CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1774

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31774D1774DD2592DsyngaTgaC2246224618039-8041
ORF1ab/nsp31774D1774GD2592GnonsyngAtgGt60860818039-8041
ORF1ab/nsp31774D1774ND2592NnonsynGatAat56656618039-8041
ORF1ab/nsp31774D1774YD2592YnonsynGatTat3273150.9633038039-8041
ORF1ab/nsp31774D1774YD2592YnonsynGaTTaC327120.03669728039-8041
ORF1ab/nsp31774D1774delD2592deldelGAT---11511518039-8041
ORF1ab/nsp31774D1774VD2592VnonsyngAtgTt10310318039-8041
ORF1ab/nsp31774D1774AD2592AnonsyngAtgCt858518039-8041
ORF1ab/nsp31774D1774ED2592EnonsyngaTgaA30170.5666678039-8041
ORF1ab/nsp31774D1774ED2592EnonsyngaTgaG30130.4333338039-8041
ORF1ab/nsp31774D1774HD2592HnonsynGatCat7718039-8041
ORF1ab/nsp31774D1774del2D2592del2delgATg--540.88039-8041
ORF1ab/nsp31774D1774del2D2592del2delGAt--t510.28039-8041
ORF1ab/nsp31774D1774del1D2592del1delGat-at1118039-8041

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31774D1774DgaTgaC22462246All0.00043
ORF1ab/nsp31774D1774DgaTgaC907907B.1.1.700.309345
ORF1ab/nsp31774D1774DgaTgaC633633AY.50.013071
ORF1ab/nsp31774D1774GgAtgGt608608All0.000116
ORF1ab/nsp31774D1774NGatAat566566All0.000108
ORF1ab/nsp31774D1774YGatTat315327All0.00006
ORF1ab/nsp31774D1774YGaTTaC12327All0.000002
ORF1ab/nsp31774D1774NGatAat284284AY.200.011038
ORF1ab/nsp31774D1774GgAtgGt248248AY.23.10.103506
ORF1ab/nsp31774D1774DgaTgaC196196B.1.3660.956098
ORF1ab/nsp31774D1774NGatAat129129B.1.617.20.000486
ORF1ab/nsp31774D1774delGAT---115115All0.000022
ORF1ab/nsp31774D1774VgAtgTt103103All0.00002
ORF1ab/nsp31774D1774DgaTgaC102102B.1.617.20.000384
ORF1ab/nsp31774D1774AgAtgCt8585All0.000016
ORF1ab/nsp31774D1774VgAtgTt8181AY.40.000126
ORF1ab/nsp31774D1774YGatTat6366B.10.000577
ORF1ab/nsp31774D1774YGaTTaC366B.10.000027
ORF1ab/nsp31774D1774DgaTgaC6363B.1.1.70.000056
ORF1ab/nsp31774D1774DgaTgaC6262AY.1020.001644
ORF1ab/nsp31774D1774DgaTgaC6262B.10.000568
ORF1ab/nsp31774D1774GgAtgGt5959B.1.1.70.000053
ORF1ab/nsp31774D1774YGatTat5050AY.40.000078
ORF1ab/nsp31774D1774delGAT---4444B.1.1.70.000039
ORF1ab/nsp31774D1774YGatTat4141B.1.617.20.000154
ORF1ab/nsp31774D1774NGatAat4040AY.40.000062
ORF1ab/nsp31774D1774DgaTgaC3838B.1.1770.0005
ORF1ab/nsp31774D1774GgAtgGt3636B.1.20.000317
ORF1ab/nsp31774D1774EgaTgaA1730All0.000003
ORF1ab/nsp31774D1774EgaTgaG1330All0.000002
ORF1ab/nsp31774D1774AgAtgCt2525P.1.150.005809
ORF1ab/nsp31774D1774GgAtgGt2121AY.40.000033
ORF1ab/nsp31774D1774YGatTat1818AY.1200.000669
