nsp31791L1791delCTC---33AY.4.50.000322
ORF1ab/nsp31791L1791ICtcAtc33AY.460.000312
ORF1ab/nsp31791L1791LctCctT33AY.5.40.00083
ORF1ab/nsp31791L1791LctCctT33AY.540.000286
ORF1ab/nsp31791L1791FCtcTtc33AY.640.001786
ORF1ab/nsp31791L1791LctCctT33AY.670.001393
ORF1ab/nsp31791L1791FCtcTtc33AY.700.000626
ORF1ab/nsp31791L1791LctCctT33AY.820.004071
ORF1ab/nsp31791L1791LctCctT33AY.99.20.000276
ORF1ab/nsp31791L1791FCtcTtc33AY.99.20.000276
ORF1ab/nsp31791L1791delCTC---33B.1.10.000054
ORF1ab/nsp31791L1791ICtcAtc33B.1.10.000054
ORF1ab/nsp31791L1791LctCctT33B.1.1.2580.009772
ORF1ab/nsp31791L1791LctCctT33B.1.1.2680.044776
ORF1ab/nsp31791L1791LctCctT33B.1.1.2840.000322
ORF1ab/nsp31791L1791FCtcTtc33B.1.1.3060.001315
ORF1ab/nsp31791L1791FCtcTtc33B.1.1.3260.005282
ORF1ab/nsp31791L1791FCtcTtc33B.1.1.3480.002389
ORF1ab/nsp31791L1791FCtcTtc33B.1.1.370.000579
ORF1ab/nsp31791L1791del1Ctc-tc33B.1.1.70.000003
ORF1ab/nsp31791L1791VCtcGtc33B.1.1.70.000003
ORF1ab/nsp31791L1791FCtcTtc33B.1.1.700.001023
ORF1ab/nsp31791L1791LctCctT23B.1.1.700.000682
ORF1ab/nsp31791L1791LctCctA13B.1.1.700.000341
ORF1ab/nsp31791L1791delCTC---33B.1.1770.00004
ORF1ab/nsp31791L1791FCtcTtc33B.1.177.210.000229
ORF1ab/nsp31791L1791LctCctT33B.1.177.40.000633
ORF1ab/nsp31791L1791FCtcTtc33B.1.177.520.005272
ORF1ab/nsp31791L1791FCtcTtc33B.1.177.70.000495
ORF1ab/nsp31791L1791LctCctT33B.1.177.860.00055
ORF1ab/nsp31791L1791LctCctT33B.1.2060.002447
ORF1ab/nsp31791L1791LctCctT33B.1.3690.000856
ORF1ab/nsp31791L1791LctCctG33B.1.4000.001287
ORF1ab/nsp31791L1791LctCctT33B.1.4620.021739
ORF1ab/nsp31791L1791FCtcTtc33B.1.5170.001281
ORF1ab/nsp31791L1791LctCctT33B.1.5250.000339
ORF1ab/nsp31791L1791LctCctT33B.1.5600.013889
ORF1ab/nsp31791L1791FCtcTtc33B.1.5950.000783
ORF1ab/nsp31791L1791FCtcTtc33C.350.002322
ORF1ab/nsp31791L1791LctCctT33P.1.140.000143
ORF1ab/nsp31791L1791LctCctT33P.1.150.000697
ORF1ab/nsp31791L1791LctCctT33P.1.70.000958
ORF1ab/nsp31791L1791LctCctT33P.20.00056
ORF1ab/nsp31791L1791FCtcTtc33Q.40.001364
ORF1ab/nsp31791L1791FCtcTtc22AL.10.025974
ORF1ab/nsp31791L1791RcTccGc22All0
ORF1ab/nsp31791L1791LctCctT22AY.10.000791
ORF1ab/nsp31791L1791LctCctT22AY.1010.000981
ORF1ab/nsp31791L1791LctCctT22AY.1070.000932
ORF1ab/nsp31791L1791LctCctT22AY.1080.002205
ORF1ab/nsp31791L1791LctCctT22AY.1140.000462
ORF1ab/nsp31791L1791LctCctT22AY.120.10.000642
ORF1ab/nsp31791L1791FCtcTtc22AY.1210.000271
ORF1ab/nsp31791L1791LctCctT22AY.160.000759
ORF1ab/nsp31791L1791FCtcTtc22AY.23.10.000835
