CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1778

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31778N1778SN2596SnonsynaAtaGt459245900.9995648051-8053
ORF1ab/nsp31778N1778SN2596SnonsynAAtTCt459210.000217778051-8053
ORF1ab/nsp31778N1778SN2596SnonsynaATaGC459210.000217778051-8053
ORF1ab/nsp31778N1778NN2596NsynaaTaaC1479147918051-8053
ORF1ab/nsp31778N1778DN2596DnonsynAatGat32732718051-8053
ORF1ab/nsp31778N1778delN2596deldelAAT---11911918051-8053
ORF1ab/nsp31778N1778KN2596KnonsynaaTaaA50270.548051-8053
ORF1ab/nsp31778N1778KN2596KnonsynaaTaaG50230.468051-8053
ORF1ab/nsp31778N1778GN2596GnonsynAAtGGt393918051-8053
ORF1ab/nsp31778N1778IN2596InonsynaAtaTt131318051-8053
ORF1ab/nsp31778N1778TN2596TnonsynaAtaCt13120.9230778051-8053
ORF1ab/nsp31778N1778TN2596TnonsynaATaCA1310.07692318051-8053
ORF1ab/nsp31778N1778YN2596YnonsynAatTat4418051-8053
ORF1ab/nsp31778N1778del1N2596del1delaaTaa-310.3333338051-8053
ORF1ab/nsp31778N1778del1N2596del1delAat-at310.3333338051-8053
ORF1ab/nsp31778N1778del1N2596del1delAaT-aC310.3333338051-8053
ORF1ab/nsp31778N1778del2N2596del2delAAt--t1118051-8053

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31778N1778SaAtaGt45904592All0.000878
ORF1ab/nsp31778N1778SAAtTCt14592All0
ORF1ab/nsp31778N1778SaATaGC14592All0
ORF1ab/nsp31778N1778SaAtaGt32663266B.1.351.20.9882
ORF1ab/nsp31778N1778NaaTaaC14791479All0.000283
ORF1ab/nsp31778N1778SaAtaGt11181118B.1.351.30.979842
ORF1ab/nsp31778N1778NaaTaaC596596B.1.1.70.000534
ORF1ab/nsp31778N1778DAatGat327327All0.000063
ORF1ab/nsp31778N1778NaaTaaC148148B.1.617.20.000557
ORF1ab/nsp31778N1778NaaTaaC144144AY.430.000638
ORF1ab/nsp31778N1778delAAT---119119All0.000023
ORF1ab/nsp31778N1778NaaTaaC9797AY.1030.000602
ORF1ab/nsp31778N1778SaAtaGt8484B.1.3510.002497
ORF1ab/nsp31778N1778NaaTaaC7474AY.670.034355
ORF1ab/nsp31778N1778KaaTaaA2750All0.000005
ORF1ab/nsp31778N1778KaaTaaG2350All0.000004
ORF1ab/nsp31778N1778DAatGat4949B.1.1.70.000044
ORF1ab/nsp31778N1778NaaTaaC4848AY.340.004654
ORF1ab/nsp31778N1778delAAT---4848B.1.1.70.000043
ORF1ab/nsp31778N1778NaaTaaC4545B.1.10.000816
ORF1ab/nsp31778N1778GAAtGGt3939All0.000007
ORF1ab/nsp31778N1778NaaTaaC2727AY.40.000042
ORF1ab/nsp31778N1778DAatGat2525B.1.1770.000329
ORF1ab/nsp31778N1778DAatGat2525B.1.617.20.000094
ORF1ab/nsp31778N1778SaAtaGt2424AY.50.000496
ORF1ab/nsp31778N1778GAAtGGt2424B.1.351.20.007262
ORF1ab/nsp31778N1778DAatGat2323AY.40.000036
ORF1ab/nsp31778N1778NaaTaaC2323AY.440.00014
ORF1ab/nsp31778N1778KaaTaaG2222AY.40.000034
ORF1ab/nsp31778N1778DAatGat2222B.1.1.2970.049217
ORF1ab/nsp31778N1778NaaTaaC1919B.1.1.2220.003876
ORF1ab/nsp31778N1778SaAtaGt1919B.1.177.810.003597
ORF1ab/nsp31778N1778KaaTaaA1818B.1.1.70.000016
