CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1787 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31787P1787SP2605SnonsynCcaTca3472347218078-8080

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31787P1787SCcaTca34723472All0.000664
ORF1ab/nsp31787P1787SCcaTca922922B.1.1.70.000825
ORF1ab/nsp31787P1787SCcaTca655655Q.10.082744
ORF1ab/nsp31787P1787SCcaTca189189AY.430.000837
ORF1ab/nsp31787P1787SCcaTca170170P.20.031728
ORF1ab/nsp31787P1787SCcaTca150150AY.40.000233
ORF1ab/nsp31787P1787SCcaTca105105B.1.3571
ORF1ab/nsp31787P1787SCcaTca9999P.1.60.192607
ORF1ab/nsp31787P1787SCcaTca6262AY.1030.000385
ORF1ab/nsp31787P1787SCcaTca6161B.400.022222
ORF1ab/nsp31787P1787SCcaTca5757B.10.000522
ORF1ab/nsp31787P1787SCcaTca4545B.1.177.80.03386
ORF1ab/nsp31787P1787SCcaTca4444B.1.617.20.000166
ORF1ab/nsp31787P1787SCcaTca3838B.1.20.000335
ORF1ab/nsp31787P1787SCcaTca3737B.1.177.40.007809
ORF1ab/nsp31787P1787SCcaTca3737B.1.177.810.007005
ORF1ab/nsp31787P1787SCcaTca3434B.1.1600.00106
ORF1ab/nsp31787P1787SCcaTca3333AY.250.000198
ORF1ab/nsp31787P1787SCcaTca3232B.1.1061
ORF1ab/nsp31787P1787SCcaTca3232B.370.914286
ORF1ab/nsp31787P1787SCcaTca3131B.1.177.670.236641
ORF1ab/nsp31787P1787SCcaTca3131B.1.177.760.077307
ORF1ab/nsp31787P1787SCcaTca3030AY.50.000619
ORF1ab/nsp31787P1787SCcaTca2727B.1.258.110.010702
ORF1ab/nsp31787P1787SCcaTca2626B.1.4990.027311
ORF1ab/nsp31787P1787SCcaTca2222B.1.1770.00029
ORF1ab/nsp31787P1787SCcaTca2222B.1.4290.000518
ORF1ab/nsp31787P1787SCcaTca1919AY.30.000189
ORF1ab/nsp31787P1787SCcaTca1818AY.440.00011
ORF1ab/nsp31787P1787SCcaTca1818B.1.10.000327
ORF1ab/nsp31787P1787SCcaTca1717B.1.360.00248
ORF1ab/nsp31787P1787SCcaTca1515AY.1190.00053
ORF1ab/nsp31787P1787SCcaTca1515B.1.5260.000353
ORF1ab/nsp31787P1787SCcaTca1414P.10.000221
ORF1ab/nsp31787P1787SCcaTca1111AY.1180.000689
ORF1ab/nsp31787P1787SCcaTca1111AY.60.000452
ORF1ab/nsp31787P1787SCcaTca1111B.1.5960.000959
ORF1ab/nsp31787P1787SCcaTca1111R.10.00099
ORF1ab/nsp31787P1787SCcaTca1010AY.390.000247
ORF1ab/nsp31787P1787SCcaTca1010B.1.1.5190.000397
ORF1ab/nsp31787P1787SCcaTca1010C.370.001161
ORF1ab/nsp31787P1787SCcaTca99AY.200.00035
ORF1ab/nsp31787P1787SCcaTca99B.1.1.470.048128
ORF1ab/nsp31787P1787SCcaTca88AY.1020.000212
ORF1ab/nsp31787P1787SCcaTca88B.1.2360.016427
ORF1ab/nsp31787P1787SCcaTca88B.1.3490.005718
ORF1ab/nsp31787P1787SCcaTca88B.1.4000.003432
ORF1ab/nsp31787P1787SCcaTca88B.1.5820.003925
ORF1ab/nsp31787P1787SCcaTca88Q.30.00116
ORF1ab/nsp31787P1787SCcaTca77AY.4.20.000152
ORF1ab/nsp31787P1787SCcaTca77AY.750.000392