ORF1ab/nsp31791L1791ICtcAtc22AY.30.00002
ORF1ab/nsp31791L1791FCtcTtc22AY.34.10.00102
ORF1ab/nsp31791L1791FCtcTtc22AY.370.000632
ORF1ab/nsp31791L1791LctCctT22AY.370.000632
ORF1ab/nsp31791L1791delCTC---22AY.430.000009
ORF1ab/nsp31791L1791SCTCTCA12AY.440.000006
ORF1ab/nsp31791L1791SCTcTCc12AY.440.000006
ORF1ab/nsp31791L1791FCtcTtc22AY.46.40.000329
ORF1ab/nsp31791L1791ICtcAtc22AY.46.50.000397
ORF1ab/nsp31791L1791FCtcTtc22AY.5.30.000675
ORF1ab/nsp31791L1791FCtcTtc22AY.540.000191
ORF1ab/nsp31791L1791FCtcTtc22AY.590.001059
ORF1ab/nsp31791L1791FCtcTtc22AY.620.000871
ORF1ab/nsp31791L1791FCtcTtc22AY.900.001369
ORF1ab/nsp31791L1791FCtcTtc22B.1.1.10.000653
ORF1ab/nsp31791L1791FCtcTtc22B.1.1.1280.014184
ORF1ab/nsp31791L1791FCtcTtc22B.1.1.1410.004024
ORF1ab/nsp31791L1791LctCctT22B.1.1.1610.007067
ORF1ab/nsp31791L1791LctCctT22B.1.1.2140.000111
ORF1ab/nsp31791L1791FCtcTtc22B.1.1.2280.006098
ORF1ab/nsp31791L1791LctCctT22B.1.1.250.001137
ORF1ab/nsp31791L1791LctCctT22B.1.1.2560.027397
ORF1ab/nsp31791L1791LctCctG22B.1.1.2630.003115
ORF1ab/nsp31791L1791LctCctT22B.1.1.2940.002532
ORF1ab/nsp31791L1791LctCctT12B.1.1.3060.000438
ORF1ab/nsp31791L1791LctCctA12B.1.1.3060.000438
ORF1ab/nsp31791L1791LctCctT22B.1.1.3180.000604
ORF1ab/nsp31791L1791FCtcTtc22B.1.1.3290.007692
ORF1ab/nsp31791L1791LctCctT22B.1.1.4640.002946
ORF1ab/nsp31791L1791FCtcTtc12B.1.1.620.027027
ORF1ab/nsp31791L1791FCtCTtT12B.1.1.620.027027
ORF1ab/nsp31791L1791FCtcTtc22B.1.1.630.000772
ORF1ab/nsp31791L1791LctCctT22B.1.110.30.001437
ORF1ab/nsp31791L1791FCtcTtc22B.1.177.110.003396
ORF1ab/nsp31791L1791delCTC---22B.1.177.160.001329
ORF1ab/nsp31791L1791FCtcTtc22B.1.177.40.000422
ORF1ab/nsp31791L1791FCtcTtc22B.1.177.400.010309
ORF1ab/nsp31791L1791LctCctT22B.1.177.540.001213
ORF1ab/nsp31791L1791LctCctT22B.1.177.70.00033
ORF1ab/nsp31791L1791LctCctT22B.1.177.820.000955
ORF1ab/nsp31791L1791FCtcTtc22B.1.1990.008264
ORF1ab/nsp31791L1791ICtcAtc22B.1.20.000018
ORF1ab/nsp31791L1791FCtcTtc22B.1.2130.029851
ORF1ab/nsp31791L1791LctCctT22B.1.220.002635
ORF1ab/nsp31791L1791FCtcTtc22B.1.2340.000264
ORF1ab/nsp31791L1791ICtcAtc22B.1.2400.000431
ORF1ab/nsp31791L1791FCtcTtc22B.1.258.30.00335
ORF1ab/nsp31791L1791LctCctT22B.1.258.40.006897
ORF1ab/nsp31791L1791FCtcTtc22B.1.3130.013158
ORF1ab/nsp31791L1791FCtcTtc22B.1.3490.00143
ORF1ab/nsp31791L1791FCtcTtc22B.1.36.170.000988
ORF1ab/nsp31791L1791FCtcTtc22B.1.36.90.006431
ORF1ab/nsp31791L1791FCtcTtc22B.1.3600.025316
ORF1ab/nsp31791L1791FCtcTtc22B.1.3980.005952