ORF1ab/nsp31778N1778DAatGat1717AY.260.000481
ORF1ab/nsp31778N1778NaaTaaC1717AY.760.082126
ORF1ab/nsp31778N1778NaaTaaC1515AY.1020.000398
ORF1ab/nsp31778N1778NaaTaaC1414AY.390.000346
ORF1ab/nsp31778N1778NaaTaaC1414B.1.5260.000329
ORF1ab/nsp31778N1778IaAtaTt1313All0.000002
ORF1ab/nsp31778N1778TaAtaCt1213All0.000002
ORF1ab/nsp31778N1778TaATaCA113All0
ORF1ab/nsp31778N1778delAAT---1313AY.40.00002
ORF1ab/nsp31778N1778SaAtaGt1313B.10.000119
ORF1ab/nsp31778N1778SaAtaGt1313B.1.1.70.000012
ORF1ab/nsp31778N1778GAAtGGt1313B.1.351.30.011394
ORF1ab/nsp31778N1778NaaTaaC1313P.10.000205
ORF1ab/nsp31778N1778DAatGat1212B.10.00011
ORF1ab/nsp31778N1778NaaTaaC1212B.1.20.000106
ORF1ab/nsp31778N1778DAatGat1212B.1.20.000106
ORF1ab/nsp31778N1778DAatGat1010AY.430.000044
ORF1ab/nsp31778N1778NaaTaaC1010B.10.000092
ORF1ab/nsp31778N1778NaaTaaC1010B.1.3690.002852
ORF1ab/nsp31778N1778DAatGat99AY.4.50.000967
ORF1ab/nsp31778N1778NaaTaaC99AY.98.10.000436
ORF1ab/nsp31778N1778DAatGat88AY.1020.000212
ORF1ab/nsp31778N1778DAatGat88AY.440.000049
ORF1ab/nsp31778N1778DAatGat77AY.270.000453
ORF1ab/nsp31778N1778DAatGat77AY.30.00007
ORF1ab/nsp31778N1778delAAT---77B.10.000064
ORF1ab/nsp31778N1778SaAtaGt77B.1.20.000062
ORF1ab/nsp31778N1778NaaTaaC77B.1.3670.005547
ORF1ab/nsp31778N1778DAatGat66AY.1030.000037
ORF1ab/nsp31778N1778DAatGat66AY.250.000036
ORF1ab/nsp31778N1778NaaTaaC66AY.39.10.000238
ORF1ab/nsp31778N1778SaAtaGt66AY.40.000009
ORF1ab/nsp31778N1778NaaTaaC66AY.7.10.000676
ORF1ab/nsp31778N1778NaaTaaC66AY.90.000406
ORF1ab/nsp31778N1778delAAT---66B.1.10.000109
ORF1ab/nsp31778N1778DAatGat66B.1.1.5190.000238
ORF1ab/nsp31778N1778NaaTaaC66B.1.4290.000141
ORF1ab/nsp31778N1778NaaTaaC55AY.1180.000313
ORF1ab/nsp31778N1778NaaTaaC55AY.250.00003
ORF1ab/nsp31778N1778SaAtaGt45AY.250.000024
ORF1ab/nsp31778N1778SAAtTCt15AY.250.000006
ORF1ab/nsp31778N1778DAatGat55AY.99.20.000461
ORF1ab/nsp31778N1778DAatGat55B.1.1.700.001705
ORF1ab/nsp31778N1778delAAT---55B.1.1770.000066
ORF1ab/nsp31778N1778NaaTaaC55B.1.2210.000355
ORF1ab/nsp31778N1778YAatTat44All0.000001
ORF1ab/nsp31778N1778SaAtaGt44AY.1200.000149
ORF1ab/nsp31778N1778NaaTaaC44AY.260.000113
ORF1ab/nsp31778N1778NaaTaaC44AY.30.00004
ORF1ab/nsp31778N1778delAAT---44AY.4.50.00043
ORF1ab/nsp31778N1778DAatGat44AY.980.000316
ORF1ab/nsp31778N1778DAatGat44B.1.10.000073
ORF1ab/nsp31778N1778TaAtaCt34B.1.1.70.000003
ORF1ab/nsp31778N1778TaATaCA14B.1.1.70.000001
ORF1ab/nsp31778N1778SaAtaGt44B.1.1770.000053
ORF1ab/nsp31778N1778KaaTaaA44B.1.20.000035
ORF1ab/nsp31778N1778NaaTaaC44B.1.3510.000119
ORF1ab/nsp31778N1778DAatGat44B.1.5780.071429
ORF1ab/nsp31778N1778DAatGat44B.1.6270.008081
ORF1ab/nsp31778N1778NaaTaaC44N.50.007067