ORF1ab/nsp31787P1787SCcaTca77B.1.2210.000497
ORF1ab/nsp31787P1787SCcaTca77P.1.140.000335
ORF1ab/nsp31787P1787SCcaTca66B.1.1.5230.009375
ORF1ab/nsp31787P1787SCcaTca66B.1.2430.000418
ORF1ab/nsp31787P1787SCcaTca66P.1.150.001394
ORF1ab/nsp31787P1787SCcaTca55AY.1000.00023
ORF1ab/nsp31787P1787SCcaTca55AY.1200.000186
ORF1ab/nsp31787P1787SCcaTca55B.1.3110.001373
ORF1ab/nsp31787P1787SCcaTca44AY.1130.00057
ORF1ab/nsp31787P1787SCcaTca44B.1.1.1890.006051
ORF1ab/nsp31787P1787SCcaTca44B.1.2580.000266
ORF1ab/nsp31787P1787SCcaTca44B.1.4050.049383
ORF1ab/nsp31787P1787SCcaTca44B.1.4270.000202
ORF1ab/nsp31787P1787SCcaTca33AY.230.000209
ORF1ab/nsp31787P1787SCcaTca33AY.360.000445
ORF1ab/nsp31787P1787SCcaTca33B.1.1.2140.000166
ORF1ab/nsp31787P1787SCcaTca33B.1.1.2840.000322
ORF1ab/nsp31787P1787SCcaTca33B.1.1.2910.002227
ORF1ab/nsp31787P1787SCcaTca33B.1.1.3160.002775
ORF1ab/nsp31787P1787SCcaTca33B.1.2340.000396
ORF1ab/nsp31787P1787SCcaTca33B.1.5250.000339
ORF1ab/nsp31787P1787SCcaTca33D.20.000225
ORF1ab/nsp31787P1787SCcaTca22AY.1060.00067
ORF1ab/nsp31787P1787SCcaTca22AY.290.000032
ORF1ab/nsp31787P1787SCcaTca22AY.3.10.000171
ORF1ab/nsp31787P1787SCcaTca22AY.460.000208
ORF1ab/nsp31787P1787SCcaTca22AY.950.001522
ORF1ab/nsp31787P1787SCcaTca22AY.990.002099
ORF1ab/nsp31787P1787SCcaTca22AZ.2.10.01626
ORF1ab/nsp31787P1787SCcaTca22B0.000256
ORF1ab/nsp31787P1787SCcaTca22B.1.1.10.000653
ORF1ab/nsp31787P1787SCcaTca22B.1.1.2220.000408
ORF1ab/nsp31787P1787SCcaTca22B.1.1.2310.006192
ORF1ab/nsp31787P1787SCcaTca22B.1.1.280.000622
ORF1ab/nsp31787P1787SCcaTca22B.1.1.3110.000716
ORF1ab/nsp31787P1787SCcaTca22B.1.1.3150.016949
ORF1ab/nsp31787P1787SCcaTca22B.1.1.3290.007692
ORF1ab/nsp31787P1787SCcaTca22B.1.1.3590.055556
ORF1ab/nsp31787P1787SCcaTca22B.1.177.100.001756
ORF1ab/nsp31787P1787SCcaTca22B.1.177.200.003035
ORF1ab/nsp31787P1787SCcaTca22B.1.177.750.002081
ORF1ab/nsp31787P1787SCcaTca22B.1.2400.000431
ORF1ab/nsp31787P1787SCcaTca22B.1.36.240.012346
ORF1ab/nsp31787P1787SCcaTca22B.1.36.390.004435
ORF1ab/nsp31787P1787SCcaTca22B.1.362.20.009434
ORF1ab/nsp31787P1787SCcaTca22B.1.3930.057143
ORF1ab/nsp31787P1787SCcaTca22B.1.6210.000177
ORF1ab/nsp31787P1787SCcaTca22B.1.6230.001073
ORF1ab/nsp31787P1787SCcaTca22D.50.00995
ORF1ab/nsp31787P1787SCcaTca22Q.80.00033
ORF1ab/nsp31787P1787SCcaTca11A.10.000282
ORF1ab/nsp31787P1787SCcaTca11AY.1080.001103
ORF1ab/nsp31787P1787SCcaTca11AY.1090.00074
ORF1ab/nsp31787P1787SCcaTca11AY.1170.000085
ORF1ab/nsp31787P1787SCcaTca11AY.120.000316
ORF1ab/nsp31787P1787SCcaTca11AY.120.2.10.000498
