CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1789

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31789E1789KE2607KnonsynGaaAaa7119711918084-8086
ORF1ab/nsp31789E1789AE2607AnonsyngAagCa37337318084-8086
ORF1ab/nsp31789E1789EE2607EsyngaAgaG18818818084-8086
ORF1ab/nsp31789E1789delE2607deldelGAA---818118084-8086
ORF1ab/nsp31789E1789GE2607GnonsyngAagGa787818084-8086
ORF1ab/nsp31789E1789DE2607DnonsyngaAgaC62510.8225818084-8086
ORF1ab/nsp31789E1789DE2607DnonsyngaAgaT62110.1774198084-8086
ORF1ab/nsp31789E1789del1E2607del1delgAag-a21200.9523818084-8086
ORF1ab/nsp31789E1789del1E2607del1delGaa-aa2110.0476198084-8086
ORF1ab/nsp31789E1789XE2607XnonsynGaaTaa121218084-8086
ORF1ab/nsp31789E1789VE2607VnonsyngAagTa9918084-8086
ORF1ab/nsp31789E1789del2E2607del2delgAAg--7718084-8086
ORF1ab/nsp31789E1789QE2607QnonsynGaaCaa2218084-8086
ORF1ab/nsp31789E1789HE2607HnonsynGaACaT2218084-8086

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31789E1789KGaaAaa71197119All0.001362
ORF1ab/nsp31789E1789KGaaAaa41334133B.1.1.70.0037
ORF1ab/nsp31789E1789KGaaAaa15511551B.1.619.10.994869
ORF1ab/nsp31789E1789KGaaAaa11221122B.1.6190.977352
ORF1ab/nsp31789E1789AgAagCa373373All0.000071
ORF1ab/nsp31789E1789AgAagCa334334B.1.1.70.000299
ORF1ab/nsp31789E1789EgaAgaG188188All0.000036
ORF1ab/nsp31789E1789delGAA---8181All0.000015
ORF1ab/nsp31789E1789GgAagGa7878All0.000015
ORF1ab/nsp31789E1789DgaAgaC5162All0.00001
ORF1ab/nsp31789E1789DgaAgaT1162All0.000002
ORF1ab/nsp31789E1789EgaAgaG5252AY.1190.001836
ORF1ab/nsp31789E1789KGaaAaa4747B.1.617.20.000177
ORF1ab/nsp31789E1789delGAA---3737B.1.1.70.000033
ORF1ab/nsp31789E1789KGaaAaa3636B.10.00033
ORF1ab/nsp31789E1789EgaAgaG3232B.1.617.20.00012
ORF1ab/nsp31789E1789KGaaAaa3030AY.40.000047
ORF1ab/nsp31789E1789EgaAgaG3030B.1.1.3010.035377
ORF1ab/nsp31789E1789EgaAgaG2424AY.250.000144
ORF1ab/nsp31789E1789AgAagCa2323Q.10.002906
ORF1ab/nsp31789E1789del1gAag-a2021All0.000004
ORF1ab/nsp31789E1789del1Gaa-aa121All0
ORF1ab/nsp31789E1789DgaAgaC1717B.1.351.20.005144
ORF1ab/nsp31789E1789GgAagGa1515B.1.1.70.000013
ORF1ab/nsp31789E1789KGaaAaa1515B.1.4270.000757
ORF1ab/nsp31789E1789KGaaAaa1414B.1.10.000254
ORF1ab/nsp31789E1789KGaaAaa1313B.1.20.000114
ORF1ab/nsp31789E1789XGaaTaa1212All0.000002
ORF1ab/nsp31789E1789DgaAgaC1212B.1.617.20.000045
ORF1ab/nsp31789E1789KGaaAaa1111Q.10.00139
ORF1ab/nsp31789E1789VgAagTa99All0.000002
ORF1ab/nsp31789E1789EgaAgaG99AY.430.00004
ORF1ab/nsp31789E1789KGaaAaa99B.1.1.2940.011392
ORF1ab/nsp31789E1789KGaaAaa88AY.440.000049
ORF1ab/nsp31789E1789EgaAgaG88B.1.1.70.000007
ORF1ab/nsp31789E1789KGaaAaa88D.20.0006
ORF1ab/nsp31789E1789del2gAAg--77All0.000001
