CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 179

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3179N179NN997NsynaaTaaC8129812913254-3256
ORF1ab/nsp3179N179SN997SnonsynaAtaGt35235213254-3256
ORF1ab/nsp3179N179YN997YnonsynAatTat28528513254-3256
ORF1ab/nsp3179N179KN997KnonsynaaTaaG1501280.8533333254-3256
ORF1ab/nsp3179N179KN997KnonsynaaTaaA150220.1466673254-3256
ORF1ab/nsp3179N179DN997DnonsynAatGat898913254-3256
ORF1ab/nsp3179N179delN997deldelAAT---727213254-3256
ORF1ab/nsp3179N179TN997TnonsynaAtaCt616113254-3256
ORF1ab/nsp3179N179HN997HnonsynAatCat222213254-3256
ORF1ab/nsp3179N179IN997InonsynaAtaTt870.8753254-3256
ORF1ab/nsp3179N179IN997InonsynaATaTC810.1253254-3256
ORF1ab/nsp3179N179del1N997del1delAat-at3313254-3256

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3179N179NaaTaaC81298129All0.001555
ORF1ab/nsp3179N179NaaTaaC45594559AD.20.998248
ORF1ab/nsp3179N179NaaTaaC26132613B.1.1.70.002339
ORF1ab/nsp3179N179SaAtaGt352352All0.000067
ORF1ab/nsp3179N179YAatTat285285All0.000055
ORF1ab/nsp3179N179NaaTaaC240240AD.10.987654
ORF1ab/nsp3179N179SaAtaGt177177AY.30.001761
ORF1ab/nsp3179N179KaaTaaG128150All0.000024
ORF1ab/nsp3179N179KaaTaaA22150All0.000004
ORF1ab/nsp3179N179NaaTaaC112112AY.40.000174
ORF1ab/nsp3179N179NaaTaaC104104B.1.1.3150.881356
ORF1ab/nsp3179N179YAatTat9292AY.230.006417
ORF1ab/nsp3179N179DAatGat8989All0.000017
ORF1ab/nsp3179N179YAatTat8585B.1.617.20.00032
ORF1ab/nsp3179N179delAAT---7272All0.000014
ORF1ab/nsp3179N179TaAtaCt6161All0.000012
ORF1ab/nsp3179N179NaaTaaC5858B.10.000531
ORF1ab/nsp3179N179NaaTaaC5555B.1.10.000998
ORF1ab/nsp3179N179SaAtaGt4444B.1.1.70.000039
ORF1ab/nsp3179N179SaAtaGt4444B.1.20.000387
ORF1ab/nsp3179N179KaaTaaG4444B.1.5250.004979
ORF1ab/nsp3179N179YAatTat4040B.1.1.70.000036
ORF1ab/nsp3179N179NaaTaaC3535P.1.100.009431
ORF1ab/nsp3179N179DAatGat3232B.1.1.70.000029
ORF1ab/nsp3179N179NaaTaaC2929B.1.617.20.000109
ORF1ab/nsp3179N179KaaTaaG2526B.1.1.70.000022
ORF1ab/nsp3179N179KaaTaaA126B.1.1.70.000001
ORF1ab/nsp3179N179NaaTaaC2222AD.2.11
ORF1ab/nsp3179N179HAatCat2222All0.000004
ORF1ab/nsp3179N179TaAtaCt2222B.1.1.70.00002
ORF1ab/nsp3179N179SaAtaGt2121B.1.617.20.000079
ORF1ab/nsp3179N179KaaTaaG2020B.1.617.20.000075
ORF1ab/nsp3179N179DAatGat1717AY.40.000026
ORF1ab/nsp3179N179NaaTaaC1717B.1.1770.000224
