CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | ctC | ctT | 6874 | 6603 | 0.960576 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | ctC | ctA | 6874 | 241 | 0.0350596 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | ctC | ctG | 6874 | 29 | 0.0042188 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791L | L2609L | syn | CtC | TtA | 6874 | 1 | 0.000145476 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791F | L2609F | nonsyn | Ctc | Ttc | 5041 | 5028 | 0.997421 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791F | L2609F | nonsyn | CtC | TtT | 5041 | 13 | 0.00257885 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791I | L2609I | nonsyn | Ctc | Atc | 223 | 223 | 1 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791del | L2609del | del | CTC | --- | 78 | 78 | 1 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791H | L2609H | nonsyn | cTc | cAc | 49 | 49 | 1 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791V | L2609V | nonsyn | Ctc | Gtc | 27 | 27 | 1 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791P | L2609P | nonsyn | cTc | cCc | 8 | 8 | 1 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791del1 | L2609del1 | del | Ctc | -tc | 5 | 4 | 0.8 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791del1 | L2609del1 | del | CtC | -tT | 5 | 1 | 0.2 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791S | L2609S | nonsyn | CTC | TCA | 3 | 2 | 0.666667 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791S | L2609S | nonsyn | CTc | TCc | 3 | 1 | 0.333333 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791R | L2609R | nonsyn | cTc | cGc | 2 | 2 | 1 | 8090-8092 |
ORF1ab/nsp3 | 1791 | L1791N | L2609N | nonsyn | CTc | AAc | 1 | 1 | 1 | 8090-8092 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6603 | 6874 | All | 0.001263 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 241 | 6874 | All | 0.000046 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 29 | 6874 | All | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791L | CtC | TtA | 1 | 6874 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5028 | 5041 | All | 0.000962 |
ORF1ab/nsp3 | 1791 | L1791F | CtC | TtT | 13 | 5041 | All | 0.000002 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1286 | 1310 | B.1.1.7 | 0.001151 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 17 | 1310 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 7 | 1310 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1004 | 1004 | B.1.1.7 | 0.000899 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 926 | 931 | AY.43 | 0.004103 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 5 | 931 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 912 | 912 | AY.4 | 0.001419 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 327 | 327 | AY.99.1 | 0.507764 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 294 | 307 | AY.4 | 0.000458 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 11 | 307 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 307 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 294 | 302 | B.1.617.2 | 0.001107 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 7 | 302 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 302 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 288 | 288 | B.1.427 | 0.014543 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 257 | 264 | AY.103 | 0.001596 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 7 | 264 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 262 | 262 | AH.3 | 0.996198 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 223 | 223 | All | 0.000043 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 218 | 218 | B.1.617.2 | 0.000821 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 202 | 205 | AY.44 | 0.00123 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 3 | 205 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 205 | 205 | B.1.258.17 | 0.021314 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 199 | 200 | AY.3 | 0.001979 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 200 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 143 | 145 | B.1.2 | 0.001259 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 145 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 133 | 141 | B.1 | 0.001218 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 8 | 141 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 138 | 138 | AY.5 | 0.00285 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 136 | 136 | B.1.177.6 | 0.132812 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 120 | 120 | AY.4.5 | 0.012899 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 112 | 118 | P.1 | 0.001764 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 5 | 118 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 118 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 113 | 113 | B.1.177 | 0.001488 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 101 | 103 | AY.25 | 0.000607 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 103 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 102 | 102 | AY.103 | 0.000633 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 97 | 97 | B.52 | 0.979798 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 96 | 96 | B.1.525 | 0.010863 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 95 | 95 | AY.43 | 0.000421 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 87 | 87 | B.1.351 | 0.002586 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 86 | 86 | AY.3 | 0.000855 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 84 | 84 | P.1 | 0.001323 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 78 | 78 | All | 0.000015 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 78 | 78 | B.1.2 | 0.000687 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 71 | 76 | B.1.1.28 | 0.022098 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 76 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 74 | 74 | B.1.526 | 0.001739 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 72 | 72 | B.1.1.311 | 0.025788 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 69 | 69 | AY.25 | 0.000415 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 66 | 66 | B.1.1 | 0.001197 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 66 | 66 | B.1.177.74 | 1 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 66 | 66 | B.1.526 | 0.001551 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 62 | 63 | AY.100 | 0.002852 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 63 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 63 | 63 | AY.20 | 0.002449 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 63 | 63 | AY.44 | 0.000383 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 55 | 63 | B.1.177 | 0.000724 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 8 | 63 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 60 | 62 | AY.39.1 | 0.002377 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 62 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 58 | 58 | B.1.177.21 | 0.004435 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 52 | 52 | AY.34 | 0.005042 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 49 | 49 | All | 0.000009 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 48 | 48 | B.1.1.222 | 0.009792 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 42 | 42 | AY.100 | 0.001932 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 40 | 40 | B.1.36.8 | 0.04 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 40 | 40 | XA | 0.888889 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 39 | 39 | AY.9.2 | 0.001432 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 39 | 39 | B.1.438.1 | 0.004183 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 37 | 37 | B.1.258 | 0.002462 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 36 | 36 | B.1.427 | 0.001818 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 36 | 36 | B.1.595.3 | 0.947368 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 34 | 35 | AY.29 | 0.000536 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 35 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 33 | 33 | B.1.621 | 0.002921 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 32 | 32 | B.1.429 | 0.000753 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 31 | 31 | AY.102 | 0.000822 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 31 | 31 | AY.35 | 0.007224 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 31 | 31 | AY.4.2 | 0.000672 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 30 | 30 | B.1.177.55 | 0.06993 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 30 | 30 | C.36.3.1 | 0.081522 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 29 | 29 | R.1 | 0.00261 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 28 | 28 | B.1.1.214 | 0.001553 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 28 | 28 | B.1.177.67 | 0.21374 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 