CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1781

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31781S1781SS2599SsyntcAtcG290228740.9903518060-8062
ORF1ab/nsp31781S1781SS2599SsyntcAtcT2902160.005513448060-8062
ORF1ab/nsp31781S1781SS2599SsyntcAtcC2902120.004135088060-8062
ORF1ab/nsp31781S1781delS2599deldelTCA---11811818060-8062
ORF1ab/nsp31781S1781AS2599AnonsynTcaGca616118060-8062
ORF1ab/nsp31781S1781LS2599LnonsyntCatTa343418060-8062
ORF1ab/nsp31781S1781XS2599XnonsyntCatGa28190.6785718060-8062
ORF1ab/nsp31781S1781XS2599XnonsyntCatAa2890.3214298060-8062
ORF1ab/nsp31781S1781PS2599PnonsynTcaCca650.8333338060-8062
ORF1ab/nsp31781S1781PS2599PnonsynTcACcG610.1666678060-8062
ORF1ab/nsp31781S1781TS2599TnonsynTcaAca3318060-8062
ORF1ab/nsp31781S1781VS2599VnonsynTCaGTa1118060-8062
ORF1ab/nsp31781S1781del2S2599del2delTCa--a1118060-8062
ORF1ab/nsp31781S1781del1S2599del1delTca-ca1118060-8062
ORF1ab/nsp31781S1781QS2599QnonsynTCaCAa1118060-8062

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31781S1781StcAtcG28742902All0.00055
ORF1ab/nsp31781S1781StcAtcT162902All0.000003
ORF1ab/nsp31781S1781StcAtcC122902All0.000002
ORF1ab/nsp31781S1781StcAtcG16451645AY.10.65097
ORF1ab/nsp31781S1781StcAtcG506506AY.60.020811
ORF1ab/nsp31781S1781delTCA---118118All0.000023
ORF1ab/nsp31781S1781StcAtcG9494AY.340.009115
ORF1ab/nsp31781S1781StcAtcG7576B.1.617.20.000282
ORF1ab/nsp31781S1781StcAtcC176B.1.617.20.000004
ORF1ab/nsp31781S1781StcAtcG6666B.1.3510.001962
ORF1ab/nsp31781S1781ATcaGca6161All0.000012
ORF1ab/nsp31781S1781ATcaGca5555AY.4.2.10.008194
ORF1ab/nsp31781S1781delTCA---5050B.1.1.70.000045
ORF1ab/nsp31781S1781StcAtcG4444AY.40.000068
ORF1ab/nsp31781S1781StcAtcG3643B.1.1.70.000032
ORF1ab/nsp31781S1781StcAtcT443B.1.1.70.000004
ORF1ab/nsp31781S1781StcAtcC343B.1.1.70.000003
ORF1ab/nsp31781S1781StcAtcG4141B.1.4270.00207
ORF1ab/nsp31781S1781StcAtcG3939AY.690.00728
ORF1ab/nsp31781S1781StcAtcG3737AY.1170.003127
ORF1ab/nsp31781S1781LtCatTa3434All0.000007
ORF1ab/nsp31781S1781StcAtcG3030AY.430.000133
ORF1ab/nsp31781S1781XtCatGa1928All0.000004
ORF1ab/nsp31781S1781XtCatAa928All0.000002
ORF1ab/nsp31781S1781StcAtcG2020B.1.6270.040404
ORF1ab/nsp31781S1781StcAtcG1616AY.30.000159
ORF1ab/nsp31781S1781StcAtcG1515AY.390.000371
ORF1ab/nsp31781S1781StcAtcG914P.10.000142
ORF1ab/nsp31781S1781StcAtcC514P.10.000079
ORF1ab/nsp31781S1781StcAtcG1313AY.980.001027
ORF1ab/nsp31781S1781LtCatTa1212B.1.1.70.000011
ORF1ab/nsp31781S1781delTCA---1111AY.40.000017
