CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1754

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31754L1754LL2572LsynctActG197914470.7311777979-7981
ORF1ab/nsp31754L1754LL2572LsynCtaTta19795160.2607387979-7981
ORF1ab/nsp31754L1754LL2572LsynctActT1979130.006568977979-7981
ORF1ab/nsp31754L1754LL2572LsynctActC197930.001515927979-7981
ORF1ab/nsp31754L1754IL2572InonsynCtaAta29329317979-7981
ORF1ab/nsp31754L1754delL2572deldelCTA---959517979-7981
ORF1ab/nsp31754L1754PL2572PnonsyncTacCa650.8333337979-7981
ORF1ab/nsp31754L1754PL2572PnonsyncTAcCT610.1666677979-7981
ORF1ab/nsp31754L1754del2L2572del2delCTa--a210.57979-7981
ORF1ab/nsp31754L1754del2L2572del2delcTAc--210.57979-7981
ORF1ab/nsp31754L1754QL2572QnonsyncTacAa1117979-7981
ORF1ab/nsp31754L1754RL2572RnonsyncTacGa1117979-7981
ORF1ab/nsp31754L1754del1L2572del1delcTAcC-1117979-7981

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31754L1754LctActG14471979All0.000277
ORF1ab/nsp31754L1754LCtaTta5161979All0.000099
ORF1ab/nsp31754L1754LctActT131979All0.000002
ORF1ab/nsp31754L1754LctActC31979All0.000001
ORF1ab/nsp31754L1754LctActG473473Q.70.525556
ORF1ab/nsp31754L1754ICtaAta293293All0.000056
ORF1ab/nsp31754L1754LctActG203206AY.390.005016
ORF1ab/nsp31754L1754LCtaTta3206AY.390.000074
ORF1ab/nsp31754L1754ICtaAta161161B.1.1.70.000144
ORF1ab/nsp31754L1754LctActG83127AY.40.000129
ORF1ab/nsp31754L1754LCtaTta44127AY.40.000068
ORF1ab/nsp31754L1754LCtaTta58126B.1.1.70.000052
ORF1ab/nsp31754L1754LctActG57126B.1.1.70.000051
ORF1ab/nsp31754L1754LctActT11126B.1.1.70.00001
ORF1ab/nsp31754L1754delCTA---9595All0.000018
ORF1ab/nsp31754L1754LCtaTta4674AY.250.000277
ORF1ab/nsp31754L1754LctActG2874AY.250.000168
ORF1ab/nsp31754L1754LctActG3970P.10.000614
ORF1ab/nsp31754L1754LCtaTta3170P.10.000488
ORF1ab/nsp31754L1754LctActG5264B.1.2430.003618
ORF1ab/nsp31754L1754LCtaTta1264B.1.2430.000835
ORF1ab/nsp31754L1754LctActG5757B.1.438.10.006114
ORF1ab/nsp31754L1754LCtaTta3156B.10.000284
ORF1ab/nsp31754L1754LctActG2556B.10.000229
ORF1ab/nsp31754L1754LctActG5151P.1.60.099222
ORF1ab/nsp31754L1754delCTA---4343B.1.1.70.000038
ORF1ab/nsp31754L1754LctActG4243B.1.177.150.026498
ORF1ab/nsp31754L1754LCtaTta143B.1.177.150.000631
ORF1ab/nsp31754L1754LCtaTta2341B.1.617.20.000087
ORF1ab/nsp31754L1754LctActG1841B.1.617.20.000068
ORF1ab/nsp31754L1754LCtaTta2740B.1.20.000238
ORF1ab/nsp31754L1754LctActG1340B.1.20.000114
ORF1ab/nsp31754L1754LCtaTta3539B.1.5260.000823
ORF1ab/nsp31754L1754LctActG439B.1.5260.000094
ORF1ab/nsp31754L1754LCtaTta1831AY.1030.000112
ORF1ab/nsp31754L1754LctActG1331AY.1030.000081
ORF1ab/nsp31754L1754LctActG2627AY.420.001046
ORF1ab/nsp31754L1754LCtaTta127AY.420.00004