ORF1ab/nsp3179N179NaaTaaC1717B.1.20.00015
ORF1ab/nsp3179N179delAAT---1414B.1.1.70.000013
ORF1ab/nsp3179N179DAatGat1212AY.1030.000075
ORF1ab/nsp3179N179SaAtaGt1212AY.430.000053
ORF1ab/nsp3179N179NaaTaaC1111AY.200.000428
ORF1ab/nsp3179N179KaaTaaG1111AY.430.000049
ORF1ab/nsp3179N179TaAtaCt1111B.10.000101
ORF1ab/nsp3179N179DAatGat1111B.10.000101
ORF1ab/nsp3179N179NaaTaaC1010AY.1020.000265
ORF1ab/nsp3179N179NaaTaaC1010B.1.1.3050.03861
ORF1ab/nsp3179N179NaaTaaC1010B.1.2210.00071
ORF1ab/nsp3179N179NaaTaaC1010B.1.351.50.005995
ORF1ab/nsp3179N179NaaTaaC1010B.1.5260.000235
ORF1ab/nsp3179N179NaaTaaC99AY.1030.000056
ORF1ab/nsp3179N179YAatTat99AY.250.000054
ORF1ab/nsp3179N179KaaTaaA99AY.39.10.000357
ORF1ab/nsp3179N179SaAtaGt99AY.4.50.000967
ORF1ab/nsp3179N179HAatCat99B.1.1.70.000008
ORF1ab/nsp3179N179IaAtaTt78All0.000001
ORF1ab/nsp3179N179IaATaTC18All0
ORF1ab/nsp3179N179SaAtaGt88AY.1190.000282
ORF1ab/nsp3179N179NaaTaaC88AY.30.00008
ORF1ab/nsp3179N179NaaTaaC88AY.430.000035
ORF1ab/nsp3179N179NaaTaaC88B.1.258.170.000832
ORF1ab/nsp3179N179SaAtaGt77AY.40.000011
ORF1ab/nsp3179N179NaaTaaC77AY.440.000043
ORF1ab/nsp3179N179NaaTaaC77AY.98.10.000339
ORF1ab/nsp3179N179TaAtaCt66AY.290.000095
ORF1ab/nsp3179N179KaaTaaG66AY.440.000037
ORF1ab/nsp3179N179KaaTaaG66B.1.1.5190.000238
ORF1ab/nsp3179N179NaaTaaC66B.1.2580.000399
ORF1ab/nsp3179N179delAAT---55AY.1000.00023
ORF1ab/nsp3179N179YAatTat55AY.1080.005513
ORF1ab/nsp3179N179HAatCat55AY.250.00003
ORF1ab/nsp3179N179YAatTat55AY.890.02451
ORF1ab/nsp3179N179NaaTaaC55B.1.1.5190.000199
ORF1ab/nsp3179N179NaaTaaC55B.1.2430.000348
ORF1ab/nsp3179N179NaaTaaC55C.370.00058
ORF1ab/nsp3179N179SaAtaGt44AY.250.000024
ORF1ab/nsp3179N179KaaTaaA34AY.30.00003
ORF1ab/nsp3179N179KaaTaaG14AY.30.00001
ORF1ab/nsp3179N179delAAT---44AY.440.000024
ORF1ab/nsp3179N179YAatTat44AY.440.000024
ORF1ab/nsp3179N179delAAT---44B.10.000037
ORF1ab/nsp3179N179KaaTaaA44B.1.177.450.001525
ORF1ab/nsp3179N179NaaTaaC44B.1.5820.001963
ORF1ab/nsp3179N179TaAtaCt44B.1.617.20.000015
ORF1ab/nsp3179N179NaaTaaC44C.170.222222
ORF1ab/nsp3179N179NaaTaaC44P.10.000063
ORF1ab/nsp3179N179delAAT---44P.10.000063
ORF1ab/nsp3179N179NaaTaaC44Q.80.00066
ORF1ab/nsp3179N179NaaTaaC33A.2.5.10.014423
ORF1ab/nsp3179N179del1Aat-at33All0.000001
ORF1ab/nsp3179N179NaaTaaC33AY.260.000085
ORF1ab/nsp3179N179NaaTaaC33AY.290.000047
