CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 178

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3178D178YD996YnonsynGacTac1740174013251-3253
ORF1ab/nsp3178D178DD996DsyngaCgaT1044104413251-3253
ORF1ab/nsp3178D178ND996NnonsynGacAac68568513251-3253
ORF1ab/nsp3178D178GD996GnonsyngAcgGc2042020.9901963251-3253
ORF1ab/nsp3178D178GD996GnonsyngACgGA20410.004901963251-3253
ORF1ab/nsp3178D178GD996GnonsyngACgGG20410.004901963251-3253
ORF1ab/nsp3178D178delD996deldelGAC---717113251-3253
ORF1ab/nsp3178D178ED996EnonsyngaCgaA30270.93251-3253
ORF1ab/nsp3178D178ED996EnonsyngaCgaG3030.13251-3253
ORF1ab/nsp3178D178AD996AnonsyngAcgCc12110.9166673251-3253
ORF1ab/nsp3178D178AD996AnonsyngACgCA1210.08333333251-3253
ORF1ab/nsp3178D178HD996HnonsynGacCac4413251-3253
ORF1ab/nsp3178D178del2D996del2delgACg--2213251-3253
ORF1ab/nsp3178D178TD996TnonsynGAcACc210.53251-3253
ORF1ab/nsp3178D178TD996TnonsynGACACA210.53251-3253
ORF1ab/nsp3178D178KD996KnonsynGaCAaA1113251-3253
ORF1ab/nsp3178D178del1D996del1delGac-ac1113251-3253
ORF1ab/nsp3178D178VD996VnonsyngAcgTc1113251-3253

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3178D178YGacTac17401740All0.000333
ORF1ab/nsp3178D178DgaCgaT10441044All0.0002
ORF1ab/nsp3178D178NGacAac685685All0.000131
ORF1ab/nsp3178D178YGacTac581581AY.40.000904
ORF1ab/nsp3178D178NGacAac446446B.1.1.370.086017
ORF1ab/nsp3178D178DgaCgaT298298B.1.1.70.000267
ORF1ab/nsp3178D178GgAcgGc202204All0.000039
ORF1ab/nsp3178D178GgACgGG1204All0
ORF1ab/nsp3178D178GgACgGA1204All0
ORF1ab/nsp3178D178YGacTac106106B.1.617.20.000399
ORF1ab/nsp3178D178YGacTac102102B.1.1.70.000091
ORF1ab/nsp3178D178YGacTac102102B.1.20.000898
ORF1ab/nsp3178D178DgaCgaT9797B.10.000888
ORF1ab/nsp3178D178DgaCgaT9696AY.40.000149
ORF1ab/nsp3178D178delGAC---7171All0.000014
ORF1ab/nsp3178D178YGacTac6464D.20.004803
ORF1ab/nsp3178D178YGacTac6363B.1.2580.004192
ORF1ab/nsp3178D178NGacAac5959AY.40.000092
ORF1ab/nsp3178D178GgAcgGc5959B.1.20.00052
ORF1ab/nsp3178D178YGacTac5858AY.30.000577
ORF1ab/nsp3178D178YGacTac5151B.1.10.000925
ORF1ab/nsp3178D178YGacTac4949AY.440.000298
ORF1ab/nsp3178D178GgAcgGc4747AY.430.000208
ORF1ab/nsp3178D178YGacTac4343AY.430.000191
ORF1ab/nsp3178D178DgaCgaT4242AY.250.000253
ORF1ab/nsp3178D178DgaCgaT4141B.1.617.20.000154