ORF1ab/nsp31789E1789GgAagGa77AY.40.000011
ORF1ab/nsp31789E1789GgAagGa77B.1.1770.000092
ORF1ab/nsp31789E1789delGAA---66AY.40.000009
ORF1ab/nsp31789E1789EgaAgaG66AY.450.00073
ORF1ab/nsp31789E1789KGaaAaa66AY.980.000474
ORF1ab/nsp31789E1789KGaaAaa55B0.000639
ORF1ab/nsp31789E1789DgaAgaC55B.1.10.000091
ORF1ab/nsp31789E1789KGaaAaa55B.1.1.3710.052083
ORF1ab/nsp31789E1789KGaaAaa55B.1.1770.000066
ORF1ab/nsp31789E1789GgAagGa55B.1.20.000044
ORF1ab/nsp31789E1789KGaaAaa44AY.1020.000106
ORF1ab/nsp31789E1789KGaaAaa44AY.250.000024
ORF1ab/nsp31789E1789DgaAgaT34AY.40.000005
ORF1ab/nsp31789E1789DgaAgaC14AY.40.000002
ORF1ab/nsp31789E1789DgaAgaC34AY.430.000013
ORF1ab/nsp31789E1789DgaAgaT14AY.430.000004
ORF1ab/nsp31789E1789GgAagGa44B.10.000037
ORF1ab/nsp31789E1789delGAA---44B.10.000037
ORF1ab/nsp31789E1789delGAA---44B.1.10.000073
ORF1ab/nsp31789E1789DgaAgaC44B.1.1.4860.006309
ORF1ab/nsp31789E1789GgAagGa44B.1.3980.011905
ORF1ab/nsp31789E1789KGaaAaa44B.1.4290.000094
ORF1ab/nsp31789E1789GgAagGa44B.1.4290.000094
ORF1ab/nsp31789E1789EgaAgaG44B.1.5260.000094
ORF1ab/nsp31789E1789AgAagCa44B.1.617.20.000015
ORF1ab/nsp31789E1789DgaAgaC33AY.1020.00008
ORF1ab/nsp31789E1789del1gAag-a33AY.440.000018
ORF1ab/nsp31789E1789EgaAgaG33AY.440.000018
ORF1ab/nsp31789E1789KGaaAaa33AY.99.20.000276
ORF1ab/nsp31789E1789GgAagGa33B.1.10.000054
ORF1ab/nsp31789E1789del1gAag-a33B.1.1.70.000003
ORF1ab/nsp31789E1789GgAagGa33B.1.1.750.031915
ORF1ab/nsp31789E1789KGaaAaa33B.1.1600.000094
ORF1ab/nsp31789E1789KGaaAaa33B.1.2430.000209
ORF1ab/nsp31789E1789GgAagGa33B.1.3620.004622
ORF1ab/nsp31789E1789KGaaAaa33B.1.438.10.000322
ORF1ab/nsp31789E1789EgaAgaG33B.1.564.10.004732
ORF1ab/nsp31789E1789del1gAag-a220.111111
ORF1ab/nsp31789E1789QGaaCaa22All0
ORF1ab/nsp31789E1789HGaACaT22All0
ORF1ab/nsp31789E1789EgaAgaG22AY.1030.000012
ORF1ab/nsp31789E1789DgaAgaC22AY.4.20.000043
ORF1ab/nsp31789E1789delGAA---22AY.4.50.000215
ORF1ab/nsp31789E1789delGAA---22AY.430.000009
ORF1ab/nsp31789E1789AgAagCa22AY.430.000009
ORF1ab/nsp31789E1789KGaaAaa22AY.430.000009
ORF1ab/nsp31789E1789XGaaTaa22AY.430.000009
ORF1ab/nsp31789E1789AgAagCa22AY.440.000012
ORF1ab/nsp31789E1789KGaaAaa22AY.50.000041
ORF1ab/nsp31789E1789KGaaAaa22AY.60.000082
ORF1ab/nsp31789E1789AgAagCa22B.1.1.1890.003026
ORF1ab/nsp31789E1789KGaaAaa22B.1.1.2770.001517
ORF1ab/nsp31789E1789KGaaAaa22B.1.1460.008475
ORF1ab/nsp31789E1789delGAA---22B.1.1770.000026
ORF1ab/nsp31789E1789delGAA---22B.1.177.160.001329
ORF1ab/nsp31789E1789EgaAgaG22B.1.20.000018
ORF1ab/nsp31789E1789KGaaAaa22B.1.2320.001075
ORF1ab/nsp31789E1789KGaaAaa22B.1.3110.000549
ORF1ab/nsp31789E1789KGaaAaa22B.1.3210.068966
