CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1774 & Codon = Aat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31774D1774ND2592NnonsynGatAat56656618039-8041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31774D1774NGatAat566566All0.000108
ORF1ab/nsp31774D1774NGatAat284284AY.200.011038
ORF1ab/nsp31774D1774NGatAat129129B.1.617.20.000486
ORF1ab/nsp31774D1774NGatAat4040AY.40.000062
ORF1ab/nsp31774D1774NGatAat1717AY.1170.001437
ORF1ab/nsp31774D1774NGatAat99AY.390.000222
ORF1ab/nsp31774D1774NGatAat99AY.430.00004
ORF1ab/nsp31774D1774NGatAat77AY.450.000852
ORF1ab/nsp31774D1774NGatAat77AY.780.010786
ORF1ab/nsp31774D1774NGatAat55AY.1080.005513
ORF1ab/nsp31774D1774NGatAat55B.1.1.70.000004
ORF1ab/nsp31774D1774NGatAat55B.1.1770.000066
ORF1ab/nsp31774D1774NGatAat44AY.1110.000733
ORF1ab/nsp31774D1774NGatAat44AY.920.001149
ORF1ab/nsp31774D1774NGatAat33AY.440.000018
ORF1ab/nsp31774D1774NGatAat33P.1.170.000485
ORF1ab/nsp31774D1774NGatAat22AY.1020.000053
ORF1ab/nsp31774D1774NGatAat22AY.1190.000071
ORF1ab/nsp31774D1774NGatAat22AY.250.000012
ORF1ab/nsp31774D1774NGatAat22AY.550.001835
ORF1ab/nsp31774D1774NGatAat22AY.950.001522
ORF1ab/nsp31774D1774NGatAat22B.10.000018
ORF1ab/nsp31774D1774NGatAat22P.10.000032
ORF1ab/nsp31774D1774NGatAat11A.2.50.000499
ORF1ab/nsp31774D1774NGatAat11A.250.018182
ORF1ab/nsp31774D1774NGatAat11AY.1030.000006
ORF1ab/nsp31774D1774NGatAat11AY.1200.000037
ORF1ab/nsp31774D1774NGatAat11AY.130.000161
ORF1ab/nsp31774D1774NGatAat11AY.230.00007
ORF1ab/nsp31774D1774NGatAat11AY.270.000065
ORF1ab/nsp31774D1774NGatAat11AY.29.10.000221
ORF1ab/nsp31774D1774NGatAat11AY.30.00001
ORF1ab/nsp31774D1774NGatAat11AY.420.00004
ORF1ab/nsp31774D1774NGatAat11AY.460.000104
ORF1ab/nsp31774D1774NGatAat11AY.46.10.001027
ORF1ab/nsp31774D1774NGatAat11AY.540.000095
ORF1ab/nsp31774D1774NGatAat11AY.680.000274
ORF1ab/nsp31774D1774NGatAat11AY.790.001211
ORF1ab/nsp31774D1774NGatAat11AY.930.000273
ORF1ab/nsp31774D1774NGatAat11AY.980.000079
ORF1ab/nsp31774D1774NGatAat11B0.000128
ORF1ab/nsp31774D1774NGatAat11B.1.20.000009
ORF1ab/nsp31774D1774NGatAat11B.1.3110.000275
ORF1ab/nsp31774D1774NGatAat11B.1.3560.001727

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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