CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 179 | N179N | N997N | syn | aaT | aaC | 8129 | 8129 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179S | N997S | nonsyn | aAt | aGt | 352 | 352 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179Y | N997Y | nonsyn | Aat | Tat | 285 | 285 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179K | N997K | nonsyn | aaT | aaG | 150 | 128 | 0.853333 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179K | N997K | nonsyn | aaT | aaA | 150 | 22 | 0.146667 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179D | N997D | nonsyn | Aat | Gat | 89 | 89 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179del | N997del | del | AAT | --- | 72 | 72 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179T | N997T | nonsyn | aAt | aCt | 61 | 61 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179H | N997H | nonsyn | Aat | Cat | 22 | 22 | 1 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179I | N997I | nonsyn | aAt | aTt | 8 | 7 | 0.875 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179I | N997I | nonsyn | aAT | aTC | 8 | 1 | 0.125 | 3254-3256 |
ORF1ab/nsp3 | 179 | N179del1 | N997del1 | del | Aat | -at | 3 | 3 | 1 | 3254-3256 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 8129 | 8129 | All | 0.001555 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 4559 | 4559 | AD.2 | 0.998248 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2613 | 2613 | B.1.1.7 | 0.002339 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 352 | 352 | All | 0.000067 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 285 | 285 | All | 0.000055 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 240 | 240 | AD.1 | 0.987654 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 177 | 177 | AY.3 | 0.001761 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 128 | 150 | All | 0.000024 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 22 | 150 | All | 0.000004 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 112 | 112 | AY.4 | 0.000174 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 104 | 104 | B.1.1.315 | 0.881356 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 92 | 92 | AY.23 | 0.006417 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 89 | 89 | All | 0.000017 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 85 | 85 | B.1.617.2 | 0.00032 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 72 | 72 | All | 0.000014 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 61 | 61 | All | 0.000012 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 58 | 58 | B.1 | 0.000531 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 55 | 55 | B.1.1 | 0.000998 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 44 | 44 | B.1.2 | 0.000387 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 44 | 44 | B.1.525 | 0.004979 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 35 | 35 | P.1.10 | 0.009431 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 25 | 26 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 1 | 26 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 22 | 22 | AD.2.1 | 1 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 10 | 10 | B.1.1.305 | 0.03861 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 10 | 10 | B.1.351.5 | 0.005995 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 179 | N179I | aAT | aTC | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 5 | 5 | AY.89 | 0.02451 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 3 | 4 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 4 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 4 | 4 | B.1.177.45 | 0.001525 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 4 | 4 | C.17 | 0.222222 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | A.2.5.1 | 0.014423 |
ORF1ab/nsp3 | 179 | N179del1 | Aat | -at | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 2 | 2 | B.1.1.258 | 0.006515 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 179 | N179del1 | Aat | -at | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 179 | N179I | aAT | aTC | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 179 | N179del1 | Aat | -at | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 179 | N179I | aAt | aTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 179 | N179S | aAt | aGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 179 | N179D | Aat | Gat | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 179 | N179H | Aat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 1 | C.29 | 0.0625 |
ORF1ab/nsp3 | 179 | N179Y | Aat | Tat | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 179 | N179N | aaT | aaC | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 179 | N179T | aAt | aCt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 179 | N179K | aaT | aaG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 179 | N179del | AAT | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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