ORF1ab/nsp31781S1781StcAtcG1111B.1.177.641
ORF1ab/nsp31781S1781StcAtcG1010AY.330.000668
ORF1ab/nsp31781S1781StcAtcG910AY.440.000055
ORF1ab/nsp31781S1781StcAtcC110AY.440.000006
ORF1ab/nsp31781S1781StcAtcG99B.1.2210.000639
ORF1ab/nsp31781S1781XtCatGa99B.1.5250.001018
ORF1ab/nsp31781S1781StcAtcG88AY.250.000048
ORF1ab/nsp31781S1781StcAtcG78B.10.000064
ORF1ab/nsp31781S1781StcAtcT18B.10.000009
ORF1ab/nsp31781S1781XtCatGa88B.1.1.70.000007
ORF1ab/nsp31781S1781StcAtcG77AY.50.000145
ORF1ab/nsp31781S1781StcAtcG77B.1.10.000127
ORF1ab/nsp31781S1781StcAtcT77B.1.1.3050.027027
ORF1ab/nsp31781S1781PTcaCca56All0.000001
ORF1ab/nsp31781S1781PTcACcG16All0
ORF1ab/nsp31781S1781StcAtcG66AY.1180.000376
ORF1ab/nsp31781S1781delTCA---66B.10.000055
ORF1ab/nsp31781S1781StcAtcG55AY.4.10.003687
ORF1ab/nsp31781S1781StcAtcG55AY.90.000338
ORF1ab/nsp31781S1781LtCatTa55B.10.000046
ORF1ab/nsp31781S1781delTCA---55B.1.10.000091
ORF1ab/nsp31781S1781StcAtcG44AY.1030.000025
ORF1ab/nsp31781S1781StcAtcG44AY.260.000113
ORF1ab/nsp31781S1781delTCA---44AY.4.50.00043
ORF1ab/nsp31781S1781StcAtcG44AY.460.000416
ORF1ab/nsp31781S1781StcAtcG44AY.620.001743
ORF1ab/nsp31781S1781delTCA---44B.1.1770.000053
ORF1ab/nsp31781S1781StcAtcG34B.1.20.000026
ORF1ab/nsp31781S1781StcAtcT14B.1.20.000009
ORF1ab/nsp31781S1781StcAtcG44C.370.000464
ORF1ab/nsp31781S1781TTcaAca33All0.000001
ORF1ab/nsp31781S1781StcAtcG23AY.1020.000053
ORF1ab/nsp31781S1781StcAtcC13AY.1020.000027
ORF1ab/nsp31781S1781StcAtcG33AY.1050.001929
ORF1ab/nsp31781S1781StcAtcG33AY.1200.000112
ORF1ab/nsp31781S1781delTCA---33AY.250.000018
ORF1ab/nsp31781S1781StcAtcG33AY.290.000047
ORF1ab/nsp31781S1781delTCA---33AY.430.000013
ORF1ab/nsp31781S1781StcAtcG33AY.9.20.00011
ORF1ab/nsp31781S1781StcAtcG33AY.920.000862
ORF1ab/nsp31781S1781StcAtcG22AY.1130.000285
ORF1ab/nsp31781S1781StcAtcG22AY.130.000322
ORF1ab/nsp31781S1781StcAtcG12AY.190.00114
ORF1ab/nsp31781S1781StcAtcT12AY.190.00114
ORF1ab/nsp31781S1781StcAtcG22AY.230.000139
ORF1ab/nsp31781S1781LtCatTa22AY.30.00002
ORF1ab/nsp31781S1781LtCatTa22AY.40.000003
ORF1ab/nsp31781S1781StcAtcG22AY.450.000243
ORF1ab/nsp31781S1781StcAtcG22AY.670.000929
ORF1ab/nsp31781S1781StcAtcG22AY.750.000112
ORF1ab/nsp31781S1781StcAtcG22AY.840.000875
ORF1ab/nsp31781S1781StcAtcG22AY.850.000854
ORF1ab/nsp31781S1781StcAtcG22AY.9.10.000167
ORF1ab/nsp31781S1781StcAtcG22B0.000256
ORF1ab/nsp31781S1781delTCA---22B.1.1.3150.016949
ORF1ab/nsp31781S1781ATcaGca22B.1.1.70.000002
ORF1ab/nsp31781S1781LtCatTa22B.1.1770.000026