ORF1ab/nsp31791L1791FCtcTtc22B.1.5650.001621
ORF1ab/nsp31791L1791LctCctT22B.1.6090.000959
ORF1ab/nsp31791L1791FCtcTtc22B.1.617.10.000258
ORF1ab/nsp31791L1791delCTC---22B.1.617.20.000008
ORF1ab/nsp31791L1791FCtcTtc22B.1.6230.001073
ORF1ab/nsp31791L1791FCtcTtc22B.1.6250.004706
ORF1ab/nsp31791L1791LctCctT22B.1.6280.000705
ORF1ab/nsp31791L1791FCtcTtc22C.36.10.008299
ORF1ab/nsp31791L1791LctCctT22N.100.058824
ORF1ab/nsp31791L1791FCtcTtc22P.1.150.000465
ORF1ab/nsp31791L1791LctCctT22P.1.60.003891
ORF1ab/nsp31791L1791LctCctT22P.40.007605
ORF1ab/nsp31791L1791PcTccCc110.055556
ORF1ab/nsp31791L1791LctCctA11A0.000387
ORF1ab/nsp31791L1791FCtcTtc11A.2.20.001689
ORF1ab/nsp31791L1791LctCctT11A.2.5.20.001572
ORF1ab/nsp31791L1791LctCctT11A.23.10.000704
ORF1ab/nsp31791L1791FCtcTtc11A.23.10.000704
ORF1ab/nsp31791L1791LctCctT11A.250.018182
ORF1ab/nsp31791L1791FCtcTtc11A.50.001923
ORF1ab/nsp31791L1791FCtcTtc11AD.20.000219
ORF1ab/nsp31791L1791LctCctT11AE.80.000489
ORF1ab/nsp31791L1791NCTcAAc11All0
ORF1ab/nsp31791L1791FCtcTtc11AY.100.00053
ORF1ab/nsp31791L1791ICtcAtc11AY.1000.000046
ORF1ab/nsp31791L1791LctCctA11AY.1040.001984
ORF1ab/nsp31791L1791FCtcTtc11AY.1050.000643
ORF1ab/nsp31791L1791ICtcAtc11AY.1070.000466
ORF1ab/nsp31791L1791FCtcTtc11AY.1080.001103
ORF1ab/nsp31791L1791LctCctT11AY.1090.00074
ORF1ab/nsp31791L1791FCtcTtc11AY.1090.00074
ORF1ab/nsp31791L1791delCTC---11AY.1110.000183
ORF1ab/nsp31791L1791FCtcTtc11AY.1110.000183
ORF1ab/nsp31791L1791FCtcTtc11AY.1140.000231
ORF1ab/nsp31791L1791HcTccAc11AY.116.10.000311
ORF1ab/nsp31791L1791HcTccAc11AY.1190.000035
ORF1ab/nsp31791L1791LctCctA11AY.120.000316
ORF1ab/nsp31791L1791FCtcTtc11AY.120.000316
ORF1ab/nsp31791L1791delCTC---11AY.190.00114
ORF1ab/nsp31791L1791LctCctT11AY.20.000356
ORF1ab/nsp31791L1791PcTccCc11AY.200.000039
ORF1ab/nsp31791L1791LctCctT11AY.240.000431
ORF1ab/nsp31791L1791FCtcTtc11AY.270.000065
ORF1ab/nsp31791L1791ICtcAtc11AY.29.10.000221
ORF1ab/nsp31791L1791FCtcTtc11AY.320.000532
ORF1ab/nsp31791L1791delCTC---11AY.330.000067
ORF1ab/nsp31791L1791LctCctT11AY.360.000148
ORF1ab/nsp31791L1791FCtcTtc11AY.360.000148
ORF1ab/nsp31791L1791LctCctT11AY.380.000499
ORF1ab/nsp31791L1791ICtcAtc11AY.390.000025
ORF1ab/nsp31791L1791VCtcGtc11AY.40.000002
ORF1ab/nsp31791L1791ICtcAtc11AY.4.20.000022
ORF1ab/nsp31791L1791FCtcTtc11AY.4.2.10.000149
ORF1ab/nsp31791L1791FCtcTtc11AY.4.50.000107
ORF1ab/nsp31791L1791LctCctT11AY.410.000294
ORF1ab/nsp31791L1791ICtcAtc11AY.420.00004
ORF1ab/nsp31791L1791VCtcGtc11AY.430.000004