27 | 27 | All | 0.000005 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 27 | 27 | B.1.1.519 | 0.001072 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 25 | 25 | AY.13 | 0.004024 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 22 | 24 | AY.39 | 0.000544 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 24 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 24 | 24 | B.1.1.216 | 0.021371 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 24 | 24 | B.1.637 | 0.001754 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 20 | 23 | AY.26 | 0.000566 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 2 | 23 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 23 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 22 | 22 | B.1.177.60 | 0.004806 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 22 | 22 | B.1.231 | 0.709677 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 20 | 20 | C.36 | 0.018215 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 20 | 20 | P.1.14 | 0.000956 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 16 | 18 | AY.102 | 0.000424 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 18 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 18 | 18 | AZ.2 | 0.014778 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 18 | 18 | B.1.258.17 | 0.001871 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 17 | 17 | Q.3 | 0.002466 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 16 | 16 | B.1.1.222 | 0.003264 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 15 | 15 | AY.104 | 0.029762 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 14 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 4 | 14 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | AY.9 | 0.000946 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | B.1.1.311 | 0.005014 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | B.1.1.44 | 0.033735 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 13 | 13 | B | 0.001662 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 13 | 13 | B.1.351 | 0.000386 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 12 | 12 | AY.64 | 0.007143 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 12 | 12 | B.1.1.432 | 0.01519 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 12 | B.1.160 | 0.000312 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 12 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1791 | L1791F | CtC | TtT | 12 | 12 | B.1.177.6 | 0.011719 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | AY.34 | 0.001067 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 11 | 11 | AY.46.5 | 0.002183 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | AY.59 | 0.005826 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | B.1.1.526 | 0.039007 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | B.1.346 | 0.014417 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 11 | B.1.36 | 0.001459 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 11 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 11 | 11 | B.1.627 | 0.022222 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.39.1.1 | 0.007246 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 10 | B.1.596 | 0.000784 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 10 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 10 | 10 | P.3 | 0.015949 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | AY.40 | 0.008679 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 8 | 9 | B.1.1.434 | 0.002788 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 9 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | B.1.1.62 | 0.243243 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | AY.113 | 0.001139 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 4 | 8 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 8 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | AY.32 | 0.003727 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | B.1.1.230 | 0.06422 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | A.21 | 0.01662 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 6 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 6 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.1.229 | 0.034483 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.1.241 | 0.012422 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.1.371 | 0.0625 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.497 | 0.001889 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.588 | 0.00546 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 6 | 6 | B.1.620 | 0.005676 |
ORF1ab/nsp3 | 1791 | L1791del1 | Ctc | -tc | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1791 | L1791del1 | CtC | -tT | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 5 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 1 | 5 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 5 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 5 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.448 | 0.013123 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.574 | 0.010753 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 5 | 5 | B.6.6 | 0.004444 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 5 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 2 | 5 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | AZ.3 | 0.006079 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.1.243 | 0.016327 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 3 | 4 | B.1.1.322 | 0.026316 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 4 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | B.1.236 | 0.008214 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | B.6.3 | 0.105263 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1791 | L1791S | CTC | TCA | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791S | CTc | TCc | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.19 | 0.003421 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.1.258 | 0.009772 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.1.268 | 0.044776 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 1791 | L1791del1 | Ctc | -tc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 3 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 3 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AL.1 | 0.025974 |
ORF1ab/nsp3 | 1791 | L1791R | cTc | cGc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1791 | L1791S | CTC | TCA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791S | CTc | TCc | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.256 | 0.027397 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctG | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.329 | 0.007692 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 2 | B.1.1.62 | 0.027027 |
ORF1ab/nsp3 | 1791 | L1791F | CtC | TtT | 1 | 2 | B.1.1.62 | 0.027027 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.213 | 0.029851 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.313 | 0.013158 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.36.9 | 0.006431 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.360 | 0.025316 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | C.36.1 | 0.008299 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | N.10 | 0.058824 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1791 | L1791N | CTc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1791 | L1791del1 | CtC | -tT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1791 | L1791R | cTc | cGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1791 | L1791V | Ctc | Gtc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.296 | 0.018182 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.423 | 0.0625 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 1791 | L1791N | CTc | AAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1791 | L1791H | cTc | cAc | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1791 | L1791S | CTC | TCA | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.240.1 | 0.025 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.256 | 0.017241 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.479 | 0.038462 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1791 | L1791del1 | Ctc | -tc | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1791 | L1791P | cTc | cCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.615 | 0.04 |
ORF1ab/nsp3 | 1791 | L1791R | cTc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp3 | 1791 | L1791L | CtC | TtA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1791 | L1791I | Ctc | Atc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1791 | L1791L | ctC | ctT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1791 | L1791del | CTC | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1791 | L1791F | Ctc | Ttc | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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