CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1770

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31770V1770FV2588FnonsynGttTtt3528352818027-8029
ORF1ab/nsp31770V1770IV2588InonsynGttAtt1541530.9935068027-8029
ORF1ab/nsp31770V1770IV2588InonsynGtTAtA15410.006493518027-8029
ORF1ab/nsp31770V1770delV2588deldelGTT---12312318027-8029
ORF1ab/nsp31770V1770VV2588VsyngtTgtC83780.9397598027-8029
ORF1ab/nsp31770V1770VV2588VsyngtTgtA8340.04819288027-8029
ORF1ab/nsp31770V1770VV2588VsyngtTgtG8310.01204828027-8029
ORF1ab/nsp31770V1770AV2588AnonsyngTtgCt434318027-8029
ORF1ab/nsp31770V1770LV2588LnonsynGttCtt760.8571438027-8029
ORF1ab/nsp31770V1770LV2588LnonsynGtTTtA710.1428578027-8029
ORF1ab/nsp31770V1770YV2588YnonsynGTtTAt1118027-8029
ORF1ab/nsp31770V1770KV2588KnonsynGTTAAA1118027-8029
ORF1ab/nsp31770V1770NV2588NnonsynGTtAAt1118027-8029
ORF1ab/nsp31770V1770XV2588XnonsynGTTTAA1118027-8029
ORF1ab/nsp31770V1770HV2588HnonsynGTtCAt1118027-8029
ORF1ab/nsp31770V1770DV2588DnonsyngTtgAt1118027-8029
ORF1ab/nsp31770V1770GV2588GnonsyngTtgGt1118027-8029
ORF1ab/nsp31770V1770del1V2588del1delgTTg-C1118027-8029
ORF1ab/nsp31770V1770EV2588EnonsyngTTgAG1118027-8029
ORF1ab/nsp31770V1770TV2588TnonsynGTtACt1118027-8029

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31770V1770FGttTtt35283528All0.000675
ORF1ab/nsp31770V1770FGttTtt23762376B.1.36.180.998319
ORF1ab/nsp31770V1770FGttTtt230230B.1.1.70.000206
ORF1ab/nsp31770V1770FGttTtt209209P.70.912664
ORF1ab/nsp31770V1770FGttTtt177177AY.7.20.098993
ORF1ab/nsp31770V1770FGttTtt164164AY.40.000255
ORF1ab/nsp31770V1770IGttAtt153154All0.000029
ORF1ab/nsp31770V1770IGtTAtA1154All0
ORF1ab/nsp31770V1770delGTT---123123All0.000024
ORF1ab/nsp31770V1770FGttTtt116116AY.30.001154
ORF1ab/nsp31770V1770VgtTgtC7883All0.000015
ORF1ab/nsp31770V1770VgtTgtA483All0.000001
ORF1ab/nsp31770V1770VgtTgtG183All0
ORF1ab/nsp31770V1770delGTT---4949B.1.1.70.000044
ORF1ab/nsp31770V1770AgTtgCt4343All0.000008
ORF1ab/nsp31770V1770FGttTtt3232B.1.10.000581
ORF1ab/nsp31770V1770VgtTgtC2828B.1.2580.001863
ORF1ab/nsp31770V1770IGttAtt2626AY.39.10.00103
ORF1ab/nsp31770V1770FGttTtt2222B.1.20.000194
ORF1ab/nsp31770V1770FGttTtt2020B.1.617.20.000075
ORF1ab/nsp31770V1770IGttAtt1919AY.440.000116
ORF1ab/nsp31770V1770AgTtgCt1818B.1.1.70.000016
ORF1ab/nsp31770V1770FGttTtt1717B.10.000156
ORF1ab/nsp31770V1770IGttAtt1515AY.1020.000398
ORF1ab/nsp31770V1770VgtTgtC1515AY.40.000023
ORF1ab/nsp31770V1770FGttTtt1414AY.1200.000521
ORF1ab/nsp31770V1770FGttTtt1414AY.430.000062
ORF1ab/nsp31770V1770IGttAtt1213B.1.1.70.000011
ORF1ab/nsp31770V1770IGtTAtA113B.1.1.70.000001
ORF1ab/nsp31770V1770FGttTtt1010AY.1020.000265
ORF1ab/nsp31770V1770IGttAtt1010AY.1090.007396
ORF1ab/nsp31770V1770delGTT---1010AY.40.000016