ORF1ab/nsp31774D1774NGatAat1717AY.1170.001437
ORF1ab/nsp31774D1774GgAtgGt1717B.1.617.20.000064
ORF1ab/nsp31774D1774YGatTat1616AY.1000.000736
ORF1ab/nsp31774D1774DgaTgaC1515B.1.10.000272
ORF1ab/nsp31774D1774GgAtgGt1515B.1.4290.000353
ORF1ab/nsp31774D1774DgaTgaC1414B.1.6190.012195
ORF1ab/nsp31774D1774GgAtgGt1313AY.1030.000081
ORF1ab/nsp31774D1774GgAtgGt1313AY.250.000078
ORF1ab/nsp31774D1774YGatTat1313C.36.3.10.035326
ORF1ab/nsp31774D1774delGAT---1212AY.40.000019
ORF1ab/nsp31774D1774DgaTgaC1212AY.430.000053
ORF1ab/nsp31774D1774YGatTat811AY.430.000035
ORF1ab/nsp31774D1774YGaTTaC311AY.430.000013
ORF1ab/nsp31774D1774DgaTgaC1010AY.390.000247
ORF1ab/nsp31774D1774GgAtgGt1010AY.440.000061
ORF1ab/nsp31774D1774DgaTgaC1010AY.7.20.005593
ORF1ab/nsp31774D1774DgaTgaC1010AY.9.20.000367
ORF1ab/nsp31774D1774YGatTat1010AY.99.20.000922
ORF1ab/nsp31774D1774GgAtgGt1010B.1.3110.002746
ORF1ab/nsp31774D1774YGatTat99AY.160.003417
ORF1ab/nsp31774D1774NGatAat99AY.390.000222
ORF1ab/nsp31774D1774NGatAat99AY.430.00004
ORF1ab/nsp31774D1774YGatTat99AY.440.000055
ORF1ab/nsp31774D1774YGatTat88AY.30.00008
ORF1ab/nsp31774D1774GgAtgGt88AY.360.001186
ORF1ab/nsp31774D1774YGatTat88B.1.1.70.000007
ORF1ab/nsp31774D1774DgaTgaC88B.1.160.320.034335
ORF1ab/nsp31774D1774HGatCat77All0.000001
ORF1ab/nsp31774D1774YGatTat77AY.1020.000186
ORF1ab/nsp31774D1774AgAtgCt77AY.40.000011
ORF1ab/nsp31774D1774NGatAat77AY.450.000852
ORF1ab/nsp31774D1774NGatAat77AY.780.010786
ORF1ab/nsp31774D1774delGAT---77B.10.000064
ORF1ab/nsp31774D1774GgAtgGt77B.1.1770.000092
ORF1ab/nsp31774D1774AgAtgCt77B.1.20.000062
ORF1ab/nsp31774D1774GgAtgGt77B.1.3510.000208
ORF1ab/nsp31774D1774GgAtgGt77B.1.5960.00061
ORF1ab/nsp31774D1774GgAtgGt77B.1.617.10.000903
ORF1ab/nsp31774D1774VgAtgTt77B.1.617.20.000026
ORF1ab/nsp31774D1774YGatTat66AY.1030.000037
ORF1ab/nsp31774D1774DgaTgaC66AY.40.000009
ORF1ab/nsp31774D1774GgAtgGt66AY.430.000027
ORF1ab/nsp31774D1774DgaTgaC66AY.440.000037
ORF1ab/nsp31774D1774delGAT---66B.1.1770.000079
ORF1ab/nsp31774D1774YGatTat66B.1.5960.000523
ORF1ab/nsp31774D1774EgaTgaA56B.1.617.20.000019
ORF1ab/nsp31774D1774EgaTgaG16B.1.617.20.000004
ORF1ab/nsp31774D1774del2gATg--45All0.000001
ORF1ab/nsp31774D1774del2GAt--t15All0
ORF1ab/nsp31774D1774NGatAat55AY.1080.005513
ORF1ab/nsp31774D1774GgAtgGt55AY.1190.000177
ORF1ab/nsp31774D1774DgaTgaC55AY.250.00003
ORF1ab/nsp31774D1774GgAtgGt55AY.290.000079
ORF1ab/nsp31774D1774EgaTgaA55AY.430.000022
ORF1ab/nsp31774D1774AgAtgCt55AY.9.20.000184
ORF1ab/nsp31774D1774GgAtgGt55AY.9.20.000184