ORF1ab/nsp3178D178DgaCgaT3737B.1.1.170.616667
ORF1ab/nsp3178D178DgaCgaT3636B.1.5170.015371
ORF1ab/nsp3178D178NGacAac3434B.1.617.20.000128
ORF1ab/nsp3178D178EgaCgaA2730All0.000005
ORF1ab/nsp3178D178EgaCgaG330All0.000001
ORF1ab/nsp3178D178YGacTac3030B.10.000275
ORF1ab/nsp3178D178DgaCgaT3030B.1.6370.002192
ORF1ab/nsp3178D178YGacTac2929B.1.80.057199
ORF1ab/nsp3178D178DgaCgaT2727B.1.20.000238
ORF1ab/nsp3178D178DgaCgaT2424AY.430.000106
ORF1ab/nsp3178D178NGacAac2323B.1.1.70.000021
ORF1ab/nsp3178D178YGacTac2222AY.460.00229
ORF1ab/nsp3178D178GgAcgGc2121B.1.617.20.000079
ORF1ab/nsp3178D178DgaCgaT2020AY.440.000122
ORF1ab/nsp3178D178YGacTac2020B.1.1600.000624
ORF1ab/nsp3178D178YGacTac1919AY.50.000392
ORF1ab/nsp3178D178DgaCgaT1717AY.1030.000106
ORF1ab/nsp3178D178DgaCgaT1717AY.30.000169
ORF1ab/nsp3178D178YGacTac1616AY.1000.000736
ORF1ab/nsp3178D178YGacTac1616AY.1030.000099
ORF1ab/nsp3178D178DgaCgaT1616P.10.000252
ORF1ab/nsp3178D178YGacTac1515AY.1020.000398
ORF1ab/nsp3178D178YGacTac1515AY.98.10.000726
ORF1ab/nsp3178D178GgAcgGc1515B.1.1600.000468
ORF1ab/nsp3178D178NGacAac1515B.1.20.000132
ORF1ab/nsp3178D178YGacTac1414AY.250.000084
ORF1ab/nsp3178D178YGacTac1414B.1.1.5190.000556
ORF1ab/nsp3178D178delGAC---1414B.1.1.70.000013
ORF1ab/nsp3178D178AgAcgCc1112All0.000002
ORF1ab/nsp3178D178AgACgCA112All0
ORF1ab/nsp3178D178YGacTac1212AY.360.001779
ORF1ab/nsp3178D178DgaCgaT1212B.1.2580.000799
ORF1ab/nsp3178D178YGacTac1212P.10.000189
ORF1ab/nsp3178D178YGacTac1111AY.1190.000388
ORF1ab/nsp3178D178DgaCgaT1111AY.640.006548
ORF1ab/nsp3178D178YGacTac1111B.1.1.440.026506
ORF1ab/nsp3178D178DgaCgaT1111B.1.1600.000343
ORF1ab/nsp3178D178NGacAac1111P.10.000173
ORF1ab/nsp3178D178DgaCgaT1010AY.750.00056
ORF1ab/nsp3178D178DgaCgaT1010AY.9.20.000367
ORF1ab/nsp3178D178DgaCgaT1010B.1.1.280.003112
ORF1ab/nsp3178D178NGacAac1010B.1.1.330.004209
ORF1ab/nsp3178D178YGacTac1010B.1.2390.01221
ORF1ab/nsp3178D178DgaCgaT1010C.180.025907
ORF1ab/nsp3178D178NGacAac99AY.1030.000056
ORF1ab/nsp3178D178YGacTac99AY.200.00035
ORF1ab/nsp3178D178YGacTac99AY.390.000222
ORF1ab/nsp3178D178NGacAac99AY.430.00004
ORF1ab/nsp3178D178YGacTac99AY.610.000943
ORF1ab/nsp3178D178EgaCgaA99AY.750.000504
ORF1ab/nsp3178D178DgaCgaT99AY.760.043478
ORF1ab/nsp3178D178DgaCgaT99AY.970.015306