ORF1ab/nsp31754L1754ICtaAta2525B.1.20.00022
ORF1ab/nsp31754L1754ICtaAta2323B.1.1.3320.71875
ORF1ab/nsp31754L1754LctActG2121AY.4.20.000455
ORF1ab/nsp31754L1754LctActG1220AY.1020.000318
ORF1ab/nsp31754L1754LCtaTta820AY.1020.000212
ORF1ab/nsp31754L1754LctActG1120AY.430.000049
ORF1ab/nsp31754L1754LCtaTta820AY.430.000035
ORF1ab/nsp31754L1754LctActT120AY.430.000004
ORF1ab/nsp31754L1754LCtaTta1217AY.440.000073
ORF1ab/nsp31754L1754LctActG517AY.440.00003
ORF1ab/nsp31754L1754LCtaTta1016B.1.1770.000132
ORF1ab/nsp31754L1754LctActG616B.1.1770.000079
ORF1ab/nsp31754L1754ICtaAta1616B.1.4270.000808
ORF1ab/nsp31754L1754LCtaTta1515AY.39.10.000594
ORF1ab/nsp31754L1754LctActG1515B.1.4970.004721
ORF1ab/nsp31754L1754LctActG712AY.30.00007
ORF1ab/nsp31754L1754LCtaTta512AY.30.00005
ORF1ab/nsp31754L1754ICtaAta1111AY.40.000017
ORF1ab/nsp31754L1754LCtaTta810AY.260.000226
ORF1ab/nsp31754L1754LctActG210AY.260.000057
ORF1ab/nsp31754L1754LCtaTta510B.1.360.00073
ORF1ab/nsp31754L1754LctActG410B.1.360.000584
ORF1ab/nsp31754L1754LctActC110B.1.360.000146
ORF1ab/nsp31754L1754LCtaTta1010B.1.36.310.017513
ORF1ab/nsp31754L1754LctActG89AY.1000.000368
ORF1ab/nsp31754L1754LCtaTta19AY.1000.000046
ORF1ab/nsp31754L1754ICtaAta99B.1.110.30.006466
ORF1ab/nsp31754L1754LctActG78B.1.10.000127
ORF1ab/nsp31754L1754LCtaTta18B.1.10.000018
ORF1ab/nsp31754L1754delCTA---88B.1.1770.000105
ORF1ab/nsp31754L1754LctActG88B.1.6280.002819
ORF1ab/nsp31754L1754LctActG77AY.1210.000947
ORF1ab/nsp31754L1754LCtaTta47AY.290.000063
ORF1ab/nsp31754L1754LctActG37AY.290.000047
ORF1ab/nsp31754L1754LCtaTta77B.1.1.5190.000278
ORF1ab/nsp31754L1754LctActG77B.1.2210.000497
ORF1ab/nsp31754L1754LctActG77B.1.2580.000466
ORF1ab/nsp31754L1754LctActG47B.1.3510.000119
ORF1ab/nsp31754L1754LCtaTta37B.1.3510.000089
ORF1ab/nsp31754L1754LctActG77B.1.466.10.05036
ORF1ab/nsp31754L1754PcTacCa56All0.000001
ORF1ab/nsp31754L1754PcTAcCT16All0
ORF1ab/nsp31754L1754delCTA---66AY.40.000009
ORF1ab/nsp31754L1754LctActG66B.1.1.2000.044776
ORF1ab/nsp31754L1754LCtaTta46B.1.5250.000453
ORF1ab/nsp31754L1754LctActG26B.1.5250.000226
ORF1ab/nsp31754L1754ICtaAta66B.1.5260.000141
ORF1ab/nsp31754L1754LCtaTta66P.40.022814
ORF1ab/nsp31754L1754delCTA---55AY.4.50.000537
ORF1ab/nsp31754L1754ICtaAta55B.1.1.1960.028571
ORF1ab/nsp31754L1754LCtaTta45B.1.1600.000125
ORF1ab/nsp31754L1754LctActG15B.1.1600.000031
ORF1ab/nsp31754L1754LctActG55B.1.4990.005252
ORF1ab/nsp31754L1754LctActG35B.1.6370.000219
ORF1ab/nsp31754L1754LCtaTta25B.1.6370.000146
ORF1ab/nsp31754L1754LctActG45P.1.140.000191
ORF1ab/nsp31754L1754LctActT15P.1.140.000048
ORF1ab/nsp31754L1754LctActG44AE.80.001956
ORF1ab/nsp31754L1754LctActG44AY.1170.000338
ORF1ab/nsp31754L1754ICtaAta44AY.30.00004