ORF1ab/nsp31791L1791del1CtC-tT11AY.440.000006
ORF1ab/nsp31791L1791delCTC---11AY.46.20.000635
ORF1ab/nsp31791L1791ICtcAtc11AY.50.000021
ORF1ab/nsp31791L1791RcTccGc11AY.50.000021
ORF1ab/nsp31791L1791LctCctA11AY.520.000814
ORF1ab/nsp31791L1791FCtcTtc11AY.530.000288
ORF1ab/nsp31791L1791LctCctT11AY.550.000917
ORF1ab/nsp31791L1791ICtcAtc11AY.590.00053
ORF1ab/nsp31791L1791PcTccCc11AY.590.00053
ORF1ab/nsp31791L1791LctCctT11AY.650.000533
ORF1ab/nsp31791L1791FCtcTtc11AY.690.000187
ORF1ab/nsp31791L1791LctCctT11AY.7.10.000113
ORF1ab/nsp31791L1791LctCctT11AY.7.20.000559
ORF1ab/nsp31791L1791LctCctT11AY.710.000475
ORF1ab/nsp31791L1791FCtcTtc11AY.710.000475
ORF1ab/nsp31791L1791delCTC---11AY.720.001361
ORF1ab/nsp31791L1791FCtcTtc11AY.730.000665
ORF1ab/nsp31791L1791FCtcTtc11AY.820.001357
ORF1ab/nsp31791L1791FCtcTtc11AY.850.000427
ORF1ab/nsp31791L1791LctCctT11AY.870.000833
ORF1ab/nsp31791L1791FCtcTtc11AY.870.000833
ORF1ab/nsp31791L1791ICtcAtc11AY.90.000068
ORF1ab/nsp31791L1791LctCctT11AY.9.10.000084
ORF1ab/nsp31791L1791LctCctT11AY.940.000443
ORF1ab/nsp31791L1791LctCctT11AY.950.000761
ORF1ab/nsp31791L1791PcTccCc11AY.950.000761
ORF1ab/nsp31791L1791FCtcTtc11AY.970.001701
ORF1ab/nsp31791L1791HcTccAc11B0.000128
ORF1ab/nsp31791L1791ICtcAtc11B.10.000009
ORF1ab/nsp31791L1791VCtcGtc11B.1.10.000018
ORF1ab/nsp31791L1791LctCctT11B.1.1.100.001115
ORF1ab/nsp31791L1791LctCctT11B.1.1.1170.009709
ORF1ab/nsp31791L1791LctCctT11B.1.1.120.007463
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.1290.009174
ORF1ab/nsp31791L1791LctCctT11B.1.1.1410.002012
ORF1ab/nsp31791L1791LctCctT11B.1.1.1700.001247
ORF1ab/nsp31791L1791LctCctT11B.1.1.1760.000439
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.1940.00495
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.1980.001468
ORF1ab/nsp31791L1791LctCctT11B.1.1.2100.005714
ORF1ab/nsp31791L1791LctCctT11B.1.1.2250.007194
ORF1ab/nsp31791L1791LctCctT11B.1.1.2310.003096
ORF1ab/nsp31791L1791delCTC---11B.1.1.2360.006897
ORF1ab/nsp31791L1791LctCctT11B.1.1.2540.011236
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.2630.001558
ORF1ab/nsp31791L1791LctCctT11B.1.1.270.00565
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.2840.000107
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.2960.018182
ORF1ab/nsp31791L1791LctCctT11B.1.1.3010.001179
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3010.001179
ORF1ab/nsp31791L1791LctCctT11B.1.1.3040.002809
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3050.003861