ORF1ab/nsp31778N1778del1aaTaa-13All0
ORF1ab/nsp31778N1778del1Aat-at13All0
ORF1ab/nsp31778N1778del1AaT-aC13All0
ORF1ab/nsp31778N1778NaaTaaC33AY.140.000264
ORF1ab/nsp31778N1778NaaTaaC33AY.200.000117
ORF1ab/nsp31778N1778delAAT---33AY.250.000018
ORF1ab/nsp31778N1778NaaTaaC33AY.3.10.000256
ORF1ab/nsp31778N1778NaaTaaC33AY.4.20.000065
ORF1ab/nsp31778N1778SaAtaGt33AY.430.000013
ORF1ab/nsp31778N1778delAAT---33AY.430.000013
ORF1ab/nsp31778N1778DAatGat33AY.50.000062
ORF1ab/nsp31778N1778SaAtaGt33B.1.10.000054
ORF1ab/nsp31778N1778SaAtaGt33B.1.1.2140.000166
ORF1ab/nsp31778N1778SaAtaGt33B.1.1.2220.000612
ORF1ab/nsp31778N1778NaaTaaC33B.1.2060.002447
ORF1ab/nsp31778N1778IaAtaTt33B.1.6230.001609
ORF1ab/nsp31778N1778DAatGat33P.10.000047
ORF1ab/nsp31778N1778DAatGat33P.1.70.000958
ORF1ab/nsp31778N1778IaAtaTt22AM.40.007143
ORF1ab/nsp31778N1778NaaTaaC22AY.1130.000285
ORF1ab/nsp31778N1778NaaTaaC22AY.1190.000071
ORF1ab/nsp31778N1778DAatGat22AY.200.000078
ORF1ab/nsp31778N1778NaaTaaC22AY.290.000032
ORF1ab/nsp31778N1778DAatGat22AY.390.000049
ORF1ab/nsp31778N1778SaAtaGt22AY.4.20.000043
ORF1ab/nsp31778N1778NaaTaaC22AY.450.000243
ORF1ab/nsp31778N1778NaaTaaC22AY.460.000208
ORF1ab/nsp31778N1778DAatGat22AY.470.000062
ORF1ab/nsp31778N1778NaaTaaC22AY.690.000373
ORF1ab/nsp31778N1778NaaTaaC22AY.750.000112
ORF1ab/nsp31778N1778NaaTaaC22AY.9.2.10.003953
ORF1ab/nsp31778N1778YAatTat22B.10.000018
ORF1ab/nsp31778N1778NaaTaaC22B.1.1.2980.001724
ORF1ab/nsp31778N1778delAAT---22B.1.1.3150.016949
ORF1ab/nsp31778N1778DAatGat22B.1.1.330.000842
ORF1ab/nsp31778N1778DAatGat22B.1.1.4090.005666
ORF1ab/nsp31778N1778DAatGat22B.1.1.500.001358
ORF1ab/nsp31778N1778NaaTaaC22B.1.1.5260.007092
ORF1ab/nsp31778N1778NaaTaaC22B.1.1.630.000772
ORF1ab/nsp31778N1778NaaTaaC22B.1.1600.000062
ORF1ab/nsp31778N1778NaaTaaC22B.1.177.810.000379
ORF1ab/nsp31778N1778NaaTaaC22B.1.2430.000139
ORF1ab/nsp31778N1778TaAtaCt22B.1.2430.000139
ORF1ab/nsp31778N1778GAAtGGt22B.1.3510.000059
ORF1ab/nsp31778N1778NaaTaaC22B.1.6210.000177
ORF1ab/nsp31778N1778NaaTaaC22P.1.120.000968
ORF1ab/nsp31778N1778IaAtaTt22P.1.150.000465
ORF1ab/nsp31778N1778NaaTaaC22Q.30.00029
ORF1ab/nsp31778N1778NaaTaaC11A.10.000282
ORF1ab/nsp31778N1778NaaTaaC11A.23.10.000704
ORF1ab/nsp31778N1778NaaTaaC11A.270.001656
ORF1ab/nsp31778N1778del2AAt--t11All0
ORF1ab/nsp31778N1778DAatGat11AU.10.001266
ORF1ab/nsp31778N1778SaAtaGt11AY.1030.000006
ORF1ab/nsp31778N1778del2AAt--t11AY.1030.000006
ORF1ab/nsp31778N1778KaaTaaA11AY.1030.000006
ORF1ab/nsp31778N1778NaaTaaC11AY.1060.000335
ORF1ab/nsp31778N1778delAAT---11AY.1110.000183
ORF1ab/nsp31778N1778DAatGat11AY.1130.000142
ORF1ab/nsp31778N1778SaAtaGt11AY.1160.000287