ORF1ab/nsp31770V1770IGttAtt1010B.1.617.20.000038
ORF1ab/nsp31770V1770FGttTtt1010P.10.000158
ORF1ab/nsp31770V1770VgtTgtC99B.1.1.70.000008
ORF1ab/nsp31770V1770IGttAtt88AY.40.000012
ORF1ab/nsp31770V1770AgTtgCt88AY.90.000541
ORF1ab/nsp31770V1770delGTT---88B.1.1770.000105
ORF1ab/nsp31770V1770FGttTtt88Q.30.00116
ORF1ab/nsp31770V1770LGttCtt67All0.000001
ORF1ab/nsp31770V1770LGtTTtA17All0
ORF1ab/nsp31770V1770FGttTtt77AY.250.000042
ORF1ab/nsp31770V1770delGTT---77B.10.000064
ORF1ab/nsp31770V1770VgtTgtC66AY.430.000027
ORF1ab/nsp31770V1770FGttTtt66B.1.3510.000178
ORF1ab/nsp31770V1770delGTT---55AY.4.50.000537
ORF1ab/nsp31770V1770FGttTtt55AY.46.40.000823
ORF1ab/nsp31770V1770IGttAtt55AY.610.000524
ORF1ab/nsp31770V1770delGTT---55B.1.10.000091
ORF1ab/nsp31770V1770FGttTtt55B.1.1.280.001556
ORF1ab/nsp31770V1770LGttCtt45B.1.1.70.000004
ORF1ab/nsp31770V1770LGtTTtA15B.1.1.70.000001
ORF1ab/nsp31770V1770AgTtgCt44AY.1030.000025
ORF1ab/nsp31770V1770IGttAtt44B.1.1770.000053
ORF1ab/nsp31770V1770FGttTtt44B.1.1770.000053
ORF1ab/nsp31770V1770FGttTtt44B.1.177.210.000306
ORF1ab/nsp31770V1770FGttTtt44C.230.023256
ORF1ab/nsp31770V1770FGttTtt33AY.1030.000019
ORF1ab/nsp31770V1770VgtTgtC23AY.1030.000012
ORF1ab/nsp31770V1770VgtTgtA13AY.1030.000006
ORF1ab/nsp31770V1770IGttAtt33AY.250.000018
ORF1ab/nsp31770V1770IGttAtt33AY.320.001597
ORF1ab/nsp31770V1770IGttAtt33AY.330.0002
ORF1ab/nsp31770V1770FGttTtt33AY.390.000074
ORF1ab/nsp31770V1770IGttAtt33AY.390.000074
ORF1ab/nsp31770V1770AgTtgCt33AY.40.000005
ORF1ab/nsp31770V1770FGttTtt33AY.440.000018
ORF1ab/nsp31770V1770FGttTtt33AY.9.20.00011
ORF1ab/nsp31770V1770FGttTtt33B.1.1.3060.001315
ORF1ab/nsp31770V1770FGttTtt33B.1.1.3760.017857
ORF1ab/nsp31770V1770FGttTtt33B.1.1.4480.006098
ORF1ab/nsp31770V1770IGttAtt33B.1.20.000026
ORF1ab/nsp31770V1770VgtTgtC33B.1.2210.000213
ORF1ab/nsp31770V1770FGttTtt33B.1.4290.000071
ORF1ab/nsp31770V1770FGttTtt33B.1.5260.000071
ORF1ab/nsp31770V1770FGttTtt33B.1.5890.022727
ORF1ab/nsp31770V1770FGttTtt33B.1.6090.001438
ORF1ab/nsp31770V1770FGttTtt33D.20.000225
ORF1ab/nsp31770V1770VgtTgtA12AY.250.000006
ORF1ab/nsp31770V1770VgtTgtC12AY.250.000006
ORF1ab/nsp31770V1770IGttAtt22AY.260.000057
ORF1ab/nsp31770V1770FGttTtt22AY.260.000057
ORF1ab/nsp31770V1770IGttAtt22AY.30.00002
ORF1ab/nsp31770V1770FGttTtt22AY.4.20.000043
ORF1ab/nsp31770V1770IGttAtt22AY.420.00008
ORF1ab/nsp31770V1770delGTT---22AY.430.000009
ORF1ab/nsp31770V1770IGttAtt22AY.750.000112
ORF1ab/nsp31770V1770delGTT---22B.1.1.3150.016949
ORF1ab/nsp31770V1770FGttTtt22B.1.1.3260.003521
ORF1ab/nsp31770V1770delGTT---22B.1.1.460.008734
ORF1ab/nsp31770V1770VgtTgtC22B.1.1.5190.000079
ORF1ab/nsp31770V1770IGttAtt22B.1.1.5280.009615
ORF1ab/nsp31770V1770IGttAtt22B.1.258.140.001961
