CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 179 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3179N179NN997NsynaaTaaC8129812913254-3256

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3179N179NaaTaaC81298129All0.001555
ORF1ab/nsp3179N179NaaTaaC45594559AD.20.998248
ORF1ab/nsp3179N179NaaTaaC26132613B.1.1.70.002339
ORF1ab/nsp3179N179NaaTaaC240240AD.10.987654
ORF1ab/nsp3179N179NaaTaaC112112AY.40.000174
ORF1ab/nsp3179N179NaaTaaC104104B.1.1.3150.881356
ORF1ab/nsp3179N179NaaTaaC5858B.10.000531
ORF1ab/nsp3179N179NaaTaaC5555B.1.10.000998
ORF1ab/nsp3179N179NaaTaaC3535P.1.100.009431
ORF1ab/nsp3179N179NaaTaaC2929B.1.617.20.000109
ORF1ab/nsp3179N179NaaTaaC2222AD.2.11
ORF1ab/nsp3179N179NaaTaaC1717B.1.1770.000224
ORF1ab/nsp3179N179NaaTaaC1717B.1.20.00015
ORF1ab/nsp3179N179NaaTaaC1111AY.200.000428
ORF1ab/nsp3179N179NaaTaaC1010AY.1020.000265
ORF1ab/nsp3179N179NaaTaaC1010B.1.1.3050.03861
ORF1ab/nsp3179N179NaaTaaC1010B.1.2210.00071
ORF1ab/nsp3179N179NaaTaaC1010B.1.351.50.005995
ORF1ab/nsp3179N179NaaTaaC1010B.1.5260.000235
ORF1ab/nsp3179N179NaaTaaC99AY.1030.000056
ORF1ab/nsp3179N179NaaTaaC88AY.30.00008
ORF1ab/nsp3179N179NaaTaaC88AY.430.000035
ORF1ab/nsp3179N179NaaTaaC88B.1.258.170.000832
ORF1ab/nsp3179N179NaaTaaC77AY.440.000043
ORF1ab/nsp3179N179NaaTaaC77AY.98.10.000339
ORF1ab/nsp3179N179NaaTaaC66B.1.2580.000399
ORF1ab/nsp3179N179NaaTaaC55B.1.1.5190.000199
ORF1ab/nsp3179N179NaaTaaC55B.1.2430.000348
ORF1ab/nsp3179N179NaaTaaC55C.370.00058
ORF1ab/nsp3179N179NaaTaaC44B.1.5820.001963
ORF1ab/nsp3179N179NaaTaaC44C.170.222222
ORF1ab/nsp3179N179NaaTaaC44P.10.000063
ORF1ab/nsp3179N179NaaTaaC44Q.80.00066
ORF1ab/nsp3179N179NaaTaaC33A.2.5.10.014423
ORF1ab/nsp3179N179NaaTaaC33AY.260.000085
ORF1ab/nsp3179N179NaaTaaC33AY.290.000047
ORF1ab/nsp3179N179NaaTaaC33AY.390.000074
ORF1ab/nsp3179N179NaaTaaC33AY.4.20.000065
ORF1ab/nsp3179N179NaaTaaC33AY.50.000062
ORF1ab/nsp3179N179NaaTaaC33AY.690.00056
ORF1ab/nsp3179N179NaaTaaC33AY.750.000168
ORF1ab/nsp3179N179NaaTaaC33AY.9.20.00011
ORF1ab/nsp3179N179NaaTaaC33B.1.1600.000094
ORF1ab/nsp3179N179NaaTaaC33C.360.002732
ORF1ab/nsp3179N179NaaTaaC22AY.1050.001286
ORF1ab/nsp3179N179NaaTaaC22AY.116.10.000623
ORF1ab/nsp3179N179NaaTaaC22AY.1190.000071
ORF1ab/nsp3179N179NaaTaaC22AY.1210.000271
ORF1ab/nsp3179N179NaaTaaC22AY.230.000139
ORF1ab/nsp3179N179NaaTaaC22AY.250.000012
ORF1ab/nsp3179N179NaaTaaC22AY.4.2.10.000298
ORF1ab/nsp3179N179NaaTaaC22AY.470.000062
ORF1ab/nsp3179N179NaaTaaC22B.1.1.2910.001485
ORF1ab/nsp3179N179NaaTaaC22B.1.1.3370.007194
ORF1ab/nsp3179N179NaaTaaC22B.1.1.4640.002946
ORF1ab/nsp3179N179NaaTaaC22B.1.177.100.001756
ORF1ab/nsp3179N179NaaTaaC22B.1.177.570.000562