ORF1ab/nsp31789E1789DgaAgaT22B.1.36.190.018519
ORF1ab/nsp31789E1789KGaaAaa22B.1.5260.000047
ORF1ab/nsp31789E1789KGaaAaa22B.1.5820.000981
ORF1ab/nsp31789E1789KGaaAaa22B.1.5970.009259
ORF1ab/nsp31789E1789delGAA---22B.1.617.20.000008
ORF1ab/nsp31789E1789VgAagTa22B.1.617.20.000008
ORF1ab/nsp31789E1789KGaaAaa22P.1.140.000096
ORF1ab/nsp31789E1789GgAagGa22Q.30.00029
ORF1ab/nsp31789E1789GgAagGa110.055556
ORF1ab/nsp31789E1789del1gAag-a11A0.000387
ORF1ab/nsp31789E1789XGaaTaa11A0.000387
ORF1ab/nsp31789E1789KGaaAaa11A.20.000662
ORF1ab/nsp31789E1789AgAagCa11A.23.10.000704
ORF1ab/nsp31789E1789KGaaAaa11A.50.001923
ORF1ab/nsp31789E1789KGaaAaa11AY.1030.000006
ORF1ab/nsp31789E1789GgAagGa11AY.1030.000006
ORF1ab/nsp31789E1789delGAA---11AY.1110.000183
ORF1ab/nsp31789E1789GgAagGa11AY.1170.000085
ORF1ab/nsp31789E1789KGaaAaa11AY.1180.000063
ORF1ab/nsp31789E1789del1gAag-a11AY.1190.000035
ORF1ab/nsp31789E1789GgAagGa11AY.1200.000037
ORF1ab/nsp31789E1789del1gAag-a11AY.1210.000135
ORF1ab/nsp31789E1789KGaaAaa11AY.190.00114
ORF1ab/nsp31789E1789delGAA---11AY.190.00114
ORF1ab/nsp31789E1789EgaAgaG11AY.200.000039
ORF1ab/nsp31789E1789KGaaAaa11AY.200.000039
ORF1ab/nsp31789E1789KGaaAaa11AY.230.00007
ORF1ab/nsp31789E1789KGaaAaa11AY.23.10.000417
ORF1ab/nsp31789E1789AgAagCa11AY.250.000006
ORF1ab/nsp31789E1789GgAagGa11AY.250.000006
ORF1ab/nsp31789E1789del1gAag-a11AY.260.000028
ORF1ab/nsp31789E1789AgAagCa11AY.30.00001
ORF1ab/nsp31789E1789AgAagCa11AY.3.10.000085
ORF1ab/nsp31789E1789QGaaCaa11AY.300.000396
ORF1ab/nsp31789E1789del2gAAg--11AY.320.000532
ORF1ab/nsp31789E1789delGAA---11AY.330.000067
ORF1ab/nsp31789E1789KGaaAaa11AY.390.000025
ORF1ab/nsp31789E1789EgaAgaG11AY.390.000025
ORF1ab/nsp31789E1789KGaaAaa11AY.39.10.00004
ORF1ab/nsp31789E1789VgAagTa11AY.39.10.00004
ORF1ab/nsp31789E1789EgaAgaG11AY.40.000002
ORF1ab/nsp31789E1789del1gAag-a11AY.40.000002
ORF1ab/nsp31789E1789AgAagCa11AY.40.000002
ORF1ab/nsp31789E1789KGaaAaa11AY.4.20.000022
ORF1ab/nsp31789E1789KGaaAaa11AY.4.2.10.000149
ORF1ab/nsp31789E1789VgAagTa11AY.4.2.10.000149
ORF1ab/nsp31789E1789del2gAAg--11AY.4.50.000107
ORF1ab/nsp31789E1789KGaaAaa11AY.420.00004
ORF1ab/nsp31789E1789VgAagTa11AY.430.000004
ORF1ab/nsp31789E1789del2gAAg--11AY.430.000004
ORF1ab/nsp31789E1789GgAagGa11AY.430.000004
ORF1ab/nsp31789E1789GgAagGa11AY.440.000006
ORF1ab/nsp31789E1789XGaaTaa11AY.440.000006
ORF1ab/nsp31789E1789KGaaAaa11AY.460.000104
ORF1ab/nsp31789E1789EgaAgaG11AY.460.000104
ORF1ab/nsp31789E1789delGAA---11AY.46.20.000635
ORF1ab/nsp31789E1789KGaaAaa11AY.46.40.000165
ORF1ab/nsp31789E1789DgaAgaC11AY.46.60.000072
ORF1ab/nsp31789E1789GgAagGa11AY.470.000031