ORF1ab/nsp31781S1781StcAtcG22B.1.3610.002577
ORF1ab/nsp31781S1781StcAtcG22B.1.5460.007407
ORF1ab/nsp31781S1781ATcaGca22B.1.617.20.000008
ORF1ab/nsp31781S1781LtCatTa22B.1.617.20.000008
ORF1ab/nsp31781S1781delTCA---22B.1.617.20.000008
ORF1ab/nsp31781S1781StcAtcG22B.1.6370.000146
ORF1ab/nsp31781S1781delTCA---22D.20.00015
ORF1ab/nsp31781S1781StcAtcG22P.1.10.10.01626
ORF1ab/nsp31781S1781LtCatTa110.055556
ORF1ab/nsp31781S1781XtCatAa11A0.000387
ORF1ab/nsp31781S1781VTCaGTa11All0
ORF1ab/nsp31781S1781del1Tca-ca11All0
ORF1ab/nsp31781S1781del2TCa--a11All0
ORF1ab/nsp31781S1781QTCaCAa11All0
ORF1ab/nsp31781S1781PTcaCca11AW.10.003049
ORF1ab/nsp31781S1781StcAtcG11AY.1000.000046
ORF1ab/nsp31781S1781LtCatTa11AY.1030.000006
ORF1ab/nsp31781S1781StcAtcG11AY.1040.001984
ORF1ab/nsp31781S1781delTCA---11AY.1110.000183
ORF1ab/nsp31781S1781StcAtcG11AY.1160.000287
ORF1ab/nsp31781S1781PTcaCca11AY.1180.000063
ORF1ab/nsp31781S1781StcAtcG11AY.1190.000035
ORF1ab/nsp31781S1781delTCA---11AY.1190.000035
ORF1ab/nsp31781S1781StcAtcG11AY.120.000316
ORF1ab/nsp31781S1781delTCA---11AY.1200.000037
ORF1ab/nsp31781S1781StcAtcG11AY.1210.000135
ORF1ab/nsp31781S1781StcAtcG11AY.160.00038
ORF1ab/nsp31781S1781StcAtcG11AY.200.000039
ORF1ab/nsp31781S1781StcAtcG11AY.220.002092
ORF1ab/nsp31781S1781PTcaCca11AY.230.00007
ORF1ab/nsp31781S1781TTcaAca11AY.250.000006
ORF1ab/nsp31781S1781delTCA---11AY.330.000067
ORF1ab/nsp31781S1781StcAtcG11AY.34.10.00051
ORF1ab/nsp31781S1781ATcaGca11AY.4.20.000022
ORF1ab/nsp31781S1781StcAtcG11AY.4.50.000107
ORF1ab/nsp31781S1781XtCatAa11AY.430.000004
ORF1ab/nsp31781S1781LtCatTa11AY.430.000004
ORF1ab/nsp31781S1781del2TCa--a11AY.440.000006
ORF1ab/nsp31781S1781delTCA---11AY.46.20.000635
ORF1ab/nsp31781S1781StcAtcG11AY.46.40.000165
ORF1ab/nsp31781S1781StcAtcG11AY.46.50.000198
ORF1ab/nsp31781S1781StcAtcG11AY.46.60.000072
ORF1ab/nsp31781S1781StcAtcG11AY.470.000031
ORF1ab/nsp31781S1781StcAtcG11AY.5.30.000337
ORF1ab/nsp31781S1781XtCatAa11AY.520.000814
ORF1ab/nsp31781S1781StcAtcG11AY.650.000533
ORF1ab/nsp31781S1781delTCA---11AY.720.001361
ORF1ab/nsp31781S1781StcAtcG11AY.730.000665
ORF1ab/nsp31781S1781delTCA---11AY.750.000056
ORF1ab/nsp31781S1781StcAtcG11AY.770.001127
ORF1ab/nsp31781S1781StcAtcG11AY.780.001541
ORF1ab/nsp31781S1781StcAtcG11AY.820.001357
ORF1ab/nsp31781S1781StcAtcG11AY.870.000833
ORF1ab/nsp31781S1781StcAtcG11AY.950.000761
ORF1ab/nsp31781S1781LtCatTa11AY.980.000079
ORF1ab/nsp31781S1781XtCatAa11B0.000128
ORF1ab/nsp31781S1781XtCatAa11B.10.000009
