CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1778 | N1778N | N2596N | syn | aaT | aaC | 1479 | 1479 | 1 | 8051-8053 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1479 | 1479 | All | 0.000283 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 596 | 596 | B.1.1.7 | 0.000534 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 148 | 148 | B.1.617.2 | 0.000557 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 144 | 144 | AY.43 | 0.000638 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 97 | 97 | AY.103 | 0.000602 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 74 | 74 | AY.67 | 0.034355 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 48 | 48 | AY.34 | 0.004654 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 45 | 45 | B.1.1 | 0.000816 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 19 | 19 | B.1.1.222 | 0.003876 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 17 | 17 | AY.76 | 0.082126 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 10 | 10 | B.1.369 | 0.002852 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 7 | 7 | B.1.367 | 0.005547 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1778 | N1778N | aaT | aaC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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