ORF1ab/nsp31770V1770FGttTtt22B.1.2600.006689
ORF1ab/nsp31770V1770FGttTtt22B.1.360.000292
ORF1ab/nsp31770V1770AgTtgCt22B.1.4030.006536
ORF1ab/nsp31770V1770VgtTgtC22B.1.4290.000047
ORF1ab/nsp31770V1770IGttAtt22B.1.5260.000047
ORF1ab/nsp31770V1770FGttTtt22B.1.5970.009259
ORF1ab/nsp31770V1770AgTtgCt22B.1.617.20.000008
ORF1ab/nsp31770V1770VgtTgtC12C.370.000116
ORF1ab/nsp31770V1770VgtTgtA12C.370.000116
ORF1ab/nsp31770V1770XGTTTAA11All0
ORF1ab/nsp31770V1770KGTTAAA11All0
ORF1ab/nsp31770V1770EgTTgAG11All0
ORF1ab/nsp31770V1770del1gTTg-C11All0
ORF1ab/nsp31770V1770GgTtgGt11All0
ORF1ab/nsp31770V1770DgTtgAt11All0
ORF1ab/nsp31770V1770HGTtCAt11All0
ORF1ab/nsp31770V1770TGTtACt11All0
ORF1ab/nsp31770V1770NGTtAAt11All0
ORF1ab/nsp31770V1770YGTtTAt11All0
ORF1ab/nsp31770V1770FGttTtt11AY.1000.000046
ORF1ab/nsp31770V1770IGttAtt11AY.1030.000006
ORF1ab/nsp31770V1770IGttAtt11AY.1050.000643
ORF1ab/nsp31770V1770FGttTtt11AY.1060.000335
ORF1ab/nsp31770V1770FGttTtt11AY.1100.000113
ORF1ab/nsp31770V1770VgtTgtC11AY.1100.000113
ORF1ab/nsp31770V1770delGTT---11AY.1110.000183
ORF1ab/nsp31770V1770FGttTtt11AY.1130.000142
ORF1ab/nsp31770V1770VgtTgtC11AY.1170.000085
ORF1ab/nsp31770V1770delGTT---11AY.1190.000035
ORF1ab/nsp31770V1770FGttTtt11AY.120.20.001285
ORF1ab/nsp31770V1770IGttAtt11AY.230.00007
ORF1ab/nsp31770V1770AgTtgCt11AY.250.000006
ORF1ab/nsp31770V1770FGttTtt11AY.290.000016
ORF1ab/nsp31770V1770VgtTgtC11AY.30.00001
ORF1ab/nsp31770V1770delGTT---11AY.330.000067
ORF1ab/nsp31770V1770FGttTtt11AY.330.000067
ORF1ab/nsp31770V1770FGttTtt11AY.39.10.00004
ORF1ab/nsp31770V1770VgtTgtC11AY.450.000122
ORF1ab/nsp31770V1770delGTT---11AY.46.20.000635
ORF1ab/nsp31770V1770delGTT---11AY.50.000021
ORF1ab/nsp31770V1770AgTtgCt11AY.50.000021
ORF1ab/nsp31770V1770FGttTtt11AY.5.30.000337
ORF1ab/nsp31770V1770IGttAtt11AY.500.000799
ORF1ab/nsp31770V1770AgTtgCt11AY.530.000288
ORF1ab/nsp31770V1770VgtTgtG11AY.590.00053
ORF1ab/nsp31770V1770FGttTtt11AY.610.000105
ORF1ab/nsp31770V1770IGttAtt11AY.70.000196
ORF1ab/nsp31770V1770FGttTtt11AY.710.000475
ORF1ab/nsp31770V1770delGTT---11AY.720.001361
ORF1ab/nsp31770V1770delGTT---11AY.750.000056
ORF1ab/nsp31770V1770del1gTTg-C11AY.790.001211
ORF1ab/nsp31770V1770FGttTtt11AY.870.000833
ORF1ab/nsp31770V1770IGttAtt11AY.890.004902
ORF1ab/nsp31770V1770VgtTgtC11AY.900.000684
ORF1ab/nsp31770V1770delGTT---11AY.99.10.001553
ORF1ab/nsp31770V1770IGttAtt11AZ.10.000867
ORF1ab/nsp31770V1770AgTtgCt11AZ.10.000867
ORF1ab/nsp31770V1770TGTtACt11AZ.10.000867
ORF1ab/nsp31770V1770LGttCtt11B0.000128
ORF1ab/nsp31770V1770AgTtgCt11B.10.000009
ORF1ab/nsp31770V1770EgTTgAG11B.10.000009
ORF1ab/nsp31770V1770LGttCtt11B.10.000009
ORF1ab/nsp31770V1770FGttTtt11B.1.1.10.000327
ORF1ab/nsp31770V1770VgtTgtC11B.1.1.1070.032258