ORF1ab/nsp3179N179YAatTat33AY.30.00003
ORF1ab/nsp3179N179NaaTaaC33AY.390.000074
ORF1ab/nsp3179N179YAatTat33AY.40.000005
ORF1ab/nsp3179N179NaaTaaC33AY.4.20.000065
ORF1ab/nsp3179N179TaAtaCt33AY.440.000018
ORF1ab/nsp3179N179YAatTat33AY.460.000312
ORF1ab/nsp3179N179NaaTaaC33AY.50.000062
ORF1ab/nsp3179N179NaaTaaC33AY.690.00056
ORF1ab/nsp3179N179TaAtaCt33AY.7.20.001678
ORF1ab/nsp3179N179SaAtaGt33AY.740.000347
ORF1ab/nsp3179N179NaaTaaC33AY.750.000168
ORF1ab/nsp3179N179NaaTaaC33AY.9.20.00011
ORF1ab/nsp3179N179YAatTat33B.10.000027
ORF1ab/nsp3179N179delAAT---33B.1.1.330.001263
ORF1ab/nsp3179N179NaaTaaC33B.1.1600.000094
ORF1ab/nsp3179N179YAatTat33B.1.5260.000071
ORF1ab/nsp3179N179NaaTaaC33C.360.002732
ORF1ab/nsp3179N179KaaTaaG33C.370.000348
ORF1ab/nsp3179N179IaAtaTt22AY.1030.000012
ORF1ab/nsp3179N179YAatTat22AY.1030.000012
ORF1ab/nsp3179N179delAAT---22AY.1030.000012
ORF1ab/nsp3179N179NaaTaaC22AY.1050.001286
ORF1ab/nsp3179N179NaaTaaC22AY.116.10.000623
ORF1ab/nsp3179N179NaaTaaC22AY.1190.000071
ORF1ab/nsp3179N179delAAT---22AY.120.000632
ORF1ab/nsp3179N179YAatTat22AY.1200.000074
ORF1ab/nsp3179N179NaaTaaC22AY.1210.000271
ORF1ab/nsp3179N179NaaTaaC22AY.230.000139
ORF1ab/nsp3179N179DAatGat22AY.250.000012
ORF1ab/nsp3179N179NaaTaaC22AY.250.000012
ORF1ab/nsp3179N179YAatTat22AY.290.000032
ORF1ab/nsp3179N179SaAtaGt22AY.390.000049
ORF1ab/nsp3179N179KaaTaaG22AY.40.000003
ORF1ab/nsp3179N179delAAT---22AY.40.000003
ORF1ab/nsp3179N179HAatCat22AY.40.000003
ORF1ab/nsp3179N179NaaTaaC22AY.4.2.10.000298
ORF1ab/nsp3179N179SaAtaGt22AY.440.000012
ORF1ab/nsp3179N179DAatGat22AY.440.000012
ORF1ab/nsp3179N179KaaTaaG22AY.460.000208
ORF1ab/nsp3179N179NaaTaaC22AY.470.000062
ORF1ab/nsp3179N179delAAT---22AY.50.000041
ORF1ab/nsp3179N179YAatTat22AY.610.00021
ORF1ab/nsp3179N179delAAT---22AY.710.00095
ORF1ab/nsp3179N179DAatGat22AY.750.000112
ORF1ab/nsp3179N179SaAtaGt22AY.90.000135
ORF1ab/nsp3179N179YAatTat22AY.980.000158
ORF1ab/nsp3179N179KaaTaaG12B.10.000009
ORF1ab/nsp3179N179KaaTaaA12B.10.000009
ORF1ab/nsp3179N179TaAtaCt22B.1.10.000036
ORF1ab/nsp3179N179YAatTat22B.1.1.2580.006515
ORF1ab/nsp3179N179NaaTaaC22B.1.1.2910.001485
ORF1ab/nsp3179N179NaaTaaC22B.1.1.3370.007194
ORF1ab/nsp3179N179delAAT---22B.1.1.3480.001592
ORF1ab/nsp3179N179NaaTaaC22B.1.1.4640.002946
ORF1ab/nsp3179N179NaaTaaC22B.1.177.100.001756