ORF1ab/nsp3178D178YGacTac99B.1.2430.000626
ORF1ab/nsp3178D178DgaCgaT99B.1.4290.000212
ORF1ab/nsp3178D178YGacTac88AY.290.000126
ORF1ab/nsp3178D178NGacAac88AY.440.000049
ORF1ab/nsp3178D178YGacTac88AY.60.000329
ORF1ab/nsp3178D178YGacTac88B.1.1.2240.114286
ORF1ab/nsp3178D178YGacTac88B.1.1.4200.008048
ORF1ab/nsp3178D178GgAcgGc77AY.1030.000043
ORF1ab/nsp3178D178DgaCgaT77AY.260.000198
ORF1ab/nsp3178D178DgaCgaT77AY.470.000218
ORF1ab/nsp3178D178DgaCgaT77B.1.10.000127
ORF1ab/nsp3178D178YGacTac77B.1.1770.000092
ORF1ab/nsp3178D178YGacTac77B.1.2210.000497
ORF1ab/nsp3178D178DgaCgaT77B.1.2430.000487
ORF1ab/nsp3178D178YGacTac66AY.470.000187
ORF1ab/nsp3178D178GgAcgGc66B.1.1.70.000005
ORF1ab/nsp3178D178YGacTac66B.1.177.810.001136
ORF1ab/nsp3178D178GgAcgGc66B.1.177.820.002864
ORF1ab/nsp3178D178YGacTac66C.370.000696
ORF1ab/nsp3178D178delGAC---55AY.1000.00023
ORF1ab/nsp3178D178DgaCgaT55AY.1020.000133
ORF1ab/nsp3178D178DgaCgaT55AY.1190.000177
ORF1ab/nsp3178D178YGacTac55AY.270.000324
ORF1ab/nsp3178D178GgAcgGc55AY.40.000008
ORF1ab/nsp3178D178YGacTac55AY.9.20.000184
ORF1ab/nsp3178D178NGacAac55B.10.000046
ORF1ab/nsp3178D178GgAcgGc35B.10.000027
ORF1ab/nsp3178D178GgACgGA15B.10.000009
ORF1ab/nsp3178D178GgACgGG15B.10.000009
ORF1ab/nsp3178D178YGacTac55B.1.1.3220.04386
ORF1ab/nsp3178D178YGacTac55B.1.3510.000149
ORF1ab/nsp3178D178GgAcgGc55B.1.5170.002135
ORF1ab/nsp3178D178DgaCgaT55P.1.70.001596
ORF1ab/nsp3178D178HGacCac44All0.000001
ORF1ab/nsp3178D178DgaCgaT44AY.200.000155
ORF1ab/nsp3178D178DgaCgaT44AY.230.000279
ORF1ab/nsp3178D178NGacAac44AY.30.00004
ORF1ab/nsp3178D178DgaCgaT44AY.300.001583
ORF1ab/nsp3178D178GgAcgGc44AY.390.000099
ORF1ab/nsp3178D178delGAC---44AY.440.000024
ORF1ab/nsp3178D178DgaCgaT44AY.50.000083
ORF1ab/nsp3178D178YGacTac44AY.680.001095
ORF1ab/nsp3178D178delGAC---44B.10.000037
ORF1ab/nsp3178D178YGacTac44B.1.1.3180.001207
ORF1ab/nsp3178D178DgaCgaT44B.1.177.570.001124
ORF1ab/nsp3178D178YGacTac44B.1.4280.004082
ORF1ab/nsp3178D178YGacTac44B.1.4560.013072
ORF1ab/nsp3178D178NGacAac44B.1.5400.038835
ORF1ab/nsp3178D178delGAC---44P.10.000063
ORF1ab/nsp3178D178NGacAac33AY.250.000018
ORF1ab/nsp3178D178YGacTac33AY.260.000085
ORF1ab/nsp3178D178DgaCgaT33AY.34.10.00153
ORF1ab/nsp3178D178DgaCgaT33AY.39.10.000119