ORF1ab/nsp31770V1770FGttTtt11B.1.1.2220.000204
ORF1ab/nsp31770V1770delGTT---11B.1.1.2360.006897
ORF1ab/nsp31770V1770delGTT---11B.1.1.3060.000438
ORF1ab/nsp31770V1770delGTT---11B.1.1.3110.000358
ORF1ab/nsp31770V1770GgTtgGt11B.1.1.3260.001761
ORF1ab/nsp31770V1770delGTT---11B.1.1.370.000193
ORF1ab/nsp31770V1770FGttTtt11B.1.1.3720.000689
ORF1ab/nsp31770V1770FGttTtt11B.1.1.3980.003226
ORF1ab/nsp31770V1770FGttTtt11B.1.1.5190.00004
ORF1ab/nsp31770V1770NGTtAAt11B.1.1.70.000001
ORF1ab/nsp31770V1770YGTtTAt11B.1.1.70.000001
ORF1ab/nsp31770V1770KGTTAAA11B.1.1.70.000001
ORF1ab/nsp31770V1770XGTTTAA11B.1.1.70.000001
ORF1ab/nsp31770V1770delGTT---11B.1.1.700.000341
ORF1ab/nsp31770V1770delGTT---11B.1.1400.018868
ORF1ab/nsp31770V1770VgtTgtC11B.1.1770.000013
ORF1ab/nsp31770V1770delGTT---11B.1.177.160.000664
ORF1ab/nsp31770V1770delGTT---11B.1.177.180.00116
ORF1ab/nsp31770V1770delGTT---11B.1.177.40.000211
ORF1ab/nsp31770V1770delGTT---11B.1.177.560.000668
ORF1ab/nsp31770V1770delGTT---11B.1.177.60.000977
ORF1ab/nsp31770V1770delGTT---11B.1.177.620.001192
ORF1ab/nsp31770V1770FGttTtt11B.1.177.730.000566
ORF1ab/nsp31770V1770VgtTgtC11B.1.177.770.000726
ORF1ab/nsp31770V1770IGttAtt11B.1.2390.001221
ORF1ab/nsp31770V1770delGTT---11B.1.2420.018868
ORF1ab/nsp31770V1770FGttTtt11B.1.2580.000067
ORF1ab/nsp31770V1770delGTT---11B.1.258.110.000396
ORF1ab/nsp31770V1770IGttAtt11B.1.3110.000275
ORF1ab/nsp31770V1770IGttAtt11B.1.3510.00003
ORF1ab/nsp31770V1770delGTT---11B.1.36.170.000494
ORF1ab/nsp31770V1770delGTT---11B.1.36.180.00042
ORF1ab/nsp31770V1770IGttAtt11B.1.36.180.00042
ORF1ab/nsp31770V1770FGttTtt11B.1.36.380.001642
ORF1ab/nsp31770V1770delGTT---11B.1.4090.000781
ORF1ab/nsp31770V1770AgTtgCt11B.1.4290.000024
ORF1ab/nsp31770V1770FGttTtt11B.1.4990.00105
ORF1ab/nsp31770V1770FGttTtt11B.1.5880.00091
ORF1ab/nsp31770V1770IGttAtt11B.1.5950.000261
ORF1ab/nsp31770V1770FGttTtt11B.1.5960.000087
ORF1ab/nsp31770V1770delGTT---11B.1.617.20.000004
ORF1ab/nsp31770V1770VgtTgtC11B.1.617.20.000004
ORF1ab/nsp31770V1770IGttAtt11B.1.621.10.000506
ORF1ab/nsp31770V1770delGTT---11B.1.6380.052632
ORF1ab/nsp31770V1770VgtTgtA11B.400.000364
ORF1ab/nsp31770V1770FGttTtt11B.6.60.000889
ORF1ab/nsp31770V1770HGTtCAt11C.350.000774
ORF1ab/nsp31770V1770delGTT---11C.370.000116
ORF1ab/nsp31770V1770DgTtgAt11D.20.000075
ORF1ab/nsp31770V1770IGttAtt11P.10.000016
ORF1ab/nsp31770V1770delGTT---11P.10.000016
ORF1ab/nsp31770V1770FGttTtt11P.1.140.000048
ORF1ab/nsp31770V1770delGTT---11P.1.150.000232
ORF1ab/nsp31770V1770delGTT---11Q.10.000126
ORF1ab/nsp31770V1770IGttAtt11Q.10.000126
ORF1ab/nsp31770V1770delGTT---11Q.20.000613
ORF1ab/nsp31770V1770FGttTtt11Q.80.000165
ORF1ab/nsp31770V1770delGTT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.