ORF1ab/nsp31791L1791LctCctT11B.1.1.3050.003861
ORF1ab/nsp31791L1791delCTC---11B.1.1.3060.000438
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3090.005848
ORF1ab/nsp31791L1791delCTC---11B.1.1.3150.008475
ORF1ab/nsp31791L1791LctCctT11B.1.1.3170.000412
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3180.000302
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.330.000421
ORF1ab/nsp31791L1791LctCctT11B.1.1.3360.016667
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3440.010753
ORF1ab/nsp31791L1791LctCctA11B.1.1.3480.000796
ORF1ab/nsp31791L1791LctCctT11B.1.1.3540.004386
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3660.015873
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3680.003086
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3690.000446
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3700.012658
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.3720.000689
ORF1ab/nsp31791L1791LctCctT11B.1.1.3740.002375
ORF1ab/nsp31791L1791LctCctT11B.1.1.390.00051
ORF1ab/nsp31791L1791LctCctT11B.1.1.4020.011111
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.4160.000905
ORF1ab/nsp31791L1791LctCctT11B.1.1.4160.000905
ORF1ab/nsp31791L1791LctCctT11B.1.1.4190.007407
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.4230.0625
ORF1ab/nsp31791L1791LctCctT11B.1.1.4480.002033
ORF1ab/nsp31791L1791delCTC---11B.1.1.460.004367
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.4860.001577
ORF1ab/nsp31791L1791FCtcTtc11B.1.1.5230.001563
ORF1ab/nsp31791L1791LctCctT11B.1.1.530.013699
ORF1ab/nsp31791L1791NCTcAAc11B.1.1.70.000001
ORF1ab/nsp31791L1791delCTC---11B.1.1.700.000341
ORF1ab/nsp31791L1791LctCctT11B.1.1110.001175
ORF1ab/nsp31791L1791FCtcTtc11B.1.1280.000635
ORF1ab/nsp31791L1791delCTC---11B.1.1400.018868
ORF1ab/nsp31791L1791FCtcTtc11B.1.1460.004237
ORF1ab/nsp31791L1791LctCctT11B.1.1490.003425
ORF1ab/nsp31791L1791FCtcTtc11B.1.1580.02381
ORF1ab/nsp31791L1791LctCctT11B.1.160.260.002421
ORF1ab/nsp31791L1791FCtcTtc11B.1.1700.00431
ORF1ab/nsp31791L1791PcTccCc11B.1.1770.000013
ORF1ab/nsp31791L1791LctCctT11B.1.177.120.000152
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.160.000664
ORF1ab/nsp31791L1791delCTC---11B.1.177.180.00116
ORF1ab/nsp31791L1791LctCctT11B.1.177.320.00135
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.420.000894
ORF1ab/nsp31791L1791LctCctA11B.1.177.420.000894
ORF1ab/nsp31791L1791LctCctT11B.1.177.440.000519
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.500.004695
