CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1774 & Codon = gCt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31774D1774AD2592AnonsyngAtgCt858518039-8041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31774D1774AgAtgCt8585All0.000016
ORF1ab/nsp31774D1774AgAtgCt2525P.1.150.005809
ORF1ab/nsp31774D1774AgAtgCt77AY.40.000011
ORF1ab/nsp31774D1774AgAtgCt77B.1.20.000062
ORF1ab/nsp31774D1774AgAtgCt55AY.9.20.000184
ORF1ab/nsp31774D1774AgAtgCt55B.1.617.20.000019
ORF1ab/nsp31774D1774AgAtgCt44AY.1030.000025
ORF1ab/nsp31774D1774AgAtgCt44B.1.1.70.000004
ORF1ab/nsp31774D1774AgAtgCt33B.1.177.540.001819
ORF1ab/nsp31774D1774AgAtgCt22AY.290.000032
ORF1ab/nsp31774D1774AgAtgCt22B.1.1.3480.001592
ORF1ab/nsp31774D1774AgAtgCt22B.1.3510.000059
ORF1ab/nsp31774D1774AgAtgCt22P.10.000032
ORF1ab/nsp31774D1774AgAtgCt22P.1.140.000096
ORF1ab/nsp31774D1774AgAtgCt11AY.1020.000027
ORF1ab/nsp31774D1774AgAtgCt11AY.350.000233
ORF1ab/nsp31774D1774AgAtgCt11AY.430.000004
ORF1ab/nsp31774D1774AgAtgCt11AY.440.000006
ORF1ab/nsp31774D1774AgAtgCt11AY.470.000031
ORF1ab/nsp31774D1774AgAtgCt11AY.520.000814
ORF1ab/nsp31774D1774AgAtgCt11B.10.000009
ORF1ab/nsp31774D1774AgAtgCt11B.1.1.2550.00303
ORF1ab/nsp31774D1774AgAtgCt11B.1.1.2840.000107
ORF1ab/nsp31774D1774AgAtgCt11B.1.1770.000013
ORF1ab/nsp31774D1774AgAtgCt11B.1.177.190.001431
ORF1ab/nsp31774D1774AgAtgCt11B.1.2210.000071
ORF1ab/nsp31774D1774AgAtgCt11B.1.6090.000479
ORF1ab/nsp31774D1774AgAtgCt11P.1.120.000484
ORF1ab/nsp31774D1774AgAtgCt11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.