CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1770

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31770V1770FV2588FnonsynGttTtt3528352818027-8029
ORF1ab/nsp31770V1770IV2588InonsynGttAtt1541530.9935068027-8029
ORF1ab/nsp31770V1770IV2588InonsynGtTAtA15410.006493518027-8029
ORF1ab/nsp31770V1770delV2588deldelGTT---12312318027-8029
ORF1ab/nsp31770V1770VV2588VsyngtTgtC83780.9397598027-8029
ORF1ab/nsp31770V1770VV2588VsyngtTgtA8340.04819288027-8029
ORF1ab/nsp31770V1770VV2588VsyngtTgtG8310.01204828027-8029
ORF1ab/nsp31770V1770AV2588AnonsyngTtgCt434318027-8029
ORF1ab/nsp31770V1770LV2588LnonsynGttCtt760.8571438027-8029
ORF1ab/nsp31770V1770LV2588LnonsynGtTTtA710.1428578027-8029
ORF1ab/nsp31770V1770YV2588YnonsynGTtTAt1118027-8029
ORF1ab/nsp31770V1770KV2588KnonsynGTTAAA1118027-8029
ORF1ab/nsp31770V1770NV2588NnonsynGTtAAt1118027-8029
ORF1ab/nsp31770V1770XV2588XnonsynGTTTAA1118027-8029
ORF1ab/nsp31770V1770HV2588HnonsynGTtCAt1118027-8029
ORF1ab/nsp31770V1770DV2588DnonsyngTtgAt1118027-8029
ORF1ab/nsp31770V1770GV2588GnonsyngTtgGt1118027-8029
ORF1ab/nsp31770V1770del1V2588del1delgTTg-C1118027-8029
ORF1ab/nsp31770V1770EV2588EnonsyngTTgAG1118027-8029
ORF1ab/nsp31770V1770TV2588TnonsynGTtACt1118027-8029

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31770V1770FGttTtt35283528All0.000675
ORF1ab/nsp31770V1770FGttTtt23762376B.1.36.180.998319
ORF1ab/nsp31770V1770FGttTtt230230B.1.1.70.000206
ORF1ab/nsp31770V1770FGttTtt209209P.70.912664
ORF1ab/nsp31770V1770FGttTtt177177AY.7.20.098993
ORF1ab/nsp31770V1770FGttTtt164164AY.40.000255
ORF1ab/nsp31770V1770IGttAtt153154All0.000029
ORF1ab/nsp31770V1770IGtTAtA1154All0
ORF1ab/nsp31770V1770delGTT---123123All0.000024
ORF1ab/nsp31770V1770FGttTtt116116AY.30.001154
ORF1ab/nsp31770V1770VgtTgtC7883All0.000015
ORF1ab/nsp31770V1770VgtTgtA483All0.000001
ORF1ab/nsp31770V1770VgtTgtG183All0
ORF1ab/nsp31770V1770delGTT---4949B.1.1.70.000044
ORF1ab/nsp31770V1770AgTtgCt4343All0.000008
ORF1ab/nsp31770V1770FGttTtt3232B.1.10.000581
ORF1ab/nsp31770V1770VgtTgtC2828B.1.2580.001863
ORF1ab/nsp31770V1770IGttAtt2626AY.39.10.00103
ORF1ab/nsp31770V1770FGttTtt2222B.1.20.000194
ORF1ab/nsp31770V1770FGttTtt2020B.1.617.20.000075
ORF1ab/nsp31770V1770IGttAtt1919AY.440.000116
ORF1ab/nsp31770V1770AgTtgCt1818B.1.1.70.000016
ORF1ab/nsp31770V1770FGttTtt1717B.10.000156
ORF1ab/nsp31770V1770IGttAtt1515AY.1020.000398
ORF1ab/nsp31770V1770VgtTgtC1515AY.40.000023
ORF1ab/nsp31770V1770FGttTtt1414AY.1200.000521
ORF1ab/nsp31770V1770FGttTtt1414AY.430.000062
ORF1ab/nsp31770V1770IGttAtt1213B.1.1.70.000011
ORF1ab/nsp31770V1770IGtTAtA113B.1.1.70.000001
ORF1ab/nsp31770V1770FGttTtt1010AY.1020.000265
ORF1ab/nsp31770V1770IGttAtt1010AY.1090.007396
ORF1ab/nsp31770V1770delGTT---1010AY.40.000016
