CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1774 & Codon = gaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31774D1774DD2592DsyngaTgaC2246224618039-8041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31774D1774DgaTgaC22462246All0.00043
ORF1ab/nsp31774D1774DgaTgaC907907B.1.1.700.309345
ORF1ab/nsp31774D1774DgaTgaC633633AY.50.013071
ORF1ab/nsp31774D1774DgaTgaC196196B.1.3660.956098
ORF1ab/nsp31774D1774DgaTgaC102102B.1.617.20.000384
ORF1ab/nsp31774D1774DgaTgaC6363B.1.1.70.000056
ORF1ab/nsp31774D1774DgaTgaC6262AY.1020.001644
ORF1ab/nsp31774D1774DgaTgaC6262B.10.000568
ORF1ab/nsp31774D1774DgaTgaC3838B.1.1770.0005
ORF1ab/nsp31774D1774DgaTgaC1515B.1.10.000272
ORF1ab/nsp31774D1774DgaTgaC1414B.1.6190.012195
ORF1ab/nsp31774D1774DgaTgaC1212AY.430.000053
ORF1ab/nsp31774D1774DgaTgaC1010AY.390.000247
ORF1ab/nsp31774D1774DgaTgaC1010AY.7.20.005593
ORF1ab/nsp31774D1774DgaTgaC1010AY.9.20.000367
ORF1ab/nsp31774D1774DgaTgaC88B.1.160.320.034335
ORF1ab/nsp31774D1774DgaTgaC66AY.40.000009
ORF1ab/nsp31774D1774DgaTgaC66AY.440.000037
ORF1ab/nsp31774D1774DgaTgaC55AY.250.00003
ORF1ab/nsp31774D1774DgaTgaC55B.1.177.440.002595
ORF1ab/nsp31774D1774DgaTgaC55B.1.2210.000355
ORF1ab/nsp31774D1774DgaTgaC44AY.320.00213
ORF1ab/nsp31774D1774DgaTgaC44AY.4.50.00043
ORF1ab/nsp31774D1774DgaTgaC44AY.420.000161
ORF1ab/nsp31774D1774DgaTgaC33AY.1180.000188
ORF1ab/nsp31774D1774DgaTgaC33AY.900.002053
ORF1ab/nsp31774D1774DgaTgaC33B0.000383
ORF1ab/nsp31774D1774DgaTgaC33B.1.1600.000094
ORF1ab/nsp31774D1774DgaTgaC33B.1.3510.000089
ORF1ab/nsp31774D1774DgaTgaC22AY.1030.000012
ORF1ab/nsp31774D1774DgaTgaC22AY.30.00002
ORF1ab/nsp31774D1774DgaTgaC22AY.46.20.001271
ORF1ab/nsp31774D1774DgaTgaC22B.1.1.250.001137
ORF1ab/nsp31774D1774DgaTgaC22B.1.1.880.142857
ORF1ab/nsp31774D1774DgaTgaC22B.1.177.210.000153
ORF1ab/nsp31774D1774DgaTgaC22B.1.177.70.00033
ORF1ab/nsp31774D1774DgaTgaC22B.1.177.730.001133
ORF1ab/nsp31774D1774DgaTgaC22B.1.2430.000139
ORF1ab/nsp31774D1774DgaTgaC22B.1.5610.000794
ORF1ab/nsp31774D1774DgaTgaC11A0.000387
ORF1ab/nsp31774D1774DgaTgaC11AD.20.000219
ORF1ab/nsp31774D1774DgaTgaC11AY.1200.000037
ORF1ab/nsp31774D1774DgaTgaC11AY.200.000039
ORF1ab/nsp31774D1774DgaTgaC11AY.260.000028
ORF1ab/nsp31774D1774DgaTgaC11AY.330.000067
ORF1ab/nsp31774D1774DgaTgaC11AY.46.50.000198
ORF1ab/nsp31774D1774DgaTgaC11AY.5.30.000337
ORF1ab/nsp31774D1774DgaTgaC11AY.520.000814
ORF1ab/nsp31774D1774DgaTgaC11AY.560.001605
ORF1ab/nsp31774D1774DgaTgaC11AY.98.10.000048
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.2210.010101
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.3170.000412
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.4090.002833
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.560.017857
ORF1ab/nsp31774D1774DgaTgaC11B.1.177.310.011494
ORF1ab/nsp31774D1774DgaTgaC11B.1.20.000009
ORF1ab/nsp31774D1774DgaTgaC11B.1.2340.000132
ORF1ab/nsp31774D1774DgaTgaC11B.1.3010.005917
ORF1ab/nsp31774D1774DgaTgaC11B.1.3750.00082
ORF1ab/nsp31774D1774DgaTgaC11B.1.4430.004673
ORF1ab/nsp31774D1774DgaTgaC11B.1.5240.001406
ORF1ab/nsp31774D1774DgaTgaC11B.1.5260.000024
ORF1ab/nsp31774D1774DgaTgaC11B.1.5880.00091
ORF1ab/nsp31774D1774DgaTgaC11B.1.5900.004545
ORF1ab/nsp31774D1774DgaTgaC11B.1.6230.000536
ORF1ab/nsp31774D1774DgaTgaC11B.1.6270.00202
ORF1ab/nsp31774D1774DgaTgaC11B.6.60.000889
ORF1ab/nsp31774D1774DgaTgaC11P.1.10.000318
ORF1ab/nsp31774D1774DgaTgaC11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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