CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1788 | M1788I | M2606I | nonsyn | atG | atA | 53242 | 52693 | 0.989689 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788I | M2606I | nonsyn | atG | atT | 53242 | 525 | 0.00986064 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788I | M2606I | nonsyn | atG | atC | 53242 | 24 | 0.000450772 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788T | M2606T | nonsyn | aTg | aCg | 747 | 744 | 0.995984 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788T | M2606T | nonsyn | aTG | aCA | 747 | 3 | 0.00401606 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788V | M2606V | nonsyn | Atg | Gtg | 310 | 288 | 0.929032 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788V | M2606V | nonsyn | AtG | GtA | 310 | 21 | 0.0677419 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788V | M2606V | nonsyn | AtG | GtT | 310 | 1 | 0.00322581 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788del | M2606del | del | ATG | --- | 89 | 89 | 1 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788L | M2606L | nonsyn | Atg | Ctg | 83 | 79 | 0.951807 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788L | M2606L | nonsyn | Atg | Ttg | 83 | 3 | 0.0361446 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788L | M2606L | nonsyn | AtG | TtA | 83 | 1 | 0.0120482 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788R | M2606R | nonsyn | aTg | aGg | 20 | 20 | 1 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788del2 | M2606del2 | del | aTG | a-- | 11 | 6 | 0.545455 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788del2 | M2606del2 | del | ATg | --g | 11 | 5 | 0.454545 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788del1 | M2606del1 | del | Atg | -tg | 6 | 3 | 0.5 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788del1 | M2606del1 | del | aTg | a-g | 6 | 2 | 0.333333 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788del1 | M2606del1 | del | atG | at- | 6 | 1 | 0.166667 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788K | M2606K | nonsyn | aTg | aAg | 3 | 3 | 1 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788N | M2606N | nonsyn | aTG | aAT | 2 | 2 | 1 | 8081-8083 |
ORF1ab/nsp3 | 1788 | M1788S | M2606S | nonsyn | ATG | TCA | 1 | 1 | 1 | 8081-8083 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 52693 | 53242 | All | 0.010078 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 525 | 53242 | All | 0.0001 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 24 | 53242 | All | 0.000005 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 51176 | 51177 | B.1.2 | 0.450624 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 51177 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 744 | 747 | All | 0.000142 |
ORF1ab/nsp3 | 1788 | M1788T | aTG | aCA | 3 | 747 | All | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 645 | 645 | B.1.596 | 0.056204 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 434 | 446 | B.1 | 0.003975 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 12 | 446 | B.1 | 0.00011 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 288 | 310 | All | 0.000055 |
ORF1ab/nsp3 | 1788 | M1788V | AtG | GtA | 21 | 310 | All | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788V | AtG | GtT | 1 | 310 | All | 0 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 117 | 184 | B.1.1.7 | 0.000105 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 67 | 184 | B.1.1.7 | 0.00006 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 174 | 174 | P.1.14 | 0.008317 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 161 | 161 | B.1.617.2 | 0.000606 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 127 | 127 | AY.61 | 0.013307 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 89 | 89 | All | 0.000017 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 79 | 83 | All | 0.000015 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ttg | 3 | 83 | All | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788L | AtG | TtA | 1 | 83 | All | 0 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 75 | 75 | AA.7 | 0.688073 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 52 | 62 | AY.4 | 0.000081 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 9 | 62 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 62 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 37 | 52 | AY.25 | 0.000223 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 15 | 52 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 35 | 52 | B.1.617.2 | 0.000132 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 17 | 52 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 37 | 45 | B.1.1 | 0.000671 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 8 | 45 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 41 | 41 | B.1.1.7 | 0.000037 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 36 | 36 | B.1.36 | 0.005252 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 34 | 34 | B.1.438.1 | 0.003647 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 34 | 34 | B.1.526 | 0.000799 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 28 | 30 | AY.43 | 0.000124 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 30 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 24 | 30 | P.1 | 0.000378 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 6 | 30 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 15 | 28 | B.1.429 | 0.000353 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 12 | 28 | B.1.429 | 0.000282 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 28 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 27 | 27 | B.1.1.519 | 0.001072 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 25 | 25 | B.1.1.47 | 0.13369 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 24 | 24 | B.1.139 | 0.017595 |
ORF1ab/nsp3 | 1788 | M1788V | AtG | GtA | 21 | 23 | B.1.2 | 0.000185 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 2 | 23 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 10 | 21 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 10 | 21 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 21 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 20 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 18 | 18 | B.1.1.39 | 0.009174 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 12 | 16 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 4 | 16 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 16 | 16 | B.1.1.311 | 0.005731 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 16 | 16 | B.1.595 | 0.004175 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 15 | 15 | AY.75.1 | 0.002705 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 15 | 15 | B.1.177.73 | 0.008494 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 15 | 15 | B.1.408 | 0.055351 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 15 | 15 | B.1.438.1 | 0.001609 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 12 | 12 | B.1.234 | 0.001583 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 12 | 12 | C.16 | 0.012725 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 6 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788del2 | ATg | --g | 5 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 10 | 11 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1788 | M1788L | AtG | TtA | 1 | 11 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 7 | 10 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 3 | 10 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 8 | 9 | AY.29 | 0.000126 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 9 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 6 | 9 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 9 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 6 | 8 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 8 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 7 | 7 | B.1.503 | 0.017413 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 7 | 7 | B.1.580 | 0.028455 |
ORF1ab/nsp3 | 1788 | M1788del1 | Atg | -tg | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788del1 | aTg | a-g | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1788 | M1788del1 | atG | at- | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 4 | 6 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 6 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 4 | 6 | B | 0.000511 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 6 | B | 0.000256 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1788 | M1788T | aTG | aCA | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 6 | 6 | B.1.567 | 0.02 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 4 | 5 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 5 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 5 | 5 | B.1.1.335 | 0.064935 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ttg | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 4 | 5 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 5 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 5 | 5 | B.1.396 | 0.003529 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 4 | 4 | AY.50 | 0.003197 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 4 | 4 | AY.79 | 0.004843 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 4 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 4 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 4 | 4 | AY.99 | 0.004197 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 4 | 4 | B.1.36.22 | 0.004831 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 1788 | M1788K | aTg | aAg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 3 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 3 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 3 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 3 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 3 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 3 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 3 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 1788 | M1788N | aTG | aAT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1788 | M1788del2 | ATg | --g | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1788 | M1788del1 | Atg | -tg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1788 | M1788del2 | ATg | --g | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1788 | M1788T | aTG | aCA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 2 | 2 | B.1.521 | 0.00995 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1788 | M1788del1 | aTg | a-g | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 2 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 2 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1788 | M1788S | ATG | TCA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1788 | M1788S | ATG | TCA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ttg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1788 | M1788del2 | ATg | --g | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788K | aTg | aAg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1788 | M1788N | aTG | aAT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788del1 | atG | at- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1788 | M1788K | aTg | aAg | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ttg | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1788 | M1788K | aTg | aAg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1788 | M1788N | aTG | aAT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1788 | M1788R | aTg | aGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1788 | M1788V | AtG | GtT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1788 | M1788del2 | aTG | a-- | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1788 | M1788T | aTg | aCg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 1788 | M1788L | Atg | Ctg | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1788 | M1788del1 | Atg | -tg | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1788 | M1788V | Atg | Gtg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1788 | M1788I | atG | atA | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1788 | M1788del | ATG | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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