ORF1ab/nsp31770V1770IGttAtt1010B.1.617.20.000038
ORF1ab/nsp31770V1770FGttTtt1010P.10.000158
ORF1ab/nsp31770V1770VgtTgtC99B.1.1.70.000008
ORF1ab/nsp31770V1770IGttAtt88AY.40.000012
ORF1ab/nsp31770V1770AgTtgCt88AY.90.000541
ORF1ab/nsp31770V1770delGTT---88B.1.1770.000105
ORF1ab/nsp31770V1770FGttTtt88Q.30.00116
ORF1ab/nsp31770V1770LGttCtt67All0.000001
ORF1ab/nsp31770V1770LGtTTtA17All0
ORF1ab/nsp31770V1770FGttTtt77AY.250.000042
ORF1ab/nsp31770V1770delGTT---77B.10.000064
ORF1ab/nsp31770V1770VgtTgtC66AY.430.000027
ORF1ab/nsp31770V1770FGttTtt66B.1.3510.000178
ORF1ab/nsp31770V1770delGTT---55AY.4.50.000537
ORF1ab/nsp31770V1770FGttTtt55AY.46.40.000823
ORF1ab/nsp31770V1770IGttAtt55AY.610.000524
ORF1ab/nsp31770V1770delGTT---55B.1.10.000091
ORF1ab/nsp31770V1770FGttTtt55B.1.1.280.001556
ORF1ab/nsp31770V1770LGttCtt45B.1.1.70.000004
ORF1ab/nsp31770V1770LGtTTtA15B.1.1.70.000001
ORF1ab/nsp31770V1770AgTtgCt44AY.1030.000025
ORF1ab/nsp31770V1770IGttAtt44B.1.1770.000053
ORF1ab/nsp31770V1770FGttTtt44B.1.1770.000053
ORF1ab/nsp31770V1770FGttTtt44B.1.177.210.000306
ORF1ab/nsp31770V1770FGttTtt44C.230.023256
ORF1ab/nsp31770V1770FGttTtt33AY.1030.000019
ORF1ab/nsp31770V1770VgtTgtC23AY.1030.000012
ORF1ab/nsp31770V1770VgtTgtA13AY.1030.000006
ORF1ab/nsp31770V1770IGttAtt33AY.250.000018
ORF1ab/nsp31770V1770IGttAtt33AY.320.001597
ORF1ab/nsp31770V1770IGttAtt33AY.330.0002
ORF1ab/nsp31770V1770FGttTtt33AY.390.000074
ORF1ab/nsp31770V1770IGttAtt33AY.390.000074
ORF1ab/nsp31770V1770AgTtgCt33AY.40.000005
ORF1ab/nsp31770V1770FGttTtt33AY.440.000018
ORF1ab/nsp31770V1770FGttTtt33AY.9.20.00011
ORF1ab/nsp31770V1770FGttTtt33B.1.1.3060.001315
ORF1ab/nsp31770V1770FGttTtt33B.1.1.3760.017857
ORF1ab/nsp31770V1770FGttTtt33B.1.1.4480.006098
ORF1ab/nsp31770V1770IGttAtt33B.1.20.000026
ORF1ab/nsp31770V1770VgtTgtC33B.1.2210.000213
ORF1ab/nsp31770V1770FGttTtt33B.1.4290.000071
ORF1ab/nsp31770V1770FGttTtt33B.1.5260.000071
ORF1ab/nsp31770V1770FGttTtt33B.1.5890.022727
ORF1ab/nsp31770V1770FGttTtt33B.1.6090.001438
ORF1ab/nsp31770V1770FGttTtt33D.20.000225
ORF1ab/nsp31770V1770VgtTgtA12AY.250.000006
ORF1ab/nsp31770V1770VgtTgtC12AY.250.000006
ORF1ab/nsp31770V1770IGttAtt22AY.260.000057
ORF1ab/nsp31770V1770FGttTtt22AY.260.000057
ORF1ab/nsp31770V1770IGttAtt22AY.30.00002
ORF1ab/nsp31770V1770FGttTtt22AY.4.20.000043
ORF1ab/nsp31770V1770IGttAtt22AY.420.00008
ORF1ab/nsp31770V1770delGTT---22AY.430.000009
ORF1ab/nsp31770V1770IGttAtt22AY.750.000112
ORF1ab/nsp31770V1770delGTT---22B.1.1.3150.016949
ORF1ab/nsp31770V1770FGttTtt22B.1.1.3260.003521
ORF1ab/nsp31770V1770delGTT---22B.1.1.460.008734
ORF1ab/nsp31770V1770VgtTgtC22B.1.1.5190.000079
ORF1ab/nsp31770V1770IGttAtt22B.1.1.5280.009615
ORF1ab/nsp31770V1770IGttAtt22B.1.258.140.001961
