CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1785 | N1785S | N2603S | nonsyn | aAc | aGc | 2644 | 2643 | 0.999622 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785S | N2603S | nonsyn | aAC | aGT | 2644 | 1 | 0.000378215 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785N | N2603N | syn | aaC | aaT | 1389 | 1389 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785D | N2603D | nonsyn | Aac | Gac | 998 | 998 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785del | N2603del | del | AAC | --- | 91 | 91 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785I | N2603I | nonsyn | aAc | aTc | 10 | 10 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785K | N2603K | nonsyn | aaC | aaA | 10 | 8 | 0.8 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785K | N2603K | nonsyn | aaC | aaG | 10 | 2 | 0.2 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785Y | N2603Y | nonsyn | Aac | Tac | 6 | 5 | 0.833333 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785Y | N2603Y | nonsyn | AaC | TaT | 6 | 1 | 0.166667 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785del2 | N2603del2 | del | AAc | --c | 3 | 1 | 0.333333 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785del2 | N2603del2 | del | AAC | --N | 3 | 1 | 0.333333 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785del2 | N2603del2 | del | aAC | a-- | 3 | 1 | 0.333333 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785G | N2603G | nonsyn | AAc | GGc | 2 | 2 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785T | N2603T | nonsyn | aAc | aCc | 1 | 1 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785X | N2603X | nonsyn | AaC | TaA | 1 | 1 | 1 | 8072-8074 |
ORF1ab/nsp3 | 1785 | N1785del1 | N2603del1 | del | aaC | aa- | 1 | 1 | 1 | 8072-8074 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 2643 | 2644 | All | 0.000506 |
ORF1ab/nsp3 | 1785 | N1785S | aAC | aGT | 1 | 2644 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1437 | 1437 | B.1.617.2 | 0.005411 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1389 | 1389 | All | 0.000266 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 998 | 998 | All | 0.000191 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 853 | 853 | AY.43 | 0.003779 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 329 | 329 | B.1.1.204 | 1 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 317 | 317 | AY.4.2 | 0.006875 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 280 | 280 | B.1.1.7 | 0.000251 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 227 | 227 | B.1.177.77 | 0.164851 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 210 | 210 | B.1.1 | 0.00381 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 113 | 113 | B.1.1.133 | 0.957627 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 91 | 91 | All | 0.000017 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 80 | 80 | B.1.534 | 1 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 69 | 69 | B.1.429 | 0.001623 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 59 | 59 | AY.44 | 0.000359 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 55 | 55 | AY.4 | 0.000086 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 42 | 42 | B.1.1.418 | 0.954545 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 40 | 40 | AY.39 | 0.000988 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 35 | 35 | AY.46 | 0.003643 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 33 | 33 | B.1 | 0.000302 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 31 | 31 | B.1.466.2 | 0.012128 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 30 | 30 | B.1.1 | 0.000544 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 25 | 25 | AY.78 | 0.038521 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 24 | 24 | AY.13 | 0.003863 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 22 | 22 | B.1.160 | 0.000686 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 18 | 18 | B.1.1.222 | 0.003672 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 15 | 15 | B.1.177.62 | 0.017878 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 8 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaG | 2 | 10 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | B.1.1.201 | 0.243902 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 10 | 10 | B.1.396 | 0.007057 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 7 | 7 | AY.34.1 | 0.00357 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 7 | 7 | B.1.214 | 0.025641 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp3 | 1785 | N1785Y | Aac | Tac | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1785 | N1785Y | AaC | TaT | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 6 | 6 | B.1.147 | 0.004535 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 6 | 6 | B.1.509 | 0.005195 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | B.1.1.163 | 0.038168 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 5 | 5 | B.1.1.316 | 0.004625 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 5 | 5 | B.1.362 | 0.007704 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp3 | 1785 | N1785del2 | AAC | --N | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785del2 | aAC | a-- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785del2 | AAc | --c | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1785 | N1785G | AAc | GGc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1785 | N1785Y | Aac | Tac | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp3 | 1785 | N1785X | AaC | TaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785del1 | aaC | aa- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785T | aAc | aCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1785 | N1785T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1785 | N1785del2 | AAc | --c | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1785 | N1785G | AAc | GGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1785 | N1785del2 | AAC | --N | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1785 | N1785Y | Aac | Tac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1785 | N1785del2 | aAC | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1785 | N1785del1 | aaC | aa- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1785 | N1785Y | Aac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1785 | N1785X | AaC | TaA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1785 | N1785Y | Aac | Tac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1785 | N1785G | AAc | GGc | 1 | 1 | B.1.534 | 0.0125 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp3 | 1785 | N1785Y | AaC | TaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1785 | N1785S | aAc | aGc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1785 | N1785S | aAC | aGT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaA | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1785 | N1785I | aAc | aTc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1785 | N1785K | aaC | aaG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1785 | N1785D | Aac | Gac | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1785 | N1785N | aaC | aaT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1785 | N1785del | AAC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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