ORF1ab/nsp3178D178NGacAac33AY.4.20.000065
ORF1ab/nsp3178D178DgaCgaT33AY.420.000121
ORF1ab/nsp3178D178GgAcgGc33AY.440.000018
ORF1ab/nsp3178D178YGacTac33AY.450.000365
ORF1ab/nsp3178D178YGacTac33AY.970.005102
ORF1ab/nsp3178D178YGacTac33B.1.1.1760.001318
ORF1ab/nsp3178D178EgaCgaA33B.1.1.3160.002775
ORF1ab/nsp3178D178delGAC---33B.1.1.330.001263
ORF1ab/nsp3178D178DgaCgaT33B.1.1.370.000579
ORF1ab/nsp3178D178YGacTac33B.1.1.630.001157
ORF1ab/nsp3178D178NGacAac33B.1.177.810.000568
ORF1ab/nsp3178D178DgaCgaT33B.1.3710.003367
ORF1ab/nsp3178D178YGacTac33B.1.466.20.001174
ORF1ab/nsp3178D178YGacTac33B.1.5960.000261
ORF1ab/nsp3178D178EgaCgaA33P.10.000047
ORF1ab/nsp3178D178YGacTac33P.1.140.000143
ORF1ab/nsp3178D178del2gACg--22All0
ORF1ab/nsp3178D178TGAcACc12All0
ORF1ab/nsp3178D178TGACACA12All0
ORF1ab/nsp3178D178delGAC---22AY.1030.000012
ORF1ab/nsp3178D178YGacTac22AY.1170.000169
ORF1ab/nsp3178D178DgaCgaT22AY.1180.000125
ORF1ab/nsp3178D178delGAC---22AY.120.000632
ORF1ab/nsp3178D178GgAcgGc22AY.1200.000074
ORF1ab/nsp3178D178GgAcgGc22AY.1210.000271
ORF1ab/nsp3178D178DgaCgaT22AY.160.000759
ORF1ab/nsp3178D178HGacCac22AY.200.000078
ORF1ab/nsp3178D178EgaCgaA22AY.200.000078
ORF1ab/nsp3178D178YGacTac22AY.230.000139
ORF1ab/nsp3178D178NGacAac22AY.390.000049
ORF1ab/nsp3178D178YGacTac22AY.39.10.000079
ORF1ab/nsp3178D178delGAC---22AY.40.000003
ORF1ab/nsp3178D178YGacTac22AY.4.20.000043
ORF1ab/nsp3178D178YGacTac22AY.46.60.000144
ORF1ab/nsp3178D178delGAC---22AY.50.000041
ORF1ab/nsp3178D178delGAC---22AY.710.00095
ORF1ab/nsp3178D178NGacAac22AY.740.000231
ORF1ab/nsp3178D178NGacAac22AY.750.000112
ORF1ab/nsp3178D178YGacTac22AY.840.000875
ORF1ab/nsp3178D178YGacTac22AY.90.000135
ORF1ab/nsp3178D178DgaCgaT22AY.90.000135
ORF1ab/nsp3178D178YGacTac22AY.9.10.000167
ORF1ab/nsp3178D178YGacTac22AY.99.20.000184
ORF1ab/nsp3178D178EgaCgaA12B.10.000009
ORF1ab/nsp3178D178EgaCgaG12B.10.000009
ORF1ab/nsp3178D178NGacAac22B.1.10.000036
ORF1ab/nsp3178D178delGAC---22B.1.10.000036
ORF1ab/nsp3178D178GgAcgGc22B.1.1.1570.001826
ORF1ab/nsp3178D178DgaCgaT22B.1.1.1630.015267
ORF1ab/nsp3178D178NGacAac22B.1.1.2430.008163
ORF1ab/nsp3178D178YGacTac22B.1.1.280.000622
ORF1ab/nsp3178D178YGacTac22B.1.1.3370.007194
ORF1ab/nsp3178D178delGAC---22B.1.1.3480.001592