ORF1ab/nsp31754L1754delCTA---44B.10.000037
ORF1ab/nsp31754L1754ICtaAta44B.1.617.20.000015
ORF1ab/nsp31754L1754LctActG24B.1.6210.000177
ORF1ab/nsp31754L1754LCtaTta24B.1.6210.000177
ORF1ab/nsp31754L1754LctActG44B.1.930.003735
ORF1ab/nsp31754L1754LctActG33A.2.5.20.004717
ORF1ab/nsp31754L1754LCtaTta23AY.230.000139
ORF1ab/nsp31754L1754LctActG13AY.230.00007
ORF1ab/nsp31754L1754LctActG23AY.270.000129
ORF1ab/nsp31754L1754LCtaTta13AY.270.000065
ORF1ab/nsp31754L1754LCtaTta33AY.50.000062
ORF1ab/nsp31754L1754LCtaTta33AY.540.000286
ORF1ab/nsp31754L1754LCtaTta33AY.590.001589
ORF1ab/nsp31754L1754LctActG23AY.9.20.000073
ORF1ab/nsp31754L1754LCtaTta13AY.9.20.000037
ORF1ab/nsp31754L1754LctActG33AY.910.002191
ORF1ab/nsp31754L1754LctActG33AY.950.002283
ORF1ab/nsp31754L1754LCtaTta33AY.98.10.000145
ORF1ab/nsp31754L1754LctActG33B.1.1.3180.000905
ORF1ab/nsp31754L1754LctActG33B.1.1.4370.03125
ORF1ab/nsp31754L1754LctActG33B.1.214.20.001799
ORF1ab/nsp31754L1754LCtaTta23B.1.3490.00143
ORF1ab/nsp31754L1754LctActG13B.1.3490.000715
ORF1ab/nsp31754L1754ICtaAta33B.1.360.000438
ORF1ab/nsp31754L1754LctActG33B.1.4290.000071
ORF1ab/nsp31754L1754LctActG33B.1.5750.00091
ORF1ab/nsp31754L1754LctActG33B.1.6020.019608
ORF1ab/nsp31754L1754LCtaTta33B.1.6090.001438
ORF1ab/nsp31754L1754LctActG33P.1.170.000485
ORF1ab/nsp31754L1754LCtaTta33P.30.004785
ORF1ab/nsp31754L1754del2CTa--a12All0
ORF1ab/nsp31754L1754del2cTAc--12All0
ORF1ab/nsp31754L1754LCtaTta22AY.1080.002205
ORF1ab/nsp31754L1754LCtaTta22AY.1100.000225
ORF1ab/nsp31754L1754LctActG22AY.1190.000071
ORF1ab/nsp31754L1754LctActG22AY.120.10.000642
ORF1ab/nsp31754L1754LctActG22AY.160.000759
ORF1ab/nsp31754L1754LctActG12AY.320.000532
ORF1ab/nsp31754L1754LCtaTta12AY.320.000532
ORF1ab/nsp31754L1754LctActG22AY.34.10.00102
ORF1ab/nsp31754L1754LctActG12AY.4.50.000107
ORF1ab/nsp31754L1754LCtaTta12AY.4.50.000107
ORF1ab/nsp31754L1754delCTA---22AY.430.000009
ORF1ab/nsp31754L1754LctActG12AY.450.000122
ORF1ab/nsp31754L1754LCtaTta12AY.450.000122
ORF1ab/nsp31754L1754LctActG22AY.470.000062
ORF1ab/nsp31754L1754LctActG22AY.5.30.000675
ORF1ab/nsp31754L1754LctActG22AY.560.00321
ORF1ab/nsp31754L1754LCtaTta12AY.60.000041
ORF1ab/nsp31754L1754LctActG12AY.60.000041
ORF1ab/nsp31754L1754LCtaTta22AY.99.20.000184
ORF1ab/nsp31754L1754LCtaTta22B0.000256
ORF1ab/nsp31754L1754ICtaAta22B.1.10.000036
ORF1ab/nsp31754L1754LctActG22B.1.1.2690.002706
ORF1ab/nsp31754L1754delCTA---22B.1.177.40.000422
ORF1ab/nsp31754L1754LCtaTta22B.1.351.20.000605
ORF1ab/nsp31754L1754ICtaAta22B.1.5250.000226
ORF1ab/nsp31754L1754delCTA---22B.1.617.20.000008
ORF1ab/nsp31754L1754LctActG22B.30.001661
ORF1ab/nsp31754L1754LCtaTta22C.370.000232