ORF1ab/nsp31774D1774GgAtgGt55B.10.000046
ORF1ab/nsp31774D1774delGAT---55B.1.10.000091
ORF1ab/nsp31774D1774NGatAat55B.1.1.70.000004
ORF1ab/nsp31774D1774NGatAat55B.1.1770.000066
ORF1ab/nsp31774D1774DgaTgaC55B.1.177.440.002595
ORF1ab/nsp31774D1774DgaTgaC55B.1.2210.000355
ORF1ab/nsp31774D1774AgAtgCt55B.1.617.20.000019
ORF1ab/nsp31774D1774AgAtgCt44AY.1030.000025
ORF1ab/nsp31774D1774NGatAat44AY.1110.000733
ORF1ab/nsp31774D1774YGatTat44AY.1180.000251
ORF1ab/nsp31774D1774GgAtgGt44AY.230.000279
ORF1ab/nsp31774D1774DgaTgaC44AY.320.00213
ORF1ab/nsp31774D1774GgAtgGt44AY.330.000267
ORF1ab/nsp31774D1774delGAT---44AY.4.50.00043
ORF1ab/nsp31774D1774DgaTgaC44AY.4.50.00043
ORF1ab/nsp31774D1774DgaTgaC44AY.420.000161
ORF1ab/nsp31774D1774YGatTat24AY.420.00008
ORF1ab/nsp31774D1774YGaTTaC24AY.420.00008
ORF1ab/nsp31774D1774NGatAat44AY.920.001149
ORF1ab/nsp31774D1774GgAtgGt44B.1.10.000073
ORF1ab/nsp31774D1774AgAtgCt44B.1.1.70.000004
ORF1ab/nsp31774D1774EgaTgaG34B.1.1.70.000003
ORF1ab/nsp31774D1774EgaTgaA14B.1.1.70.000001
ORF1ab/nsp31774D1774EgaTgaG44B.1.1770.000053
ORF1ab/nsp31774D1774YGatTat44B.1.177.100.003512
ORF1ab/nsp31774D1774GgAtgGt44R.10.00036
ORF1ab/nsp31774D1774DgaTgaC33AY.1180.000188
ORF1ab/nsp31774D1774YGatTat33AY.290.000047
ORF1ab/nsp31774D1774NGatAat33AY.440.000018
ORF1ab/nsp31774D1774YGatTat33AY.460.000312
ORF1ab/nsp31774D1774GgAtgGt33AY.46.20.001906
ORF1ab/nsp31774D1774YGatTat33AY.90.000203
ORF1ab/nsp31774D1774DgaTgaC33AY.900.002053
ORF1ab/nsp31774D1774DgaTgaC33B0.000383
ORF1ab/nsp31774D1774GgAtgGt33B.1.1.3650.01676
ORF1ab/nsp31774D1774DgaTgaC33B.1.1600.000094
ORF1ab/nsp31774D1774GgAtgGt33B.1.177.350.002073
ORF1ab/nsp31774D1774AgAtgCt33B.1.177.540.001819
ORF1ab/nsp31774D1774DgaTgaC33B.1.3510.000089
ORF1ab/nsp31774D1774GgAtgGt33B.360.230769
ORF1ab/nsp31774D1774NGatAat33P.1.170.000485
ORF1ab/nsp31774D1774YGaTTaC12A0.000387
ORF1ab/nsp31774D1774YGatTat12A0.000387
ORF1ab/nsp31774D1774GgAtgGt22AY.1000.000092
ORF1ab/nsp31774D1774VgAtgTt22AY.1000.000092
ORF1ab/nsp31774D1774NGatAat22AY.1020.000053
ORF1ab/nsp31774D1774DgaTgaC22AY.1030.000012
ORF1ab/nsp31774D1774NGatAat22AY.1190.000071
ORF1ab/nsp31774D1774YGatTat22AY.250.000012
ORF1ab/nsp31774D1774del2gATg--22AY.250.000012
ORF1ab/nsp31774D1774NGatAat22AY.250.000012
ORF1ab/nsp31774D1774GgAtgGt22AY.270.000129
ORF1ab/nsp31774D1774AgAtgCt22AY.290.000032
ORF1ab/nsp31774D1774DgaTgaC22AY.30.00002
ORF1ab/nsp31774D1774EgaTgaG12AY.40.000002
ORF1ab/nsp31774D1774EgaTgaA12AY.40.000002