ORF1ab/nsp31787P1787SCcaTca11AY.140.000088
ORF1ab/nsp31787P1787SCcaTca11AY.320.000532
ORF1ab/nsp31787P1787SCcaTca11AY.330.000067
ORF1ab/nsp31787P1787SCcaTca11AY.34.10.00051
ORF1ab/nsp31787P1787SCcaTca11AY.39.10.00004
ORF1ab/nsp31787P1787SCcaTca11AY.4.50.000107
ORF1ab/nsp31787P1787SCcaTca11AY.450.000122
ORF1ab/nsp31787P1787SCcaTca11AY.46.40.000165
ORF1ab/nsp31787P1787SCcaTca11AY.46.60.000072
ORF1ab/nsp31787P1787SCcaTca11AY.500.000799
ORF1ab/nsp31787P1787SCcaTca11AY.590.00053
ORF1ab/nsp31787P1787SCcaTca11AY.620.000436
ORF1ab/nsp31787P1787SCcaTca11AY.740.000116
ORF1ab/nsp31787P1787SCcaTca11AY.840.000437
ORF1ab/nsp31787P1787SCcaTca11AY.9.2.10.001976
ORF1ab/nsp31787P1787SCcaTca11AY.980.000079
ORF1ab/nsp31787P1787SCcaTca11AY.98.10.000048
ORF1ab/nsp31787P1787SCcaTca11AY.99.20.000092
ORF1ab/nsp31787P1787SCcaTca11B.1.1.1920.002309
ORF1ab/nsp31787P1787SCcaTca11B.1.1.2160.00089
ORF1ab/nsp31787P1787SCcaTca11B.1.1.2680.014925
ORF1ab/nsp31787P1787SCcaTca11B.1.1.3180.000302
ORF1ab/nsp31787P1787SCcaTca11B.1.1.3350.012987
ORF1ab/nsp31787P1787SCcaTca11B.1.1.3370.003597
ORF1ab/nsp31787P1787SCcaTca11B.1.1.3470.018182
ORF1ab/nsp31787P1787SCcaTca11B.1.1.3480.000796
ORF1ab/nsp31787P1787SCcaTca11B.1.1.390.00051
ORF1ab/nsp31787P1787SCcaTca11B.1.1.4640.001473
ORF1ab/nsp31787P1787SCcaTca11B.1.1.630.000386
ORF1ab/nsp31787P1787SCcaTca11B.1.1.700.000341
ORF1ab/nsp31787P1787SCcaTca11B.1.1280.000635
ORF1ab/nsp31787P1787SCcaTca11B.1.160.230.004831
ORF1ab/nsp31787P1787SCcaTca11B.1.160.330.004425
ORF1ab/nsp31787P1787SCcaTca11B.1.177.210.000076
ORF1ab/nsp31787P1787SCcaTca11B.1.177.440.000519
ORF1ab/nsp31787P1787SCcaTca11B.1.2390.001221
ORF1ab/nsp31787P1787SCcaTca11B.1.258.170.000104
ORF1ab/nsp31787P1787SCcaTca11B.1.3360.002439
ORF1ab/nsp31787P1787SCcaTca11B.1.3500.002933
ORF1ab/nsp31787P1787SCcaTca11B.1.3510.00003
ORF1ab/nsp31787P1787SCcaTca11B.1.351.50.0006
ORF1ab/nsp31787P1787SCcaTca11B.1.36.160.001425
ORF1ab/nsp31787P1787SCcaTca11B.1.36.290.000517
ORF1ab/nsp31787P1787SCcaTca11B.1.36.310.001751
ORF1ab/nsp31787P1787SCcaTca11B.1.36.80.001
ORF1ab/nsp31787P1787SCcaTca11B.1.3610.001289
ORF1ab/nsp31787P1787SCcaTca11B.1.3690.000285
ORF1ab/nsp31787P1787SCcaTca11B.1.3750.00082
ORF1ab/nsp31787P1787SCcaTca11B.1.4060.006061
ORF1ab/nsp31787P1787SCcaTca11B.1.4280.00102
ORF1ab/nsp31787P1787SCcaTca11B.1.438.10.000107
ORF1ab/nsp31787P1787SCcaTca11B.1.5680.001111
ORF1ab/nsp31787P1787SCcaTca11B.1.6370.000073
ORF1ab/nsp31787P1787SCcaTca11C.360.000911
ORF1ab/nsp31787P1787SCcaTca11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.