ORF1ab/nsp31754L1754LctActG12D.20.000075
ORF1ab/nsp31754L1754LCtaTta12D.20.000075
ORF1ab/nsp31754L1754LctActG22Q.10.000253
ORF1ab/nsp31754L1754LctActG22R.10.00018
ORF1ab/nsp31754L1754delCTA---11A0.000387
ORF1ab/nsp31754L1754LctActG11A.23.10.000704
ORF1ab/nsp31754L1754QcTacAa11All0
ORF1ab/nsp31754L1754RcTacGa11All0
ORF1ab/nsp31754L1754del1cTAcC-11All0
ORF1ab/nsp31754L1754LctActC11AU.30.00211
ORF1ab/nsp31754L1754LCtaTta11AY.1010.00049
ORF1ab/nsp31754L1754ICtaAta11AY.1030.000006
ORF1ab/nsp31754L1754RcTacGa11AY.1030.000006
ORF1ab/nsp31754L1754LctActG11AY.1060.000335
ORF1ab/nsp31754L1754delCTA---11AY.1110.000183
ORF1ab/nsp31754L1754LctActC11AY.1180.000063
ORF1ab/nsp31754L1754delCTA---11AY.190.00114
ORF1ab/nsp31754L1754ICtaAta11AY.200.000039
ORF1ab/nsp31754L1754ICtaAta11AY.250.000006
ORF1ab/nsp31754L1754ICtaAta11AY.260.000028
ORF1ab/nsp31754L1754LctActG11AY.29.10.000221
ORF1ab/nsp31754L1754LctActG11AY.3.10.000085
ORF1ab/nsp31754L1754LCtaTta11AY.330.000067
ORF1ab/nsp31754L1754delCTA---11AY.330.000067
ORF1ab/nsp31754L1754LctActG11AY.360.000148
ORF1ab/nsp31754L1754del2CTa--a11AY.430.000004
ORF1ab/nsp31754L1754delCTA---11AY.440.000006
ORF1ab/nsp31754L1754del1cTAcC-11AY.440.000006
ORF1ab/nsp31754L1754PcTacCa11AY.440.000006
ORF1ab/nsp31754L1754ICtaAta11AY.450.000122
ORF1ab/nsp31754L1754LCtaTta11AY.460.000104
ORF1ab/nsp31754L1754delCTA---11AY.46.20.000635
ORF1ab/nsp31754L1754ICtaAta11AY.46.50.000198
ORF1ab/nsp31754L1754LctActG11AY.46.50.000198
ORF1ab/nsp31754L1754delCTA---11AY.50.000021
ORF1ab/nsp31754L1754LctActG11AY.5.40.000277
ORF1ab/nsp31754L1754LctActG11AY.520.000814
ORF1ab/nsp31754L1754LCtaTta11AY.530.000288
ORF1ab/nsp31754L1754LctActG11AY.570.000656
ORF1ab/nsp31754L1754delCTA---11AY.60.000041
ORF1ab/nsp31754L1754LCtaTta11AY.620.000436
ORF1ab/nsp31754L1754LctActG11AY.630.000387
ORF1ab/nsp31754L1754ICtaAta11AY.660.00107
ORF1ab/nsp31754L1754ICtaAta11AY.690.000187
ORF1ab/nsp31754L1754LCtaTta11AY.740.000116
ORF1ab/nsp31754L1754delCTA---11AY.750.000056
ORF1ab/nsp31754L1754LCtaTta11AY.750.000056
ORF1ab/nsp31754L1754LCtaTta11AY.820.001357
ORF1ab/nsp31754L1754LctActG11AY.850.000427
ORF1ab/nsp31754L1754LctActG11AY.920.000287
ORF1ab/nsp31754L1754LctActG11AY.930.000273
ORF1ab/nsp31754L1754ICtaAta11AY.950.000761
ORF1ab/nsp31754L1754LCtaTta11AY.960.002075
ORF1ab/nsp31754L1754delCTA---11AY.99.10.001553
ORF1ab/nsp31754L1754ICtaAta11B0.000128
ORF1ab/nsp31754L1754ICtaAta11B.10.000009
ORF1ab/nsp31754L1754delCTA---11B.1.10.000018
ORF1ab/nsp31754L1754QcTacAa11B.1.1.1530.001095
ORF1ab/nsp31754L1754LCtaTta11B.1.1.1760.000439
ORF1ab/nsp31754L1754LctActG11B.1.1.1820.090909
ORF1ab/nsp31754L1754ICtaAta11B.1.1.2140.000055
ORF1ab/nsp31754L1754delCTA---11B.1.1.2360.006897