ORF1ab/nsp31774D1774delGAT---22AY.430.000009
ORF1ab/nsp31774D1774GgAtgGt22AY.460.000208
ORF1ab/nsp31774D1774DgaTgaC22AY.46.20.001271
ORF1ab/nsp31774D1774GgAtgGt22AY.46.60.000144
ORF1ab/nsp31774D1774YGatTat12AY.520.000814
ORF1ab/nsp31774D1774YGaTTaC12AY.520.000814
ORF1ab/nsp31774D1774GgAtgGt22AY.550.001835
ORF1ab/nsp31774D1774NGatAat22AY.550.001835
ORF1ab/nsp31774D1774GgAtgGt22AY.7.20.001119
ORF1ab/nsp31774D1774GgAtgGt22AY.930.000546
ORF1ab/nsp31774D1774NGatAat22AY.950.001522
ORF1ab/nsp31774D1774GgAtgGt22AY.99.20.000184
ORF1ab/nsp31774D1774YGaTTaC12B0.000128
ORF1ab/nsp31774D1774YGatTat12B0.000128
ORF1ab/nsp31774D1774NGatAat22B.10.000018
ORF1ab/nsp31774D1774HGatCat22B.1.10.000036
ORF1ab/nsp31774D1774YGatTat22B.1.10.000036
ORF1ab/nsp31774D1774EgaTgaA22B.1.10.000036
ORF1ab/nsp31774D1774HGatCat22B.1.1.1750.153846
ORF1ab/nsp31774D1774GgAtgGt22B.1.1.250.001137
ORF1ab/nsp31774D1774DgaTgaC22B.1.1.250.001137
ORF1ab/nsp31774D1774GgAtgGt22B.1.1.280.000622
ORF1ab/nsp31774D1774GgAtgGt22B.1.1.3060.000877
ORF1ab/nsp31774D1774delGAT---22B.1.1.3150.016949
ORF1ab/nsp31774D1774VgAtgTt22B.1.1.330.000842
ORF1ab/nsp31774D1774VgAtgTt22B.1.1.3330.002153
ORF1ab/nsp31774D1774AgAtgCt22B.1.1.3480.001592
ORF1ab/nsp31774D1774delGAT---22B.1.1.460.008734
ORF1ab/nsp31774D1774GgAtgGt22B.1.1.5190.000079
ORF1ab/nsp31774D1774DgaTgaC22B.1.1.880.142857
ORF1ab/nsp31774D1774EgaTgaA22B.1.177.180.00232
ORF1ab/nsp31774D1774DgaTgaC22B.1.177.210.000153
ORF1ab/nsp31774D1774DgaTgaC22B.1.177.70.00033
ORF1ab/nsp31774D1774DgaTgaC22B.1.177.730.001133
ORF1ab/nsp31774D1774GgAtgGt22B.1.2320.001075
ORF1ab/nsp31774D1774VgAtgTt22B.1.2340.000264
ORF1ab/nsp31774D1774YGatTat22B.1.2430.000139
ORF1ab/nsp31774D1774DgaTgaC22B.1.2430.000139
ORF1ab/nsp31774D1774AgAtgCt22B.1.3510.000059
ORF1ab/nsp31774D1774EgaTgaG22B.1.438.10.000215
ORF1ab/nsp31774D1774GgAtgGt22B.1.5400.019417
ORF1ab/nsp31774D1774DgaTgaC22B.1.5610.000794
ORF1ab/nsp31774D1774GgAtgGt22B.1.6210.000177
ORF1ab/nsp31774D1774YGatTat12B.1.6230.000536
ORF1ab/nsp31774D1774YGaTTaC12B.1.6230.000536
ORF1ab/nsp31774D1774GgAtgGt22B.1.6280.000705
ORF1ab/nsp31774D1774HGatCat22D.20.00015
ORF1ab/nsp31774D1774AgAtgCt22P.10.000032
ORF1ab/nsp31774D1774NGatAat22P.10.000032
ORF1ab/nsp31774D1774GgAtgGt22P.1.10.000635
ORF1ab/nsp31774D1774AgAtgCt22P.1.140.000096
ORF1ab/nsp31774D1774GgAtgGt110.055556
ORF1ab/nsp31774D1774DgaTgaC11A0.000387
ORF1ab/nsp31774D1774GgAtgGt11A.2.40.003367
ORF1ab/nsp31774D1774NGatAat11A.2.50.000499
ORF1ab/nsp31774D1774NGatAat11A.250.018182