ORF1ab/nsp31789E1789GgAagGa11AY.50.000021
ORF1ab/nsp31789E1789DgaAgaT11AY.60.000041
ORF1ab/nsp31789E1789GgAagGa11AY.60.000041
ORF1ab/nsp31789E1789KGaaAaa11AY.620.000436
ORF1ab/nsp31789E1789del1gAag-a11AY.670.000464
ORF1ab/nsp31789E1789KGaaAaa11AY.690.000187
ORF1ab/nsp31789E1789XGaaTaa11AY.710.000475
ORF1ab/nsp31789E1789KGaaAaa11AY.710.000475
ORF1ab/nsp31789E1789delGAA---11AY.720.001361
ORF1ab/nsp31789E1789KGaaAaa11AY.720.001361
ORF1ab/nsp31789E1789KGaaAaa11AY.750.000056
ORF1ab/nsp31789E1789del1Gaa-aa11AY.750.000056
ORF1ab/nsp31789E1789EgaAgaG11AY.75.10.00018
ORF1ab/nsp31789E1789EgaAgaG11AY.850.000427
ORF1ab/nsp31789E1789XGaaTaa11AY.9.20.000037
ORF1ab/nsp31789E1789XGaaTaa11B0.000128
ORF1ab/nsp31789E1789EgaAgaG11B.10.000009
ORF1ab/nsp31789E1789XGaaTaa11B.10.000009
ORF1ab/nsp31789E1789DgaAgaC11B.10.000009
ORF1ab/nsp31789E1789XGaaTaa11B.1.10.000018
ORF1ab/nsp31789E1789HGaACaT11B.1.10.000018
ORF1ab/nsp31789E1789VgAagTa11B.1.10.000018
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.10.000327
ORF1ab/nsp31789E1789GgAagGa11B.1.1.10.000327
ORF1ab/nsp31789E1789del2gAAg--11B.1.1.1610.003534
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.1720.018182
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.2260.005814
ORF1ab/nsp31789E1789delGAA---11B.1.1.2360.006897
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.2580.003257
ORF1ab/nsp31789E1789AgAagCa11B.1.1.2630.001558
ORF1ab/nsp31789E1789GgAagGa11B.1.1.280.000311
ORF1ab/nsp31789E1789EgaAgaG11B.1.1.280.000311
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.2910.000742
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.3030.002762
ORF1ab/nsp31789E1789delGAA---11B.1.1.3060.000438
ORF1ab/nsp31789E1789delGAA---11B.1.1.3150.008475
ORF1ab/nsp31789E1789EgaAgaG11B.1.1.3170.000412
ORF1ab/nsp31789E1789QGaaCaa11B.1.1.3690.000446
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.370.000193
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.3720.000689
ORF1ab/nsp31789E1789EgaAgaG11B.1.1.4340.000349
ORF1ab/nsp31789E1789delGAA---11B.1.1.460.004367
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.5190.00004
ORF1ab/nsp31789E1789XGaaTaa11B.1.1.70.000001
ORF1ab/nsp31789E1789VgAagTa11B.1.1.70.000001
ORF1ab/nsp31789E1789HGaACaT11B.1.1.70.000001
ORF1ab/nsp31789E1789del2gAAg--11B.1.1.70.000001
ORF1ab/nsp31789E1789DgaAgaT11B.1.1.70.000001
ORF1ab/nsp31789E1789KGaaAaa11B.1.1.700.000341
ORF1ab/nsp31789E1789delGAA---11B.1.1.700.000341
ORF1ab/nsp31789E1789delGAA---11B.1.1400.018868
ORF1ab/nsp31789E1789GgAagGa11B.1.1470.000756
ORF1ab/nsp31789E1789EgaAgaG11B.1.1770.000013
ORF1ab/nsp31789E1789del2gAAg--11B.1.1770.000013