ORF1ab/nsp3178D178YGacTac22B.1.1.3560.017094
ORF1ab/nsp3178D178NGacAac22B.1.1.3780.014599
ORF1ab/nsp3178D178DgaCgaT22B.1.1.4340.000697
ORF1ab/nsp3178D178AgAcgCc22B.1.1.70.000002
ORF1ab/nsp3178D178DgaCgaT22B.1.1.700.000682
ORF1ab/nsp3178D178YGacTac22B.1.221.20.008032
ORF1ab/nsp3178D178YGacTac22B.1.2320.001075
ORF1ab/nsp3178D178YGacTac22B.1.2400.000431
ORF1ab/nsp3178D178DgaCgaT22B.1.3510.000059
ORF1ab/nsp3178D178delGAC---22B.1.351.20.000605
ORF1ab/nsp3178D178YGacTac22B.1.351.50.001199
ORF1ab/nsp3178D178DgaCgaT22B.1.360.000292
ORF1ab/nsp3178D178DgaCgaT22B.1.36.290.001035
ORF1ab/nsp3178D178YGacTac22B.1.4290.000047
ORF1ab/nsp3178D178DgaCgaT22B.1.5000.105263
ORF1ab/nsp3178D178DgaCgaT22B.1.5250.000226
ORF1ab/nsp3178D178DgaCgaT22B.1.6090.000959
ORF1ab/nsp3178D178YGacTac22B.1.617.10.000258
ORF1ab/nsp3178D178DgaCgaT22B.1.6210.000177
ORF1ab/nsp3178D178AgACgCA12B.290.003509
ORF1ab/nsp3178D178AgAcgCc12B.290.003509
ORF1ab/nsp3178D178TGACACA12B.290.003509
ORF1ab/nsp3178D178TGAcACc12B.290.003509
ORF1ab/nsp3178D178DgaCgaT22B.40.004415
ORF1ab/nsp3178D178YGacTac22B.400.000729
ORF1ab/nsp3178D178DgaCgaT22C.370.000232
ORF1ab/nsp3178D178delGAC---22N.60.014184
ORF1ab/nsp3178D178YGacTac22N.90.011905
ORF1ab/nsp3178D178AgAcgCc22P.1.140.000096
ORF1ab/nsp3178D178del2gACg--11A0.000387
ORF1ab/nsp3178D178YGacTac11A0.000387
ORF1ab/nsp3178D178DgaCgaT11A0.000387
ORF1ab/nsp3178D178YGacTac11A.10.000282
ORF1ab/nsp3178D178DgaCgaT11A.10.000282
ORF1ab/nsp3178D178YGacTac11A.2.50.000499
ORF1ab/nsp3178D178VgAcgTc11A.2.50.000499
ORF1ab/nsp3178D178DgaCgaT11AD.20.000219
ORF1ab/nsp3178D178VgAcgTc11All0
ORF1ab/nsp3178D178del1Gac-ac11All0
ORF1ab/nsp3178D178KGaCAaA11All0
ORF1ab/nsp3178D178GgAcgGc11AY.10.000396
ORF1ab/nsp3178D178YGacTac11AY.1010.00049
ORF1ab/nsp3178D178NGacAac11AY.1020.000027
ORF1ab/nsp3178D178HGacCac11AY.1030.000006
ORF1ab/nsp3178D178EgaCgaA11AY.1030.000006
ORF1ab/nsp3178D178delGAC---11AY.1080.001103
ORF1ab/nsp3178D178GgAcgGc11AY.1090.00074
ORF1ab/nsp3178D178YGacTac11AY.1100.000113
ORF1ab/nsp3178D178DgaCgaT11AY.1100.000113
ORF1ab/nsp3178D178delGAC---11AY.1130.000142
ORF1ab/nsp3178D178YGacTac11AY.120.000316
ORF1ab/nsp3178D178delGAC---11AY.1200.000037
ORF1ab/nsp3178D178YGacTac11AY.1200.000037
ORF1ab/nsp3178D178NGacAac11AY.120.2.10.000498