ORF1ab/nsp31770V1770FGttTtt22B.1.2600.006689
ORF1ab/nsp31770V1770FGttTtt22B.1.360.000292
ORF1ab/nsp31770V1770AgTtgCt22B.1.4030.006536
ORF1ab/nsp31770V1770VgtTgtC22B.1.4290.000047
ORF1ab/nsp31770V1770IGttAtt22B.1.5260.000047
ORF1ab/nsp31770V1770FGttTtt22B.1.5970.009259
ORF1ab/nsp31770V1770AgTtgCt22B.1.617.20.000008
ORF1ab/nsp31770V1770VgtTgtC12C.370.000116
ORF1ab/nsp31770V1770VgtTgtA12C.370.000116
ORF1ab/nsp31770V1770XGTTTAA11All0
ORF1ab/nsp31770V1770KGTTAAA11All0
ORF1ab/nsp31770V1770EgTTgAG11All0
ORF1ab/nsp31770V1770del1gTTg-C11All0
ORF1ab/nsp31770V1770GgTtgGt11All0
ORF1ab/nsp31770V1770DgTtgAt11All0
ORF1ab/nsp31770V1770HGTtCAt11All0
ORF1ab/nsp31770V1770TGTtACt11All0
ORF1ab/nsp31770V1770NGTtAAt11All0
ORF1ab/nsp31770V1770YGTtTAt11All0
ORF1ab/nsp31770V1770FGttTtt11AY.1000.000046
ORF1ab/nsp31770V1770IGttAtt11AY.1030.000006
ORF1ab/nsp31770V1770IGttAtt11AY.1050.000643
ORF1ab/nsp31770V1770FGttTtt11AY.1060.000335
ORF1ab/nsp31770V1770FGttTtt11AY.1100.000113
ORF1ab/nsp31770V1770VgtTgtC11AY.1100.000113
ORF1ab/nsp31770V1770delGTT---11AY.1110.000183
ORF1ab/nsp31770V1770FGttTtt11AY.1130.000142
ORF1ab/nsp31770V1770VgtTgtC11AY.1170.000085
ORF1ab/nsp31770V1770delGTT---11AY.1190.000035
ORF1ab/nsp31770V1770FGttTtt11AY.120.20.001285
ORF1ab/nsp31770V1770IGttAtt11AY.230.00007
ORF1ab/nsp31770V1770AgTtgCt11AY.250.000006
ORF1ab/nsp31770V1770FGttTtt11AY.290.000016
ORF1ab/nsp31770V1770VgtTgtC11AY.30.00001
ORF1ab/nsp31770V1770delGTT---11AY.330.000067
ORF1ab/nsp31770V1770FGttTtt11AY.330.000067
ORF1ab/nsp31770V1770FGttTtt11AY.39.10.00004
ORF1ab/nsp31770V1770VgtTgtC11AY.450.000122
ORF1ab/nsp31770V1770delGTT---11AY.46.20.000635
ORF1ab/nsp31770V1770delGTT---11AY.50.000021
ORF1ab/nsp31770V1770AgTtgCt11AY.50.000021
ORF1ab/nsp31770V1770FGttTtt11AY.5.30.000337
ORF1ab/nsp31770V1770IGttAtt11AY.500.000799
ORF1ab/nsp31770V1770AgTtgCt11AY.530.000288
ORF1ab/nsp31770V1770VgtTgtG11AY.590.00053
ORF1ab/nsp31770V1770FGttTtt11AY.610.000105
ORF1ab/nsp31770V1770IGttAtt11AY.70.000196
ORF1ab/nsp31770V1770FGttTtt11AY.710.000475
ORF1ab/nsp31770V1770delGTT---11AY.720.001361
ORF1ab/nsp31770V1770delGTT---11AY.750.000056
ORF1ab/nsp31770V1770del1gTTg-C11AY.790.001211
ORF1ab/nsp31770V1770FGttTtt11AY.870.000833
ORF1ab/nsp31770V1770IGttAtt11AY.890.004902
ORF1ab/nsp31770V1770VgtTgtC11AY.900.000684
ORF1ab/nsp31770V1770delGTT---11AY.99.10.001553
ORF1ab/nsp31770V1770IGttAtt11AZ.10.000867
ORF1ab/nsp31770V1770AgTtgCt11AZ.10.000867
ORF1ab/nsp31770V1770TGTtACt11AZ.10.000867
ORF1ab/nsp31770V1770LGttCtt11B0.000128
ORF1ab/nsp31770V1770AgTtgCt11B.10.000009
ORF1ab/nsp31770V1770EgTTgAG11B.10.000009
ORF1ab/nsp31770V1770LGttCtt11B.10.000009
ORF1ab/nsp31770V1770FGttTtt11B.1.1.10.000327