ORF1ab/nsp31778N1778DAatGat11AY.1180.000063
ORF1ab/nsp31778N1778delAAT---11AY.1190.000035
ORF1ab/nsp31778N1778TaAtaCt11AY.1190.000035
ORF1ab/nsp31778N1778DAatGat11AY.120.000316
ORF1ab/nsp31778N1778NaaTaaC11AY.1210.000135
ORF1ab/nsp31778N1778SaAtaGt11AY.16.10.00047
ORF1ab/nsp31778N1778TaAtaCt11AY.250.000006
ORF1ab/nsp31778N1778TaAtaCt11AY.290.000016
ORF1ab/nsp31778N1778TaAtaCt11AY.30.00001
ORF1ab/nsp31778N1778DAatGat11AY.3.10.000085
ORF1ab/nsp31778N1778delAAT---11AY.330.000067
ORF1ab/nsp31778N1778DAatGat11AY.350.000233
ORF1ab/nsp31778N1778TaAtaCt11AY.40.000002
ORF1ab/nsp31778N1778DAatGat11AY.4.20.000022
ORF1ab/nsp31778N1778DAatGat11AY.420.00004
ORF1ab/nsp31778N1778KaaTaaA11AY.430.000004
ORF1ab/nsp31778N1778SaATaGC11AY.440.000006
ORF1ab/nsp31778N1778delAAT---11AY.46.20.000635
ORF1ab/nsp31778N1778NaaTaaC11AY.46.40.000165
ORF1ab/nsp31778N1778NaaTaaC11AY.5.30.000337
ORF1ab/nsp31778N1778DAatGat11AY.5.40.000277
ORF1ab/nsp31778N1778NaaTaaC11AY.550.000917
ORF1ab/nsp31778N1778KaaTaaA11AY.60.000041
ORF1ab/nsp31778N1778DAatGat11AY.690.000187
ORF1ab/nsp31778N1778DAatGat11AY.720.001361
ORF1ab/nsp31778N1778delAAT---11AY.720.001361
ORF1ab/nsp31778N1778NaaTaaC11AY.740.000116
ORF1ab/nsp31778N1778delAAT---11AY.750.000056
ORF1ab/nsp31778N1778DAatGat11AY.9.20.000037
ORF1ab/nsp31778N1778NaaTaaC11AY.910.00073
ORF1ab/nsp31778N1778DAatGat11AY.990.001049
ORF1ab/nsp31778N1778NaaTaaC11AY.99.20.000092
ORF1ab/nsp31778N1778NaaTaaC11B0.000128
ORF1ab/nsp31778N1778YAatTat11B0.000128
ORF1ab/nsp31778N1778IaAtaTt11B.1.10.000018
ORF1ab/nsp31778N1778delAAT---11B.1.1.2360.006897
ORF1ab/nsp31778N1778NaaTaaC11B.1.1.2840.000107
ORF1ab/nsp31778N1778delAAT---11B.1.1.3060.000438
ORF1ab/nsp31778N1778delAAT---11B.1.1.3110.000358
ORF1ab/nsp31778N1778NaaTaaC11B.1.1.3160.000925
ORF1ab/nsp31778N1778NaaTaaC11B.1.1.370.000193
ORF1ab/nsp31778N1778delAAT---11B.1.1.370.000193
ORF1ab/nsp31778N1778IaAtaTt11B.1.1.3850.004464
ORF1ab/nsp31778N1778NaaTaaC11B.1.1.4330.001425
ORF1ab/nsp31778N1778del1AaT-aC11B.1.1.460.004367
ORF1ab/nsp31778N1778delAAT---11B.1.1.460.004367
ORF1ab/nsp31778N1778NaaTaaC11B.1.1.5170.006803
ORF1ab/nsp31778N1778IaAtaTt11B.1.1.70.000001
ORF1ab/nsp31778N1778delAAT---11B.1.1.700.000341
ORF1ab/nsp31778N1778delAAT---11B.1.1400.018868
ORF1ab/nsp31778N1778DAatGat11B.1.1600.000031
ORF1ab/nsp31778N1778NaaTaaC11B.1.1770.000013
ORF1ab/nsp31778N1778delAAT---11B.1.177.160.000664
ORF1ab/nsp31778N1778delAAT---11B.1.177.180.00116
ORF1ab/nsp31778N1778NaaTaaC11B.1.177.40.000211
ORF1ab/nsp31778N1778NaaTaaC11B.1.177.440.000519
ORF1ab/nsp31778N1778delAAT---11B.1.177.60.000977
ORF1ab/nsp31778N1778delAAT---11B.1.177.620.001192
ORF1ab/nsp31778N1778NaaTaaC11B.1.177.720.00339