ORF1ab/nsp31791L1791delCTC---11B.1.177.60.000977
ORF1ab/nsp31791L1791LctCctT11B.1.177.600.000218
ORF1ab/nsp31791L1791LctCctT11B.1.177.620.001192
ORF1ab/nsp31791L1791delCTC---11B.1.177.620.001192
ORF1ab/nsp31791L1791HcTccAc11B.1.177.620.001192
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.650.000665
ORF1ab/nsp31791L1791LctCctT11B.1.177.650.000665
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.730.000566
ORF1ab/nsp31791L1791LctCctT11B.1.177.750.001041
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.770.000726
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.80.000752
ORF1ab/nsp31791L1791LctCctT11B.1.177.810.000189
ORF1ab/nsp31791L1791FCtcTtc11B.1.177.820.000477
ORF1ab/nsp31791L1791ICtcAtc11B.1.2210.000071
ORF1ab/nsp31791L1791SCTCTCA11B.1.221.40.004167
ORF1ab/nsp31791L1791FCtcTtc11B.1.2320.000537
ORF1ab/nsp31791L1791LctCctT11B.1.2340.000132
ORF1ab/nsp31791L1791LctCctT11B.1.2390.001221
ORF1ab/nsp31791L1791FCtcTtc11B.1.2400.000216
ORF1ab/nsp31791L1791LctCctT11B.1.2400.000216
ORF1ab/nsp31791L1791LctCctA11B.1.240.10.025
ORF1ab/nsp31791L1791delCTC---11B.1.2420.018868
ORF1ab/nsp31791L1791LctCctT11B.1.2560.017241
ORF1ab/nsp31791L1791FCtcTtc11B.1.258.110.000396
ORF1ab/nsp31791L1791FCtcTtc11B.1.2800.007143
ORF1ab/nsp31791L1791LctCctT11B.1.2980.002114
ORF1ab/nsp31791L1791LctCctA11B.1.3010.005917
ORF1ab/nsp31791L1791FCtcTtc11B.1.3110.000275
ORF1ab/nsp31791L1791LctCctT11B.1.3200.001245
ORF1ab/nsp31791L1791LctCctA11B.1.3380.008621
ORF1ab/nsp31791L1791LctCctT11B.1.3400.004292
ORF1ab/nsp31791L1791LctCctT11B.1.351.30.000876
ORF1ab/nsp31791L1791FCtcTtc11B.1.36.180.00042
ORF1ab/nsp31791L1791delCTC---11B.1.36.180.00042
ORF1ab/nsp31791L1791FCtcTtc11B.1.36.310.001751
ORF1ab/nsp31791L1791FCtcTtc11B.1.36.360.000602
ORF1ab/nsp31791L1791LctCctT11B.1.3670.000792
ORF1ab/nsp31791L1791PcTccCc11B.1.3690.000285
ORF1ab/nsp31791L1791FCtcTtc11B.1.3710.001122
ORF1ab/nsp31791L1791FCtcTtc11B.1.3910.001127
ORF1ab/nsp31791L1791LctCctT11B.1.3990.001934
ORF1ab/nsp31791L1791ICtcAtc11B.1.4000.000429
ORF1ab/nsp31791L1791LctCctT11B.1.4040.001302
ORF1ab/nsp31791L1791FCtcTtc11B.1.4150.014286
ORF1ab/nsp31791L1791LctCctA11B.1.4240.008065
ORF1ab/nsp31791L1791FCtcTtc11B.1.4250.002994
ORF1ab/nsp31791L1791LctCctT11B.1.4280.00102
ORF1ab/nsp31791L1791FCtcTtc11B.1.4560.003268
ORF1ab/nsp31791L1791LctCctT11B.1.4660.023256
ORF1ab/nsp31791L1791LctCctT11B.1.466.20.000391
ORF1ab/nsp31791L1791FCtcTtc11B.1.466.20.000391
ORF1ab/nsp31791L1791LctCctT11B.1.4690.00361