ORF1ab/nsp31754L1754LctActG11B.1.1.250.000569
ORF1ab/nsp31754L1754LCtaTta11B.1.1.2560.013699
ORF1ab/nsp31754L1754LCtaTta11B.1.1.2730.006757
ORF1ab/nsp31754L1754LctActG11B.1.1.280.000311
ORF1ab/nsp31754L1754LCtaTta11B.1.1.2840.000107
ORF1ab/nsp31754L1754LCtaTta11B.1.1.3070.002532
ORF1ab/nsp31754L1754LctActG11B.1.1.4090.002833
ORF1ab/nsp31754L1754LCtaTta11B.1.1.4340.000349
ORF1ab/nsp31754L1754delCTA---11B.1.1.460.004367
ORF1ab/nsp31754L1754LCtaTta11B.1.1.5230.001563
ORF1ab/nsp31754L1754PcTacCa11B.1.1.70.000001
ORF1ab/nsp31754L1754del2cTAc--11B.1.1.70.000001
ORF1ab/nsp31754L1754ICtaAta11B.1.1280.000635
ORF1ab/nsp31754L1754LCtaTta11B.1.1430.021277
ORF1ab/nsp31754L1754ICtaAta11B.1.1600.000031
ORF1ab/nsp31754L1754LCtaTta11B.1.1660.008475
ORF1ab/nsp31754L1754PcTacCa11B.1.1770.000013
ORF1ab/nsp31754L1754delCTA---11B.1.177.160.000664
ORF1ab/nsp31754L1754delCTA---11B.1.177.170.000821
ORF1ab/nsp31754L1754ICtaAta11B.1.177.210.000076
ORF1ab/nsp31754L1754LctActG11B.1.177.530.002392
ORF1ab/nsp31754L1754delCTA---11B.1.177.540.000606
ORF1ab/nsp31754L1754delCTA---11B.1.177.60.000977
ORF1ab/nsp31754L1754delCTA---11B.1.177.600.000218
ORF1ab/nsp31754L1754delCTA---11B.1.177.630.002703
ORF1ab/nsp31754L1754delCTA---11B.1.177.690.001484
ORF1ab/nsp31754L1754LctActG11B.1.177.810.000189
ORF1ab/nsp31754L1754LCtaTta11B.1.2320.000537
ORF1ab/nsp31754L1754LCtaTta11B.1.2400.000216
ORF1ab/nsp31754L1754LCtaTta11B.1.258.110.000396
ORF1ab/nsp31754L1754delCTA---11B.1.258.110.000396
ORF1ab/nsp31754L1754LctActG11B.1.258.30.001675
ORF1ab/nsp31754L1754ICtaAta11B.1.3510.00003
ORF1ab/nsp31754L1754ICtaAta11B.1.36.160.001425
ORF1ab/nsp31754L1754delCTA---11B.1.36.170.000494
ORF1ab/nsp31754L1754delCTA---11B.1.36.180.00042
ORF1ab/nsp31754L1754LCtaTta11B.1.4080.00369
ORF1ab/nsp31754L1754ICtaAta11B.1.4220.000812
ORF1ab/nsp31754L1754LCtaTta11B.1.4270.00005
ORF1ab/nsp31754L1754PcTacCa11B.1.4290.000024
ORF1ab/nsp31754L1754ICtaAta11B.1.4620.007246
ORF1ab/nsp31754L1754LctActG11B.1.4730.019231
ORF1ab/nsp31754L1754LCtaTta11B.1.5610.000397
ORF1ab/nsp31754L1754LCtaTta11B.1.5820.000491
ORF1ab/nsp31754L1754LCtaTta11B.1.5950.000261
ORF1ab/nsp31754L1754ICtaAta11B.1.617.10.000129
ORF1ab/nsp31754L1754LctActG11B.1.617.10.000129
ORF1ab/nsp31754L1754PcTacCa11B.1.617.20.000004
ORF1ab/nsp31754L1754LCtaTta11B.1.6360.006711
ORF1ab/nsp31754L1754LCtaTta11B.4.70.010101
ORF1ab/nsp31754L1754PcTAcCT11B.530.011765
ORF1ab/nsp31754L1754LctActG11C.230.005814
ORF1ab/nsp31754L1754LCtaTta11C.350.000774
ORF1ab/nsp31754L1754ICtaAta11P.10.000016
ORF1ab/nsp31754L1754LCtaTta11P.1.10.000318
ORF1ab/nsp31754L1754LctActG11P.1.120.000484
ORF1ab/nsp31754L1754ICtaAta11Q.50.016949