ORF1ab/nsp31770V1770VgtTgtC11B.1.1.1070.032258
ORF1ab/nsp31770V1770FGttTtt11B.1.1.2220.000204
ORF1ab/nsp31770V1770delGTT---11B.1.1.2360.006897
ORF1ab/nsp31770V1770delGTT---11B.1.1.3060.000438
ORF1ab/nsp31770V1770delGTT---11B.1.1.3110.000358
ORF1ab/nsp31770V1770GgTtgGt11B.1.1.3260.001761
ORF1ab/nsp31770V1770delGTT---11B.1.1.370.000193
ORF1ab/nsp31770V1770FGttTtt11B.1.1.3720.000689
ORF1ab/nsp31770V1770FGttTtt11B.1.1.3980.003226
ORF1ab/nsp31770V1770FGttTtt11B.1.1.5190.00004
ORF1ab/nsp31770V1770NGTtAAt11B.1.1.70.000001
ORF1ab/nsp31770V1770YGTtTAt11B.1.1.70.000001
ORF1ab/nsp31770V1770KGTTAAA11B.1.1.70.000001
ORF1ab/nsp31770V1770XGTTTAA11B.1.1.70.000001
ORF1ab/nsp31770V1770delGTT---11B.1.1.700.000341
ORF1ab/nsp31770V1770delGTT---11B.1.1400.018868
ORF1ab/nsp31770V1770VgtTgtC11B.1.1770.000013
ORF1ab/nsp31770V1770delGTT---11B.1.177.160.000664
ORF1ab/nsp31770V1770delGTT---11B.1.177.180.00116
ORF1ab/nsp31770V1770delGTT---11B.1.177.40.000211
ORF1ab/nsp31770V1770delGTT---11B.1.177.560.000668
ORF1ab/nsp31770V1770delGTT---11B.1.177.60.000977
ORF1ab/nsp31770V1770delGTT---11B.1.177.620.001192
ORF1ab/nsp31770V1770FGttTtt11B.1.177.730.000566
ORF1ab/nsp31770V1770VgtTgtC11B.1.177.770.000726
ORF1ab/nsp31770V1770IGttAtt11B.1.2390.001221
ORF1ab/nsp31770V1770delGTT---11B.1.2420.018868
ORF1ab/nsp31770V1770FGttTtt11B.1.2580.000067
ORF1ab/nsp31770V1770delGTT---11B.1.258.110.000396
ORF1ab/nsp31770V1770IGttAtt11B.1.3110.000275
ORF1ab/nsp31770V1770IGttAtt11B.1.3510.00003
ORF1ab/nsp31770V1770delGTT---11B.1.36.170.000494
ORF1ab/nsp31770V1770delGTT---11B.1.36.180.00042
ORF1ab/nsp31770V1770IGttAtt11B.1.36.180.00042
ORF1ab/nsp31770V1770FGttTtt11B.1.36.380.001642
ORF1ab/nsp31770V1770delGTT---11B.1.4090.000781
ORF1ab/nsp31770V1770AgTtgCt11B.1.4290.000024
ORF1ab/nsp31770V1770FGttTtt11B.1.4990.00105
ORF1ab/nsp31770V1770FGttTtt11B.1.5880.00091
ORF1ab/nsp31770V1770IGttAtt11B.1.5950.000261
ORF1ab/nsp31770V1770FGttTtt11B.1.5960.000087
ORF1ab/nsp31770V1770delGTT---11B.1.617.20.000004
ORF1ab/nsp31770V1770VgtTgtC11B.1.617.20.000004
ORF1ab/nsp31770V1770IGttAtt11B.1.621.10.000506
ORF1ab/nsp31770V1770delGTT---11B.1.6380.052632
ORF1ab/nsp31770V1770VgtTgtA11B.400.000364
ORF1ab/nsp31770V1770FGttTtt11B.6.60.000889
ORF1ab/nsp31770V1770HGTtCAt11C.350.000774
ORF1ab/nsp31770V1770delGTT---11C.370.000116
ORF1ab/nsp31770V1770DgTtgAt11D.20.000075
ORF1ab/nsp31770V1770IGttAtt11P.10.000016
ORF1ab/nsp31770V1770delGTT---11P.10.000016
ORF1ab/nsp31770V1770FGttTtt11P.1.140.000048
ORF1ab/nsp31770V1770delGTT---11P.1.150.000232
ORF1ab/nsp31770V1770delGTT---11Q.10.000126
ORF1ab/nsp31770V1770IGttAtt11Q.10.000126
ORF1ab/nsp31770V1770delGTT---11Q.20.000613
ORF1ab/nsp31770V1770FGttTtt11Q.80.000165
ORF1ab/nsp31770V1770delGTT---11U.30.003861