ORF1ab/nsp31774D1774DgaTgaC11AD.20.000219
ORF1ab/nsp31774D1774del1Gat-at11All0
ORF1ab/nsp31774D1774AgAtgCt11AY.1020.000027
ORF1ab/nsp31774D1774NGatAat11AY.1030.000006
ORF1ab/nsp31774D1774delGAT---11AY.1110.000183
ORF1ab/nsp31774D1774GgAtgGt11AY.1170.000085
ORF1ab/nsp31774D1774GgAtgGt11AY.1180.000063
ORF1ab/nsp31774D1774delGAT---11AY.1190.000035
ORF1ab/nsp31774D1774YGatTat11AY.1190.000035
ORF1ab/nsp31774D1774NGatAat11AY.1200.000037
ORF1ab/nsp31774D1774DgaTgaC11AY.1200.000037
ORF1ab/nsp31774D1774YGatTat11AY.1210.000135
ORF1ab/nsp31774D1774NGatAat11AY.130.000161
ORF1ab/nsp31774D1774GgAtgGt11AY.130.000161
ORF1ab/nsp31774D1774GgAtgGt11AY.16.10.00047
ORF1ab/nsp31774D1774YGatTat11AY.20.000356
ORF1ab/nsp31774D1774DgaTgaC11AY.200.000039
ORF1ab/nsp31774D1774NGatAat11AY.230.00007
ORF1ab/nsp31774D1774delGAT---11AY.250.000006
ORF1ab/nsp31774D1774GgAtgGt11AY.260.000028
ORF1ab/nsp31774D1774DgaTgaC11AY.260.000028
ORF1ab/nsp31774D1774YGatTat11AY.260.000028
ORF1ab/nsp31774D1774NGatAat11AY.270.000065
ORF1ab/nsp31774D1774NGatAat11AY.29.10.000221
ORF1ab/nsp31774D1774NGatAat11AY.30.00001
ORF1ab/nsp31774D1774DgaTgaC11AY.330.000067
ORF1ab/nsp31774D1774delGAT---11AY.330.000067
ORF1ab/nsp31774D1774GgAtgGt11AY.340.000097
ORF1ab/nsp31774D1774AgAtgCt11AY.350.000233
ORF1ab/nsp31774D1774GgAtgGt11AY.39.20.001541
ORF1ab/nsp31774D1774GgAtgGt11AY.4.20.000022
ORF1ab/nsp31774D1774GgAtgGt11AY.4.2.10.000149
ORF1ab/nsp31774D1774YGatTat11AY.4.40.000409
ORF1ab/nsp31774D1774NGatAat11AY.420.00004
ORF1ab/nsp31774D1774GgAtgGt11AY.420.00004
ORF1ab/nsp31774D1774del2gATg--11AY.430.000004
ORF1ab/nsp31774D1774AgAtgCt11AY.430.000004
ORF1ab/nsp31774D1774AgAtgCt11AY.440.000006
ORF1ab/nsp31774D1774EgaTgaG11AY.440.000006
ORF1ab/nsp31774D1774VgAtgTt11AY.440.000006
ORF1ab/nsp31774D1774NGatAat11AY.460.000104
ORF1ab/nsp31774D1774NGatAat11AY.46.10.001027
ORF1ab/nsp31774D1774delGAT---11AY.46.20.000635
ORF1ab/nsp31774D1774DgaTgaC11AY.46.50.000198
ORF1ab/nsp31774D1774AgAtgCt11AY.470.000031
ORF1ab/nsp31774D1774YGatTat11AY.50.000021
ORF1ab/nsp31774D1774delGAT---11AY.50.000021
ORF1ab/nsp31774D1774DgaTgaC11AY.5.30.000337
ORF1ab/nsp31774D1774DgaTgaC11AY.520.000814
ORF1ab/nsp31774D1774AgAtgCt11AY.520.000814
ORF1ab/nsp31774D1774YGatTat11AY.530.000288
ORF1ab/nsp31774D1774GgAtgGt11AY.530.000288
ORF1ab/nsp31774D1774NGatAat11AY.540.000095
ORF1ab/nsp31774D1774DgaTgaC11AY.560.001605
ORF1ab/nsp31774D1774GgAtgGt11AY.60.000041
ORF1ab/nsp31774D1774VgAtgTt11AY.60.000041
ORF1ab/nsp31774D1774GgAtgGt11AY.610.000105