ORF1ab/nsp31781S1781PTcaCca11B.1.10.000018
ORF1ab/nsp31781S1781LtCatTa11B.1.10.000018
ORF1ab/nsp31781S1781delTCA---11B.1.1.2360.006897
ORF1ab/nsp31781S1781LtCatTa11B.1.1.2990.012195
ORF1ab/nsp31781S1781delTCA---11B.1.1.3060.000438
ORF1ab/nsp31781S1781delTCA---11B.1.1.3110.000358
ORF1ab/nsp31781S1781StcAtcG11B.1.1.3260.001761
ORF1ab/nsp31781S1781StcAtcG11B.1.1.330.000421
ORF1ab/nsp31781S1781StcAtcT11B.1.1.370.000193
ORF1ab/nsp31781S1781PTcACcG11B.1.1.460.004367
ORF1ab/nsp31781S1781delTCA---11B.1.1.460.004367
ORF1ab/nsp31781S1781StcAtcG11B.1.1.5190.00004
ORF1ab/nsp31781S1781PTcaCca11B.1.1.70.000001
ORF1ab/nsp31781S1781del1Tca-ca11B.1.1.70.000001
ORF1ab/nsp31781S1781delTCA---11B.1.1.700.000341
ORF1ab/nsp31781S1781StcAtcG11B.1.1390.000733
ORF1ab/nsp31781S1781delTCA---11B.1.1400.018868
ORF1ab/nsp31781S1781StcAtcG11B.1.1570.002985
ORF1ab/nsp31781S1781StcAtcG11B.1.1600.000031
ORF1ab/nsp31781S1781LtCatTa11B.1.160.160.000929
ORF1ab/nsp31781S1781StcAtcG11B.1.160.260.002421
ORF1ab/nsp31781S1781ATcaGca11B.1.1620.005025
ORF1ab/nsp31781S1781delTCA---11B.1.177.160.000664
ORF1ab/nsp31781S1781delTCA---11B.1.177.180.00116
ORF1ab/nsp31781S1781delTCA---11B.1.177.60.000977
ORF1ab/nsp31781S1781delTCA---11B.1.177.620.001192
ORF1ab/nsp31781S1781LtCatTa11B.1.20.000009
ORF1ab/nsp31781S1781delTCA---11B.1.2420.018868
ORF1ab/nsp31781S1781delTCA---11B.1.258.110.000396
ORF1ab/nsp31781S1781XtCatAa11B.1.3010.005917
ORF1ab/nsp31781S1781XtCatGa11B.1.3110.000275
ORF1ab/nsp31781S1781StcAtcG11B.1.351.20.000303
ORF1ab/nsp31781S1781delTCA---11B.1.36.180.00042
ORF1ab/nsp31781S1781StcAtcG11B.1.4090.000781
ORF1ab/nsp31781S1781StcAtcG11B.1.5250.000113
ORF1ab/nsp31781S1781QTCaCAa11B.1.617.10.000129
ORF1ab/nsp31781S1781TTcaAca11B.1.617.20.000004
ORF1ab/nsp31781S1781XtCatAa11B.1.617.20.000004
ORF1ab/nsp31781S1781XtCatAa11B.1.6230.000536
ORF1ab/nsp31781S1781TTcaAca11B.1.6270.00202
ORF1ab/nsp31781S1781StcAtcG11B.1.6280.000352
ORF1ab/nsp31781S1781XtCatGa11B.1.6360.006711
ORF1ab/nsp31781S1781delTCA---11B.1.6380.052632
ORF1ab/nsp31781S1781StcAtcT11B.40.002208
ORF1ab/nsp31781S1781StcAtcG11B.6.60.000889
ORF1ab/nsp31781S1781XtCatAa11B.6.60.000889
ORF1ab/nsp31781S1781VTCaGTa11C.350.000774
ORF1ab/nsp31781S1781delTCA---11C.370.000116
ORF1ab/nsp31781S1781LtCatTa11D.20.000075
ORF1ab/nsp31781S1781delTCA---11P.1.150.000232
ORF1ab/nsp31781S1781StcAtcC11P.1.170.000162
ORF1ab/nsp31781S1781delTCA---11Q.10.000126
ORF1ab/nsp31781S1781delTCA---11Q.20.000613
ORF1ab/nsp31781S1781delTCA---11U.30.003861