ORF1ab/nsp31789E1789DgaAgaC11B.1.177.170.000821
ORF1ab/nsp31789E1789delGAA---11B.1.177.180.00116
ORF1ab/nsp31789E1789XGaaTaa11B.1.177.210.000076
ORF1ab/nsp31789E1789delGAA---11B.1.177.570.000281
ORF1ab/nsp31789E1789delGAA---11B.1.177.60.000977
ORF1ab/nsp31789E1789delGAA---11B.1.177.620.001192
ORF1ab/nsp31789E1789KGaaAaa11B.1.177.70.000165
ORF1ab/nsp31789E1789KGaaAaa11B.1.177.730.000566
ORF1ab/nsp31789E1789GgAagGa11B.1.177.860.000183
ORF1ab/nsp31789E1789del1gAag-a11B.1.20.000009
ORF1ab/nsp31789E1789GgAagGa11B.1.2340.000132
ORF1ab/nsp31789E1789KGaaAaa11B.1.2340.000132
ORF1ab/nsp31789E1789KGaaAaa11B.1.2400.000216
ORF1ab/nsp31789E1789delGAA---11B.1.2420.018868
ORF1ab/nsp31789E1789DgaAgaC11B.1.2430.00007
ORF1ab/nsp31789E1789KGaaAaa11B.1.2580.000067
ORF1ab/nsp31789E1789DgaAgaT11B.1.2600.003344
ORF1ab/nsp31789E1789KGaaAaa11B.1.2650.001271
ORF1ab/nsp31789E1789KGaaAaa11B.1.3050.002151
ORF1ab/nsp31789E1789KGaaAaa11B.1.3380.008621
ORF1ab/nsp31789E1789delGAA---11B.1.36.180.00042
ORF1ab/nsp31789E1789KGaaAaa11B.1.36.390.002217
ORF1ab/nsp31789E1789GgAagGa11B.1.3660.004878
ORF1ab/nsp31789E1789KGaaAaa11B.1.3710.001122
ORF1ab/nsp31789E1789GgAagGa11B.1.416.10.001563
ORF1ab/nsp31789E1789del1gAag-a11B.1.4240.008065
ORF1ab/nsp31789E1789XGaaTaa11B.1.4290.000024
ORF1ab/nsp31789E1789KGaaAaa11B.1.5090.000866
ORF1ab/nsp31789E1789VgAagTa11B.1.5260.000024
ORF1ab/nsp31789E1789KGaaAaa11B.1.5670.003333
ORF1ab/nsp31789E1789del2gAAg--11B.1.5950.000261
ORF1ab/nsp31789E1789KGaaAaa11B.1.5960.000087
ORF1ab/nsp31789E1789KGaaAaa11B.1.6120.002653
ORF1ab/nsp31789E1789GgAagGa11B.1.617.20.000004
ORF1ab/nsp31789E1789KGaaAaa11B.1.6210.000089
ORF1ab/nsp31789E1789del1gAag-a11B.1.6210.000089
ORF1ab/nsp31789E1789GgAagGa11B.1.6210.000089
ORF1ab/nsp31789E1789GgAagGa11B.1.6370.000073
ORF1ab/nsp31789E1789delGAA---11B.1.6380.052632
ORF1ab/nsp31789E1789KGaaAaa11B.290.003509
ORF1ab/nsp31789E1789KGaaAaa11B.310.003731
ORF1ab/nsp31789E1789DgaAgaT11C.350.000774
ORF1ab/nsp31789E1789del1gAag-a11D.20.000075
ORF1ab/nsp31789E1789KGaaAaa11L.40.05
ORF1ab/nsp31789E1789EgaAgaG11N.30.005814
ORF1ab/nsp31789E1789KGaaAaa11P.10.000016
ORF1ab/nsp31789E1789del1gAag-a11P.10.000016
ORF1ab/nsp31789E1789VgAagTa11P.10.000016
ORF1ab/nsp31789E1789DgaAgaT11P.10.000016
ORF1ab/nsp31789E1789KGaaAaa11P.1.10.000318
ORF1ab/nsp31789E1789EgaAgaG11P.1.140.000048
ORF1ab/nsp31789E1789delGAA---11Q.10.000126
ORF1ab/nsp31789E1789KGaaAaa11Q.20.000613
ORF1ab/nsp31789E1789del1gAag-a11Q.30.000145
ORF1ab/nsp31789E1789KGaaAaa11Q.40.000455
ORF1ab/nsp31789E1789KGaaAaa11Q.50.016949
ORF1ab/nsp31789E1789GgAagGa11Q.80.000165
ORF1ab/nsp31789E1789delGAA---11U.30.003861