ORF1ab/nsp31774D1774NGatAat11AY.680.000274
ORF1ab/nsp31774D1774GgAtgGt11AY.690.000187
ORF1ab/nsp31774D1774VgAtgTt11AY.7.10.000113
ORF1ab/nsp31774D1774delGAT---11AY.720.001361
ORF1ab/nsp31774D1774GgAtgGt11AY.740.000116
ORF1ab/nsp31774D1774GgAtgGt11AY.750.000056
ORF1ab/nsp31774D1774delGAT---11AY.750.000056
ORF1ab/nsp31774D1774NGatAat11AY.790.001211
ORF1ab/nsp31774D1774GgAtgGt11AY.840.000437
ORF1ab/nsp31774D1774GgAtgGt11AY.90.000068
ORF1ab/nsp31774D1774GgAtgGt11AY.9.10.000084
ORF1ab/nsp31774D1774NGatAat11AY.930.000273
ORF1ab/nsp31774D1774NGatAat11AY.980.000079
ORF1ab/nsp31774D1774YGatTat11AY.98.10.000048
ORF1ab/nsp31774D1774EgaTgaA11AY.98.10.000048
ORF1ab/nsp31774D1774DgaTgaC11AY.98.10.000048
ORF1ab/nsp31774D1774GgAtgGt11AY.990.001049
ORF1ab/nsp31774D1774GgAtgGt11AZ.40.003356
ORF1ab/nsp31774D1774NGatAat11B0.000128
ORF1ab/nsp31774D1774AgAtgCt11B.10.000009
ORF1ab/nsp31774D1774YGatTat11B.1.1.1440.028571
ORF1ab/nsp31774D1774GgAtgGt11B.1.1.2140.000055
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.2210.010101
ORF1ab/nsp31774D1774delGAT---11B.1.1.2360.006897
ORF1ab/nsp31774D1774AgAtgCt11B.1.1.2550.00303
ORF1ab/nsp31774D1774AgAtgCt11B.1.1.2840.000107
ORF1ab/nsp31774D1774delGAT---11B.1.1.3060.000438
ORF1ab/nsp31774D1774delGAT---11B.1.1.3110.000358
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.3170.000412
ORF1ab/nsp31774D1774YGatTat11B.1.1.330.000421
ORF1ab/nsp31774D1774YGatTat11B.1.1.3480.000796
ORF1ab/nsp31774D1774delGAT---11B.1.1.370.000193
ORF1ab/nsp31774D1774GgAtgGt11B.1.1.370.000193
ORF1ab/nsp31774D1774GgAtgGt11B.1.1.390.00051
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.4090.002833
ORF1ab/nsp31774D1774VgAtgTt11B.1.1.4340.000349
ORF1ab/nsp31774D1774VgAtgTt11B.1.1.5190.00004
ORF1ab/nsp31774D1774DgaTgaC11B.1.1.560.017857
ORF1ab/nsp31774D1774del2gATg--11B.1.1.70.000001
ORF1ab/nsp31774D1774del1Gat-at11B.1.1.70.000001
ORF1ab/nsp31774D1774VgAtgTt11B.1.1.70.000001
ORF1ab/nsp31774D1774YGatTat11B.1.1.700.000341
ORF1ab/nsp31774D1774delGAT---11B.1.1.700.000341
ORF1ab/nsp31774D1774delGAT---11B.1.1400.018868
ORF1ab/nsp31774D1774GgAtgGt11B.1.1600.000031
ORF1ab/nsp31774D1774AgAtgCt11B.1.1770.000013
ORF1ab/nsp31774D1774del2GAt--t11B.1.1770.000013
ORF1ab/nsp31774D1774delGAT---11B.1.177.160.000664
ORF1ab/nsp31774D1774delGAT---11B.1.177.180.00116
ORF1ab/nsp31774D1774AgAtgCt11B.1.177.190.001431
ORF1ab/nsp31774D1774DgaTgaC11B.1.177.310.011494
ORF1ab/nsp31774D1774delGAT---11B.1.177.60.000977
ORF1ab/nsp31774D1774delGAT---11B.1.177.620.001192