ORF1ab/nsp3179N179NaaTaaC22B.1.177.570.000562
ORF1ab/nsp3179N179NaaTaaC22B.1.177.730.001133
ORF1ab/nsp3179N179KaaTaaG22B.1.20.000018
ORF1ab/nsp3179N179NaaTaaC22B.1.2340.000264
ORF1ab/nsp3179N179KaaTaaA22B.1.2580.000133
ORF1ab/nsp3179N179delAAT---22B.1.351.20.000605
ORF1ab/nsp3179N179del1Aat-at22B.1.6270.00404
ORF1ab/nsp3179N179NaaTaaC22B.1.6280.000705
ORF1ab/nsp3179N179NaaTaaC22B.1.6370.000146
ORF1ab/nsp3179N179IaATaTC12B.290.003509
ORF1ab/nsp3179N179IaAtaTt12B.290.003509
ORF1ab/nsp3179N179delAAT---22N.60.014184
ORF1ab/nsp3179N179SaAtaGt22P.10.000032
ORF1ab/nsp3179N179NaaTaaC22Q.30.00029
ORF1ab/nsp3179N179delAAT---11A0.000387
ORF1ab/nsp3179N179NaaTaaC11A.2.50.000499
ORF1ab/nsp3179N179NaaTaaC11AP.10.001502
ORF1ab/nsp3179N179NaaTaaC11AY.1000.000046
ORF1ab/nsp3179N179DAatGat11AY.1020.000027
ORF1ab/nsp3179N179YAatTat11AY.1020.000027
ORF1ab/nsp3179N179SaAtaGt11AY.1020.000027
ORF1ab/nsp3179N179NaaTaaC11AY.1040.001984
ORF1ab/nsp3179N179NaaTaaC11AY.1060.000335
ORF1ab/nsp3179N179KaaTaaG11AY.1060.000335
ORF1ab/nsp3179N179delAAT---11AY.1080.001103
ORF1ab/nsp3179N179NaaTaaC11AY.1110.000183
ORF1ab/nsp3179N179NaaTaaC11AY.1130.000142
ORF1ab/nsp3179N179delAAT---11AY.1130.000142
ORF1ab/nsp3179N179SaAtaGt11AY.1150.005208
ORF1ab/nsp3179N179SaAtaGt11AY.1160.000287
ORF1ab/nsp3179N179NaaTaaC11AY.1170.000085
ORF1ab/nsp3179N179NaaTaaC11AY.1180.000063
ORF1ab/nsp3179N179YAatTat11AY.1190.000035
ORF1ab/nsp3179N179NaaTaaC11AY.1200.000037
ORF1ab/nsp3179N179delAAT---11AY.1200.000037
ORF1ab/nsp3179N179NaaTaaC11AY.120.10.000321
ORF1ab/nsp3179N179TaAtaCt11AY.1210.000135
ORF1ab/nsp3179N179NaaTaaC11AY.140.000088
ORF1ab/nsp3179N179SaAtaGt11AY.140.000088
ORF1ab/nsp3179N179TaAtaCt11AY.16.10.00047
ORF1ab/nsp3179N179delAAT---11AY.200.000039
ORF1ab/nsp3179N179DAatGat11AY.200.000039
ORF1ab/nsp3179N179HAatCat11AY.230.00007
ORF1ab/nsp3179N179TaAtaCt11AY.250.000006
ORF1ab/nsp3179N179NaaTaaC11AY.280.00189
ORF1ab/nsp3179N179SaAtaGt11AY.290.000016
ORF1ab/nsp3179N179DAatGat11AY.290.000016
ORF1ab/nsp3179N179NaaTaaC11AY.29.10.000221
ORF1ab/nsp3179N179NaaTaaC11AY.3.10.000085
ORF1ab/nsp3179N179NaaTaaC11AY.330.000067
ORF1ab/nsp3179N179YAatTat11AY.34.10.00051
ORF1ab/nsp3179N179NaaTaaC11AY.360.000148
ORF1ab/nsp3179N179YAatTat11AY.360.000148
ORF1ab/nsp3179N179NaaTaaC11AY.380.000499