ORF1ab/nsp3179N179NaaTaaC22B.1.177.730.001133
ORF1ab/nsp3179N179NaaTaaC22B.1.2340.000264
ORF1ab/nsp3179N179NaaTaaC22B.1.6280.000705
ORF1ab/nsp3179N179NaaTaaC22B.1.6370.000146
ORF1ab/nsp3179N179NaaTaaC22Q.30.00029
ORF1ab/nsp3179N179NaaTaaC11A.2.50.000499
ORF1ab/nsp3179N179NaaTaaC11AP.10.001502
ORF1ab/nsp3179N179NaaTaaC11AY.1000.000046
ORF1ab/nsp3179N179NaaTaaC11AY.1040.001984
ORF1ab/nsp3179N179NaaTaaC11AY.1060.000335
ORF1ab/nsp3179N179NaaTaaC11AY.1110.000183
ORF1ab/nsp3179N179NaaTaaC11AY.1130.000142
ORF1ab/nsp3179N179NaaTaaC11AY.1170.000085
ORF1ab/nsp3179N179NaaTaaC11AY.1180.000063
ORF1ab/nsp3179N179NaaTaaC11AY.1200.000037
ORF1ab/nsp3179N179NaaTaaC11AY.120.10.000321
ORF1ab/nsp3179N179NaaTaaC11AY.140.000088
ORF1ab/nsp3179N179NaaTaaC11AY.280.00189
ORF1ab/nsp3179N179NaaTaaC11AY.29.10.000221
ORF1ab/nsp3179N179NaaTaaC11AY.3.10.000085
ORF1ab/nsp3179N179NaaTaaC11AY.330.000067
ORF1ab/nsp3179N179NaaTaaC11AY.360.000148
ORF1ab/nsp3179N179NaaTaaC11AY.380.000499
ORF1ab/nsp3179N179NaaTaaC11AY.39.10.00004
ORF1ab/nsp3179N179NaaTaaC11AY.400.000964
ORF1ab/nsp3179N179NaaTaaC11AY.420.00004
ORF1ab/nsp3179N179NaaTaaC11AY.46.40.000165
ORF1ab/nsp3179N179NaaTaaC11AY.5.40.000277
ORF1ab/nsp3179N179NaaTaaC11AY.610.000105
ORF1ab/nsp3179N179NaaTaaC11AY.740.000116
ORF1ab/nsp3179N179NaaTaaC11AY.90.000068
ORF1ab/nsp3179N179NaaTaaC11AY.980.000079
ORF1ab/nsp3179N179NaaTaaC11AY.990.001049
ORF1ab/nsp3179N179NaaTaaC11B0.000128
ORF1ab/nsp3179N179NaaTaaC11B.1.1.2200.001859
ORF1ab/nsp3179N179NaaTaaC11B.1.1.250.000569
ORF1ab/nsp3179N179NaaTaaC11B.1.1.2530.002506
ORF1ab/nsp3179N179NaaTaaC11B.1.1.3000.010753
ORF1ab/nsp3179N179NaaTaaC11B.1.1.330.000421
ORF1ab/nsp3179N179NaaTaaC11B.1.1.3690.000446
ORF1ab/nsp3179N179NaaTaaC11B.1.1.370.000193
ORF1ab/nsp3179N179NaaTaaC11B.1.1.4090.002833
ORF1ab/nsp3179N179NaaTaaC11B.1.1.500.000679
ORF1ab/nsp3179N179NaaTaaC11B.1.1570.002985
ORF1ab/nsp3179N179NaaTaaC11B.1.177.330.001645
ORF1ab/nsp3179N179NaaTaaC11B.1.2320.000537
ORF1ab/nsp3179N179NaaTaaC11B.1.3190.003049
ORF1ab/nsp3179N179NaaTaaC11B.1.3750.00082
ORF1ab/nsp3179N179NaaTaaC11B.1.3890.001002
ORF1ab/nsp3179N179NaaTaaC11B.1.3980.002976
ORF1ab/nsp3179N179NaaTaaC11B.1.4260.001009
ORF1ab/nsp3179N179NaaTaaC11B.1.5500.013699
ORF1ab/nsp3179N179NaaTaaC11B.1.5770.000687
ORF1ab/nsp3179N179NaaTaaC11B.1.5800.004065
ORF1ab/nsp3179N179NaaTaaC11B.1.5960.000087
ORF1ab/nsp3179N179NaaTaaC11B.290.003509
ORF1ab/nsp3179N179NaaTaaC11B.6.60.000889
ORF1ab/nsp3179N179NaaTaaC11C.10.002392
ORF1ab/nsp3179N179NaaTaaC11P.1.130.000898

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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