ORF1ab/nsp31791L1791LctCctT11B.1.4730.019231
ORF1ab/nsp31791L1791FCtcTtc11B.1.4790.038462
ORF1ab/nsp31791L1791PcTccCc11B.1.4970.000315
ORF1ab/nsp31791L1791FCtcTtc11B.1.4990.00105
ORF1ab/nsp31791L1791LctCctT11B.1.4990.00105
ORF1ab/nsp31791L1791LctCctT11B.1.5090.000866
ORF1ab/nsp31791L1791FCtcTtc11B.1.5090.000866
ORF1ab/nsp31791L1791del1Ctc-tc11B.1.5380.008065
ORF1ab/nsp31791L1791LctCctT11B.1.5460.003704
ORF1ab/nsp31791L1791FCtcTtc11B.1.5460.003704
ORF1ab/nsp31791L1791LctCctT11B.1.5610.000397
ORF1ab/nsp31791L1791FCtcTtc11B.1.5610.000397
ORF1ab/nsp31791L1791FCtcTtc11B.1.5640.000426
ORF1ab/nsp31791L1791FCtcTtc11B.1.564.10.001577
ORF1ab/nsp31791L1791LctCctT11B.1.5650.00081
ORF1ab/nsp31791L1791LctCctT11B.1.5690.014493
ORF1ab/nsp31791L1791LctCctT11B.1.5760.000907
ORF1ab/nsp31791L1791FCtcTtc11B.1.5760.000907
ORF1ab/nsp31791L1791LctCctT11B.1.5820.000491
ORF1ab/nsp31791L1791LctCctT11B.1.5870.001898
ORF1ab/nsp31791L1791PcTccCc11B.1.5960.000087
ORF1ab/nsp31791L1791FCtcTtc11B.1.6090.000479
ORF1ab/nsp31791L1791LctCctT11B.1.6150.04
ORF1ab/nsp31791L1791RcTccGc11B.1.617.20.000004
ORF1ab/nsp31791L1791ICtcAtc11B.1.617.20.000004
ORF1ab/nsp31791L1791LctCctA11B.1.6230.000536
ORF1ab/nsp31791L1791LctCctT11B.1.6250.002353
ORF1ab/nsp31791L1791FCtcTtc11B.1.6280.000352
ORF1ab/nsp31791L1791delCTC---11B.1.6380.052632
ORF1ab/nsp31791L1791ICtcAtc11B.290.003509
ORF1ab/nsp31791L1791LctCctT11B.290.003509
ORF1ab/nsp31791L1791FCtcTtc11B.30.000831
ORF1ab/nsp31791L1791FCtcTtc11B.4.10.018868
ORF1ab/nsp31791L1791LctCctT11B.400.000364
ORF1ab/nsp31791L1791FCtcTtc11B.560.028571
ORF1ab/nsp31791L1791LctCctT11B.60.00091
ORF1ab/nsp31791L1791FCtcTtc11B.6.60.000889
ORF1ab/nsp31791L1791FCtcTtc11C.180.002591
ORF1ab/nsp31791L1791LctCctT11C.180.002591
ORF1ab/nsp31791L1791LctCctT11C.20.016129
ORF1ab/nsp31791L1791FCtcTtc11C.230.005814
ORF1ab/nsp31791L1791LctCctT11C.270.018519
ORF1ab/nsp31791L1791LCtCTtA11C.350.000774
ORF1ab/nsp31791L1791ICtcAtc11C.360.000911
ORF1ab/nsp31791L1791FCtcTtc11D.20.000075
ORF1ab/nsp31791L1791FCtcTtc11N.30.005814
ORF1ab/nsp31791L1791LctCctT11P.1.100.000269
ORF1ab/nsp31791L1791FCtcTtc11P.1.170.000162
ORF1ab/nsp31791L1791FCtcTtc11P.20.000187
ORF1ab/nsp31791L1791delCTC---11Q.10.000126
ORF1ab/nsp31791L1791LctCctT11Q.10.000126
ORF1ab/nsp31791L1791FCtcTtc11Q.30.000145
ORF1ab/nsp31791L1791FCtcTtc11Q.80.000165
ORF1ab/nsp31791L1791delCTC---11U.30.003861
ORF1ab/nsp31791L1791FCtcTtc11W.20.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.