ORF1ab/nsp3178D178DgaCgaT11AY.140.000088
ORF1ab/nsp3178D178YGacTac11AY.140.000088
ORF1ab/nsp3178D178delGAC---11AY.200.000039
ORF1ab/nsp3178D178NGacAac11AY.230.00007
ORF1ab/nsp3178D178DgaCgaT11AY.240.000431
ORF1ab/nsp3178D178YGacTac11AY.240.000431
ORF1ab/nsp3178D178NGacAac11AY.260.000028
ORF1ab/nsp3178D178GgAcgGc11AY.30.00001
ORF1ab/nsp3178D178YGacTac11AY.3.10.000085
ORF1ab/nsp3178D178DgaCgaT11AY.320.000532
ORF1ab/nsp3178D178NGacAac11AY.330.000067
ORF1ab/nsp3178D178DgaCgaT11AY.330.000067
ORF1ab/nsp3178D178YGacTac11AY.330.000067
ORF1ab/nsp3178D178NGacAac11AY.360.000148
ORF1ab/nsp3178D178DgaCgaT11AY.390.000025
ORF1ab/nsp3178D178NGacAac11AY.39.10.00004
ORF1ab/nsp3178D178EgaCgaG11AY.4.20.000022
ORF1ab/nsp3178D178delGAC---11AY.4.20.000022
ORF1ab/nsp3178D178GgAcgGc11AY.4.50.000107
ORF1ab/nsp3178D178NGacAac11AY.420.00004
ORF1ab/nsp3178D178delGAC---11AY.420.00004
ORF1ab/nsp3178D178YGacTac11AY.420.00004
ORF1ab/nsp3178D178GgAcgGc11AY.450.000122
ORF1ab/nsp3178D178YGacTac11AY.46.20.000635
ORF1ab/nsp3178D178NGacAac11AY.46.30.000934
ORF1ab/nsp3178D178NGacAac11AY.470.000031
ORF1ab/nsp3178D178AgAcgCc11AY.50.000021
ORF1ab/nsp3178D178DgaCgaT11AY.5.30.000337
ORF1ab/nsp3178D178GgAcgGc11AY.5.40.000277
ORF1ab/nsp3178D178YGacTac11AY.540.000095
ORF1ab/nsp3178D178GgAcgGc11AY.580.000907
ORF1ab/nsp3178D178DgaCgaT11AY.590.00053
ORF1ab/nsp3178D178DgaCgaT11AY.60.000041
ORF1ab/nsp3178D178YGacTac11AY.600.000938
ORF1ab/nsp3178D178delGAC---11AY.610.000105
ORF1ab/nsp3178D178GgAcgGc11AY.610.000105
ORF1ab/nsp3178D178NGacAac11AY.610.000105
ORF1ab/nsp3178D178DgaCgaT11AY.630.000387
ORF1ab/nsp3178D178YGacTac11AY.690.000187
ORF1ab/nsp3178D178GgAcgGc11AY.690.000187
ORF1ab/nsp3178D178YGacTac11AY.70.000196
ORF1ab/nsp3178D178NGacAac11AY.710.000475
ORF1ab/nsp3178D178YGacTac11AY.750.000056
ORF1ab/nsp3178D178GgAcgGc11AY.750.000056
ORF1ab/nsp3178D178delGAC---11AY.75.10.00018
ORF1ab/nsp3178D178DgaCgaT11AY.840.000437
ORF1ab/nsp3178D178DgaCgaT11AY.880.000884
ORF1ab/nsp3178D178delGAC---11AY.90.000068
ORF1ab/nsp3178D178YGacTac11AY.910.00073
ORF1ab/nsp3178D178DgaCgaT11AY.920.000287
ORF1ab/nsp3178D178YGacTac11AY.920.000287
ORF1ab/nsp3178D178YGacTac11AY.940.000443
ORF1ab/nsp3178D178DgaCgaT11B0.000128
ORF1ab/nsp3178D178NGacAac11B0.000128
