CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1745 | Q1745H | Q2563H | nonsyn | caG | caT | 1519 | 1514 | 0.996708 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745H | Q2563H | nonsyn | caG | caC | 1519 | 5 | 0.00329164 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745Q | Q2563Q | syn | caG | caA | 164 | 164 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745del | Q2563del | del | CAG | --- | 93 | 93 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745X | Q2563X | nonsyn | Cag | Tag | 8 | 6 | 0.75 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745X | Q2563X | nonsyn | CaG | TaA | 8 | 2 | 0.25 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745K | Q2563K | nonsyn | Cag | Aag | 6 | 6 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745L | Q2563L | nonsyn | cAg | cTg | 2 | 2 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745S | Q2563S | nonsyn | CAg | TCg | 2 | 1 | 0.5 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745S | Q2563S | nonsyn | CAG | TCA | 2 | 1 | 0.5 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745P | Q2563P | nonsyn | cAg | cCg | 2 | 1 | 0.5 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745P | Q2563P | nonsyn | cAG | cCA | 2 | 1 | 0.5 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745del1 | Q2563del1 | del | caG | ca- | 1 | 1 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745R | Q2563R | nonsyn | cAg | cGg | 1 | 1 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745E | Q2563E | nonsyn | Cag | Gag | 1 | 1 | 1 | 7952-7954 |
ORF1ab/nsp3 | 1745 | Q1745del2 | Q2563del2 | del | CAg | --g | 1 | 1 | 1 | 7952-7954 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1514 | 1519 | All | 0.00029 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caC | 5 | 1519 | All | 0.000001 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 183 | 183 | B.1.1.204 | 0.556231 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 164 | 164 | All | 0.000031 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 148 | 148 | AY.43 | 0.000656 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 139 | 139 | B.1.617.2 | 0.000523 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 134 | 135 | B.1.1.7 | 0.00012 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caC | 1 | 135 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 107 | 107 | B.1.243 | 0.007446 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 100 | 100 | B.1.340 | 0.429185 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 93 | 93 | All | 0.000018 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 70 | 70 | B.1.351 | 0.002081 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 65 | 65 | AY.4 | 0.000101 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 58 | 58 | AY.102 | 0.001538 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 41 | 41 | B.1.1.7 | 0.000037 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 39 | 39 | B.1.2 | 0.000343 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 32 | 32 | P.1 | 0.000504 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 29 | 29 | B.1.221 | 0.00206 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 26 | 26 | B.1.1.214 | 0.001442 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 21 | 21 | B.1.1.370 | 0.265823 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 16 | 16 | B.1.409 | 0.0125 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 15 | 15 | P.1.12 | 0.00726 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 13 | 13 | B.1.1.255 | 0.039394 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 12 | 12 | B.1.195 | 0.060302 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 10 | 11 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caC | 1 | 11 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 9 | 9 | B.1.621.1 | 0.004552 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 1745 | Q1745X | Cag | Tag | 6 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1745 | Q1745X | CaG | TaA | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 8 | 8 | B.1.1.63 | 0.003086 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1745 | Q1745K | Cag | Aag | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1745 | Q1745X | Cag | Tag | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1745 | Q1745P | cAG | cCA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1745 | Q1745P | cAg | cCg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1745 | Q1745X | CaG | TaA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1745 | Q1745S | CAg | TCg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1745 | Q1745S | CAG | TCA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1745 | Q1745L | cAg | cTg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745P | cAG | cCA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745S | CAG | TCA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745P | cAg | cCg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745S | CAg | TCg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1745 | Q1745K | Cag | Aag | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1745 | Q1745X | Cag | Tag | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.569 | 0.028986 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caC | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1745 | Q1745L | cAg | cTg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp3 | 1745 | Q1745del2 | CAg | --g | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745E | Cag | Gag | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745R | cAg | cGg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745del1 | caG | ca- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1745 | Q1745K | Cag | Aag | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1745 | Q1745del2 | CAg | --g | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1745 | Q1745K | Cag | Aag | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1745 | Q1745L | cAg | cTg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1745 | Q1745E | Cag | Gag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1745 | Q1745R | cAg | cGg | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caC | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.1.43 | 0.014925 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1745 | Q1745X | Cag | Tag | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1745 | Q1745X | Cag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1745 | Q1745del1 | caG | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1745 | Q1745X | Cag | Tag | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1745 | Q1745K | Cag | Aag | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caC | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1745 | Q1745X | CaG | TaA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1745 | Q1745K | Cag | Aag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1745 | Q1745Q | caG | caA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1745 | Q1745H | caG | caT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1745 | Q1745del | CAG | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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