ORF1ab/nsp31774D1774GgAtgGt11B.1.177.830.001481
ORF1ab/nsp31774D1774GgAtgGt11B.1.177.90.001332
ORF1ab/nsp31774D1774NGatAat11B.1.20.000009
ORF1ab/nsp31774D1774DgaTgaC11B.1.20.000009
ORF1ab/nsp31774D1774YGatTat11B.1.2060.000816
ORF1ab/nsp31774D1774AgAtgCt11B.1.2210.000071
ORF1ab/nsp31774D1774DgaTgaC11B.1.2340.000132
ORF1ab/nsp31774D1774GgAtgGt11B.1.2340.000132
ORF1ab/nsp31774D1774delGAT---11B.1.2420.018868
ORF1ab/nsp31774D1774delGAT---11B.1.258.110.000396
ORF1ab/nsp31774D1774GgAtgGt11B.1.2600.003344
ORF1ab/nsp31774D1774DgaTgaC11B.1.3010.005917
ORF1ab/nsp31774D1774NGatAat11B.1.3110.000275
ORF1ab/nsp31774D1774GgAtgGt11B.1.3370.005587
ORF1ab/nsp31774D1774NGatAat11B.1.3560.001727
ORF1ab/nsp31774D1774delGAT---11B.1.36.170.000494
ORF1ab/nsp31774D1774delGAT---11B.1.36.180.00042
ORF1ab/nsp31774D1774GgAtgGt11B.1.3670.000792
ORF1ab/nsp31774D1774DgaTgaC11B.1.3750.00082
ORF1ab/nsp31774D1774EgaTgaG11B.1.3780.006849
ORF1ab/nsp31774D1774delGAT---11B.1.4090.000781
ORF1ab/nsp31774D1774GgAtgGt11B.1.4230.010204
ORF1ab/nsp31774D1774GgAtgGt11B.1.4270.00005
ORF1ab/nsp31774D1774GgAtgGt11B.1.438.10.000107
ORF1ab/nsp31774D1774DgaTgaC11B.1.4430.004673
ORF1ab/nsp31774D1774GgAtgGt11B.1.5210.004975
ORF1ab/nsp31774D1774DgaTgaC11B.1.5240.001406
ORF1ab/nsp31774D1774DgaTgaC11B.1.5260.000024
ORF1ab/nsp31774D1774GgAtgGt11B.1.5610.000397
ORF1ab/nsp31774D1774GgAtgGt11B.1.5680.001111
ORF1ab/nsp31774D1774DgaTgaC11B.1.5880.00091
ORF1ab/nsp31774D1774DgaTgaC11B.1.5900.004545
ORF1ab/nsp31774D1774AgAtgCt11B.1.6090.000479
ORF1ab/nsp31774D1774delGAT---11B.1.617.20.000004
ORF1ab/nsp31774D1774HGatCat11B.1.617.20.000004
ORF1ab/nsp31774D1774YGatTat11B.1.6210.000089
ORF1ab/nsp31774D1774DgaTgaC11B.1.6230.000536
ORF1ab/nsp31774D1774DgaTgaC11B.1.6270.00202
ORF1ab/nsp31774D1774GgAtgGt11B.1.6370.000073
ORF1ab/nsp31774D1774delGAT---11B.1.6380.052632
ORF1ab/nsp31774D1774DgaTgaC11B.6.60.000889
ORF1ab/nsp31774D1774VgAtgTt11C.350.000774
ORF1ab/nsp31774D1774delGAT---11C.370.000116
ORF1ab/nsp31774D1774delGAT---11P.10.000016
ORF1ab/nsp31774D1774GgAtgGt11P.10.000016
ORF1ab/nsp31774D1774DgaTgaC11P.1.10.000318
ORF1ab/nsp31774D1774AgAtgCt11P.1.120.000484
ORF1ab/nsp31774D1774delGAT---11P.1.150.000232
ORF1ab/nsp31774D1774GgAtgGt11P.1.170.000162
ORF1ab/nsp31774D1774delGAT---11Q.10.000126
ORF1ab/nsp31774D1774DgaTgaC11Q.10.000126
ORF1ab/nsp31774D1774AgAtgCt11Q.10.000126
ORF1ab/nsp31774D1774delGAT---11Q.20.000613
ORF1ab/nsp31774D1774delGAT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.