ORF1ab/nsp3178D178DgaCgaT11B.1.1.1570.000913
ORF1ab/nsp3178D178YGacTac11B.1.1.2140.000055
ORF1ab/nsp3178D178DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp3178D178DgaCgaT11B.1.1.250.000569
ORF1ab/nsp3178D178NGacAac11B.1.1.2540.011236
ORF1ab/nsp3178D178del1Gac-ac11B.1.1.2840.000107
ORF1ab/nsp3178D178DgaCgaT11B.1.1.2940.001266
ORF1ab/nsp3178D178DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp3178D178DgaCgaT11B.1.1.3070.002532
ORF1ab/nsp3178D178YGacTac11B.1.1.3150.008475
ORF1ab/nsp3178D178YGacTac11B.1.1.3170.000412
ORF1ab/nsp3178D178YGacTac11B.1.1.330.000421
ORF1ab/nsp3178D178EgaCgaG11B.1.1.3350.012987
ORF1ab/nsp3178D178YGacTac11B.1.1.3510.002793
ORF1ab/nsp3178D178YGacTac11B.1.1.3550.015385
ORF1ab/nsp3178D178YGacTac11B.1.1.4040.015873
ORF1ab/nsp3178D178AgAcgCc11B.1.1.4110.014706
ORF1ab/nsp3178D178NGacAac11B.1.1.4340.000349
ORF1ab/nsp3178D178NGacAac11B.1.1.4640.001473
ORF1ab/nsp3178D178delGAC---11B.1.1.500.000679
ORF1ab/nsp3178D178DgaCgaT11B.1.1.630.000386
ORF1ab/nsp3178D178EgaCgaA11B.1.1.70.000001
ORF1ab/nsp3178D178GgAcgGc11B.1.110.30.000718
ORF1ab/nsp3178D178NGacAac11B.1.1600.000031
ORF1ab/nsp3178D178YGacTac11B.1.1700.00431
ORF1ab/nsp3178D178NGacAac11B.1.1770.000013
ORF1ab/nsp3178D178AgAcgCc11B.1.177.120.000152
ORF1ab/nsp3178D178DgaCgaT11B.1.177.450.000381
ORF1ab/nsp3178D178DgaCgaT11B.1.177.560.000668
ORF1ab/nsp3178D178delGAC---11B.1.177.80.000752
ORF1ab/nsp3178D178delGAC---11B.1.177.830.001481
ORF1ab/nsp3178D178delGAC---11B.1.177.860.000183
ORF1ab/nsp3178D178AgAcgCc11B.1.20.000009
ORF1ab/nsp3178D178del2gACg--11B.1.20.000009
ORF1ab/nsp3178D178EgaCgaA11B.1.20.000009
ORF1ab/nsp3178D178YGacTac11B.1.2060.000816
ORF1ab/nsp3178D178delGAC---11B.1.2100.002132
ORF1ab/nsp3178D178GgAcgGc11B.1.2210.000071
ORF1ab/nsp3178D178HGacCac11B.1.2210.000071
ORF1ab/nsp3178D178DgaCgaT11B.1.2340.000132
ORF1ab/nsp3178D178YGacTac11B.1.2340.000132
ORF1ab/nsp3178D178YGacTac11B.1.2360.002053
ORF1ab/nsp3178D178EgaCgaA11B.1.2400.000216
ORF1ab/nsp3178D178DgaCgaT11B.1.2410.000812
ORF1ab/nsp3178D178NGacAac11B.1.2580.000067
ORF1ab/nsp3178D178GgAcgGc11B.1.2580.000067
ORF1ab/nsp3178D178YGacTac11B.1.258.170.000104
ORF1ab/nsp3178D178YGacTac11B.1.258.30.001675
ORF1ab/nsp3178D178GgAcgGc11B.1.3510.00003