ORF1ab/nsp31778N1778YAatTat11B.1.177.790.002342
ORF1ab/nsp31778N1778DAatGat11B.1.177.810.000189
ORF1ab/nsp31778N1778NaaTaaC11B.1.1820.007246
ORF1ab/nsp31778N1778SaAtaGt11B.1.1920.009259
ORF1ab/nsp31778N1778SaAtaGt11B.1.2100.002132
ORF1ab/nsp31778N1778SaAtaGt11B.1.2340.000132
ORF1ab/nsp31778N1778IaAtaTt11B.1.2370.004975
ORF1ab/nsp31778N1778delAAT---11B.1.2420.018868
ORF1ab/nsp31778N1778DAatGat11B.1.2580.000067
ORF1ab/nsp31778N1778delAAT---11B.1.258.110.000396
ORF1ab/nsp31778N1778NaaTaaC11B.1.3190.003049
ORF1ab/nsp31778N1778DAatGat11B.1.3490.000715
ORF1ab/nsp31778N1778DAatGat11B.1.3510.00003
ORF1ab/nsp31778N1778SaAtaGt11B.1.351.50.0006
ORF1ab/nsp31778N1778DAatGat11B.1.360.000146
ORF1ab/nsp31778N1778delAAT---11B.1.36.180.00042
ORF1ab/nsp31778N1778NaaTaaC11B.1.36.290.000517
ORF1ab/nsp31778N1778SaAtaGt11B.1.36.80.001
ORF1ab/nsp31778N1778TaAtaCt11B.1.36.90.003215
ORF1ab/nsp31778N1778KaaTaaA11B.1.3690.000285
ORF1ab/nsp31778N1778KaaTaaA11B.1.3750.00082
ORF1ab/nsp31778N1778NaaTaaC11B.1.4000.000429
ORF1ab/nsp31778N1778DAatGat11B.1.4270.00005
ORF1ab/nsp31778N1778DAatGat11B.1.4290.000024
ORF1ab/nsp31778N1778NaaTaaC11B.1.438.10.000107
ORF1ab/nsp31778N1778DAatGat11B.1.466.20.000391
ORF1ab/nsp31778N1778NaaTaaC11B.1.466.20.000391
ORF1ab/nsp31778N1778IaAtaTt11B.1.5170.000427
ORF1ab/nsp31778N1778SaAtaGt11B.1.5540.004405
ORF1ab/nsp31778N1778NaaTaaC11B.1.575.10.002439
ORF1ab/nsp31778N1778NaaTaaC11B.1.5820.000491
ORF1ab/nsp31778N1778DAatGat11B.1.5950.000261
ORF1ab/nsp31778N1778DAatGat11B.1.5960.000087
ORF1ab/nsp31778N1778SaAtaGt11B.1.617.10.000129
ORF1ab/nsp31778N1778del1aaTaa-11B.1.617.20.000004
ORF1ab/nsp31778N1778KaaTaaG11B.1.617.20.000004
ORF1ab/nsp31778N1778delAAT---11B.1.617.20.000004
ORF1ab/nsp31778N1778SaAtaGt11B.1.617.20.000004
ORF1ab/nsp31778N1778TaAtaCt11B.1.617.20.000004
ORF1ab/nsp31778N1778SaAtaGt11B.1.6200.000946
ORF1ab/nsp31778N1778NaaTaaC11B.1.6310.003367
ORF1ab/nsp31778N1778delAAT---11B.1.6380.052632
ORF1ab/nsp31778N1778SaAtaGt11B.1.90.006173
ORF1ab/nsp31778N1778DAatGat11B.400.000364
ORF1ab/nsp31778N1778IaAtaTt11C.350.000774
ORF1ab/nsp31778N1778SaAtaGt11C.370.000116
ORF1ab/nsp31778N1778delAAT---11C.370.000116
ORF1ab/nsp31778N1778NaaTaaC11D.20.000075
ORF1ab/nsp31778N1778delAAT---11D.20.000075
ORF1ab/nsp31778N1778del1Aat-at11D.20.000075
ORF1ab/nsp31778N1778DAatGat11P.1.140.000048
ORF1ab/nsp31778N1778NaaTaaC11P.1.140.000048
ORF1ab/nsp31778N1778delAAT---11P.1.150.000232
ORF1ab/nsp31778N1778DAatGat11P.1.20.001156
ORF1ab/nsp31778N1778delAAT---11Q.10.000126
ORF1ab/nsp31778N1778delAAT---11Q.20.000613
ORF1ab/nsp31778N1778NaaTaaC11R.10.00009
ORF1ab/nsp31778N1778delAAT---11U.30.003861
ORF1ab/nsp31778N1778DAatGat11W.40.001351