ORF1ab/nsp3179N179HAatCat11AY.390.000025
ORF1ab/nsp3179N179TaAtaCt11AY.390.000025
ORF1ab/nsp3179N179YAatTat11AY.390.000025
ORF1ab/nsp3179N179NaaTaaC11AY.39.10.00004
ORF1ab/nsp3179N179delAAT---11AY.4.20.000022
ORF1ab/nsp3179N179DAatGat11AY.4.20.000022
ORF1ab/nsp3179N179NaaTaaC11AY.400.000964
ORF1ab/nsp3179N179IaAtaTt11AY.420.00004
ORF1ab/nsp3179N179delAAT---11AY.420.00004
ORF1ab/nsp3179N179NaaTaaC11AY.420.00004
ORF1ab/nsp3179N179YAatTat11AY.430.000004
ORF1ab/nsp3179N179DAatGat11AY.430.000004
ORF1ab/nsp3179N179YAatTat11AY.450.000122
ORF1ab/nsp3179N179DAatGat11AY.460.000104
ORF1ab/nsp3179N179SaAtaGt11AY.460.000104
ORF1ab/nsp3179N179NaaTaaC11AY.46.40.000165
ORF1ab/nsp3179N179HAatCat11AY.46.60.000072
ORF1ab/nsp3179N179DAatGat11AY.50.000021
ORF1ab/nsp3179N179NaaTaaC11AY.5.40.000277
ORF1ab/nsp3179N179YAatTat11AY.560.001605
ORF1ab/nsp3179N179YAatTat11AY.580.000907
ORF1ab/nsp3179N179NaaTaaC11AY.610.000105
ORF1ab/nsp3179N179delAAT---11AY.610.000105
ORF1ab/nsp3179N179TaAtaCt11AY.700.000209
ORF1ab/nsp3179N179YAatTat11AY.730.000665
ORF1ab/nsp3179N179NaaTaaC11AY.740.000116
ORF1ab/nsp3179N179delAAT---11AY.75.10.00018
ORF1ab/nsp3179N179delAAT---11AY.90.000068
ORF1ab/nsp3179N179NaaTaaC11AY.90.000068
ORF1ab/nsp3179N179YAatTat11AY.9.10.000084
ORF1ab/nsp3179N179SaAtaGt11AY.9.10.000084
ORF1ab/nsp3179N179NaaTaaC11AY.980.000079
ORF1ab/nsp3179N179NaaTaaC11AY.990.001049
ORF1ab/nsp3179N179NaaTaaC11B0.000128
ORF1ab/nsp3179N179YAatTat11B0.000128
ORF1ab/nsp3179N179SaAtaGt11B.10.000009
ORF1ab/nsp3179N179delAAT---11B.1.10.000018
ORF1ab/nsp3179N179del1Aat-at11B.1.10.000018
ORF1ab/nsp3179N179IaAtaTt11B.1.10.000018
ORF1ab/nsp3179N179SaAtaGt11B.1.1.1760.000439
ORF1ab/nsp3179N179HAatCat11B.1.1.2180.007692
ORF1ab/nsp3179N179DAatGat11B.1.1.2200.001859
ORF1ab/nsp3179N179NaaTaaC11B.1.1.2200.001859
ORF1ab/nsp3179N179NaaTaaC11B.1.1.250.000569
ORF1ab/nsp3179N179NaaTaaC11B.1.1.2530.002506
ORF1ab/nsp3179N179NaaTaaC11B.1.1.3000.010753
ORF1ab/nsp3179N179SaAtaGt11B.1.1.3060.000438
ORF1ab/nsp3179N179TaAtaCt11B.1.1.3170.000412
ORF1ab/nsp3179N179YAatTat11B.1.1.330.000421
ORF1ab/nsp3179N179NaaTaaC11B.1.1.330.000421
ORF1ab/nsp3179N179NaaTaaC11B.1.1.3690.000446
ORF1ab/nsp3179N179NaaTaaC11B.1.1.370.000193
ORF1ab/nsp3179N179YAatTat11B.1.1.3970.002252
ORF1ab/nsp3179N179NaaTaaC11B.1.1.4090.002833
ORF1ab/nsp3179N179delAAT---11B.1.1.500.000679