ORF1ab/nsp3178D178DgaCgaT11B.1.351.30.000876
ORF1ab/nsp3178D178YGacTac11B.1.360.000146
ORF1ab/nsp3178D178DgaCgaT11B.1.36.160.001425
ORF1ab/nsp3178D178NGacAac11B.1.36.180.00042
ORF1ab/nsp3178D178EgaCgaA11B.1.36.390.002217
ORF1ab/nsp3178D178YGacTac11B.1.36.80.001
ORF1ab/nsp3178D178DgaCgaT11B.1.3690.000285
ORF1ab/nsp3178D178YGacTac11B.1.3720.010989
ORF1ab/nsp3178D178YGacTac11B.1.3960.000706
ORF1ab/nsp3178D178YGacTac11B.1.4050.012346
ORF1ab/nsp3178D178YGacTac11B.1.4130.004255
ORF1ab/nsp3178D178YGacTac11B.1.4260.001009
ORF1ab/nsp3178D178YGacTac11B.1.4270.00005
ORF1ab/nsp3178D178DgaCgaT11B.1.4270.00005
ORF1ab/nsp3178D178NGacAac11B.1.4290.000024
ORF1ab/nsp3178D178delGAC---11B.1.4290.000024
ORF1ab/nsp3178D178YGacTac11B.1.4340.052632
ORF1ab/nsp3178D178YGacTac11B.1.4590.004082
ORF1ab/nsp3178D178NGacAac11B.1.4700.001404
ORF1ab/nsp3178D178YGacTac11B.1.4990.00105
ORF1ab/nsp3178D178NGacAac11B.1.5090.000866
ORF1ab/nsp3178D178NGacAac11B.1.5250.000113
ORF1ab/nsp3178D178YGacTac11B.1.5260.000024
ORF1ab/nsp3178D178DgaCgaT11B.1.5260.000024
ORF1ab/nsp3178D178DgaCgaT11B.1.5510.00129
ORF1ab/nsp3178D178AgAcgCc11B.1.5600.00463
ORF1ab/nsp3178D178EgaCgaA11B.1.5810.009434
ORF1ab/nsp3178D178YGacTac11B.1.5910.010638
ORF1ab/nsp3178D178AgAcgCc11B.1.5960.000087
ORF1ab/nsp3178D178GgAcgGc11B.1.5960.000087
ORF1ab/nsp3178D178YGacTac11B.1.6050.005952
ORF1ab/nsp3178D178EgaCgaA11B.1.617.20.000004
ORF1ab/nsp3178D178delGAC---11B.1.6210.000089
ORF1ab/nsp3178D178YGacTac11B.1.6210.000089
ORF1ab/nsp3178D178YGacTac11B.1.621.10.000506
ORF1ab/nsp3178D178DgaCgaT11B.1.80.001972
ORF1ab/nsp3178D178KGaCAaA11B.290.003509
ORF1ab/nsp3178D178EgaCgaA11B.290.003509
ORF1ab/nsp3178D178YGacTac11B.290.003509
ORF1ab/nsp3178D178NGacAac11B.290.003509
ORF1ab/nsp3178D178YGacTac11B.4.50.011905
ORF1ab/nsp3178D178NGacAac11B.400.000364
ORF1ab/nsp3178D178delGAC---11C.170.055556
ORF1ab/nsp3178D178YGacTac11D.30.005917
ORF1ab/nsp3178D178YGacTac11P.1.10.000318
ORF1ab/nsp3178D178YGacTac11P.1.120.000484
ORF1ab/nsp3178D178DgaCgaT11P.1.140.000048
ORF1ab/nsp3178D178delGAC---11Q.40.000455
ORF1ab/nsp3178D178EgaCgaA11Q.80.000165
ORF1ab/nsp3178D178delGAC---11R.10.00009
ORF1ab/nsp3178D178NGacAac11R.10.00009
ORF1ab/nsp3178D178DgaCgaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.