ORF1ab/nsp3179N179NaaTaaC11B.1.1.500.000679
ORF1ab/nsp3179N179SaAtaGt11B.1.1.5190.00004
ORF1ab/nsp3179N179IaAtaTt11B.1.1.70.000001
ORF1ab/nsp3179N179delAAT---11B.1.110.30.000718
ORF1ab/nsp3179N179KaaTaaA11B.1.1270.002198
ORF1ab/nsp3179N179NaaTaaC11B.1.1570.002985
ORF1ab/nsp3179N179SaAtaGt11B.1.177.210.000076
ORF1ab/nsp3179N179NaaTaaC11B.1.177.330.001645
ORF1ab/nsp3179N179delAAT---11B.1.177.80.000752
ORF1ab/nsp3179N179delAAT---11B.1.177.830.001481
ORF1ab/nsp3179N179delAAT---11B.1.177.860.000183
ORF1ab/nsp3179N179YAatTat11B.1.20.000009
ORF1ab/nsp3179N179IaAtaTt11B.1.20.000009
ORF1ab/nsp3179N179delAAT---11B.1.2100.002132
ORF1ab/nsp3179N179KaaTaaG11B.1.2210.000071
ORF1ab/nsp3179N179SaAtaGt11B.1.2210.000071
ORF1ab/nsp3179N179KaaTaaG11B.1.2220.001692
ORF1ab/nsp3179N179SaAtaGt11B.1.2250.015385
ORF1ab/nsp3179N179NaaTaaC11B.1.2320.000537
ORF1ab/nsp3179N179YAatTat11B.1.2430.00007
ORF1ab/nsp3179N179TaAtaCt11B.1.3110.000275
ORF1ab/nsp3179N179NaaTaaC11B.1.3190.003049
ORF1ab/nsp3179N179SaAtaGt11B.1.3510.00003
ORF1ab/nsp3179N179DAatGat11B.1.3510.00003
ORF1ab/nsp3179N179DAatGat11B.1.360.000146
ORF1ab/nsp3179N179TaAtaCt11B.1.36.290.000517
ORF1ab/nsp3179N179NaaTaaC11B.1.3750.00082
ORF1ab/nsp3179N179NaaTaaC11B.1.3890.001002
ORF1ab/nsp3179N179DAatGat11B.1.3960.000706
ORF1ab/nsp3179N179NaaTaaC11B.1.3980.002976
ORF1ab/nsp3179N179NaaTaaC11B.1.4260.001009
ORF1ab/nsp3179N179TaAtaCt11B.1.4290.000024
ORF1ab/nsp3179N179delAAT---11B.1.4290.000024
ORF1ab/nsp3179N179KaaTaaA11B.1.4290.000024
ORF1ab/nsp3179N179NaaTaaC11B.1.5500.013699
ORF1ab/nsp3179N179YAatTat11B.1.5750.000303
ORF1ab/nsp3179N179NaaTaaC11B.1.5770.000687
ORF1ab/nsp3179N179NaaTaaC11B.1.5800.004065
ORF1ab/nsp3179N179NaaTaaC11B.1.5960.000087
ORF1ab/nsp3179N179HAatCat11B.1.617.10.000129
ORF1ab/nsp3179N179HAatCat11B.1.617.20.000004
ORF1ab/nsp3179N179delAAT---11B.1.6210.000089
ORF1ab/nsp3179N179NaaTaaC11B.290.003509
ORF1ab/nsp3179N179NaaTaaC11B.6.60.000889
ORF1ab/nsp3179N179NaaTaaC11C.10.002392
ORF1ab/nsp3179N179delAAT---11C.170.055556
ORF1ab/nsp3179N179KaaTaaG11C.290.0625
ORF1ab/nsp3179N179YAatTat11C.36.3.10.002717
ORF1ab/nsp3179N179NaaTaaC11P.1.130.000898
ORF1ab/nsp3179N179TaAtaCt11Q.40.000455
ORF1ab/nsp3179N179delAAT---11Q.40.000455
ORF1ab/nsp3179N179KaaTaaG11Q.80.000165
ORF1ab/nsp3179N179delAAT---11R.10.00009