CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1742

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31742Y1742YY2560YsyntaCtaT109291092917943-7945
ORF1ab/nsp31742Y1742delY2560deldelTAC---10510517943-7945
ORF1ab/nsp31742Y1742NY2560NnonsynTacAac333317943-7945
ORF1ab/nsp31742Y1742FY2560FnonsyntActTc262617943-7945
ORF1ab/nsp31742Y1742DY2560DnonsynTacGac131317943-7945
ORF1ab/nsp31742Y1742XY2560XnonsyntaCtaA870.8757943-7945
ORF1ab/nsp31742Y1742XY2560XnonsyntaCtaG810.1257943-7945
ORF1ab/nsp31742Y1742CY2560CnonsyntActGc6617943-7945
ORF1ab/nsp31742Y1742HY2560HnonsynTacCac6617943-7945
ORF1ab/nsp31742Y1742del2Y2560del2delTAc--c430.757943-7945
ORF1ab/nsp31742Y1742del1Y2560del1deltaCta-420.57943-7945
ORF1ab/nsp31742Y1742del2Y2560del2deltACt--410.257943-7945
ORF1ab/nsp31742Y1742del1Y2560del1deltACt-T410.257943-7945
ORF1ab/nsp31742Y1742del1Y2560del1delTAC-NN410.257943-7945
ORF1ab/nsp31742Y1742SY2560SnonsyntActCc2217943-7945
ORF1ab/nsp31742Y1742IY2560InonsynTACATT1117943-7945

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31742Y1742YtaCtaT1092910929All0.00209
ORF1ab/nsp31742Y1742YtaCtaT22602260B.1.1.70.002023
ORF1ab/nsp31742Y1742YtaCtaT16011601B.1.177.210.122429
ORF1ab/nsp31742Y1742YtaCtaT950950AY.40.001479
ORF1ab/nsp31742Y1742YtaCtaT821821P.10.012934
ORF1ab/nsp31742Y1742YtaCtaT462462B.1.20.004068
ORF1ab/nsp31742Y1742YtaCtaT371371AY.50.007661
ORF1ab/nsp31742Y1742YtaCtaT368368B.1.5510.474839
ORF1ab/nsp31742Y1742YtaCtaT274274B.1.617.20.001032
ORF1ab/nsp31742Y1742YtaCtaT192192AY.250.001155
ORF1ab/nsp31742Y1742YtaCtaT185185AY.1030.001149
ORF1ab/nsp31742Y1742YtaCtaT169169AY.30.001681
ORF1ab/nsp31742Y1742YtaCtaT144144AY.430.000638
ORF1ab/nsp31742Y1742YtaCtaT142142B.1.1600.004429
ORF1ab/nsp31742Y1742YtaCtaT137137B.10.001255
ORF1ab/nsp31742Y1742YtaCtaT120120B.1.2430.00835
ORF1ab/nsp31742Y1742YtaCtaT118118AY.440.000718
ORF1ab/nsp31742Y1742YtaCtaT118118AY.750.006611
ORF1ab/nsp31742Y1742YtaCtaT107107AY.260.003029
ORF1ab/nsp31742Y1742YtaCtaT106106B.1.2210.007529
ORF1ab/nsp31742Y1742delTAC---105105All0.00002
ORF1ab/nsp31742Y1742YtaCtaT9898P.1.111
ORF1ab/nsp31742Y1742YtaCtaT8787AY.390.00215
ORF1ab/nsp31742Y1742YtaCtaT8282B.1.4290.001929
ORF1ab/nsp31742Y1742YtaCtaT8181B.1.10.001469
ORF1ab/nsp31742Y1742YtaCtaT7676AY.1190.002683
ORF1ab/nsp31742Y1742YtaCtaT7676AY.4.20.001648
ORF1ab/nsp31742Y1742YtaCtaT7171B.1.1770.000935
ORF1ab/nsp31742Y1742YtaCtaT6565AY.1210.008796
ORF1ab/nsp31742Y1742YtaCtaT6464B.1.4270.003232
ORF1ab/nsp31742Y1742YtaCtaT5757Q.10.007201
ORF1ab/nsp31742Y1742YtaCtaT5555AY.420.002213
ORF1ab/nsp31742Y1742YtaCtaT5555B.1.1.3340.901639
ORF1ab/nsp31742Y1742delTAC---4545B.1.1.70.00004
ORF1ab/nsp31742Y1742YtaCtaT4242AY.60.001727
ORF1ab/nsp31742Y1742YtaCtaT3939B.1.177.600.008519
ORF1ab/nsp31742Y1742YtaCtaT3939B.1.3610.050258
ORF1ab/nsp31742Y1742YtaCtaT3939B.1.5260.000917
ORF1ab/nsp31742Y1742NTacAac3333All0.000006
ORF1ab/nsp31742Y1742YtaCtaT3333AY.470.001026
ORF1ab/nsp31742Y1742YtaCtaT3131AY.290.000489
ORF1ab/nsp31742Y1742YtaCtaT2929AY.590.01536
ORF1ab/nsp31742Y1742YtaCtaT2828P.1.140.001338
ORF1ab/nsp31742Y1742YtaCtaT2727B.1.36.80.027
ORF1ab/nsp31742Y1742FtActTc2626All0.000005
ORF1ab/nsp31742Y1742YtaCtaT2525AY.1020.000663
ORF1ab/nsp31742Y1742YtaCtaT2424AY.1200.000892
ORF1ab/nsp31742Y1742YtaCtaT2424Q.80.003958
ORF1ab/nsp31742Y1742YtaCtaT2121AY.230.001465
ORF1ab/nsp31742Y1742YtaCtaT2020A.90.909091
ORF1ab/nsp31742Y1742YtaCtaT2020AY.200.000777
ORF1ab/nsp31742Y1742YtaCtaT2020AY.980.00158
ORF1ab/nsp31742Y1742YtaCtaT1919AY.330.001269
ORF1ab/nsp31742Y1742YtaCtaT1919AY.39.10.000753
ORF1ab/nsp31742Y1742YtaCtaT1818AY.1000.000828
ORF1ab/nsp31742Y1742YtaCtaT1818B.1.1.5190.000715
ORF1ab/nsp31742Y1742YtaCtaT1818B.1.5170.007686
ORF1ab/nsp31742Y1742YtaCtaT1818B.1.5960.001568
ORF1ab/nsp31742Y1742YtaCtaT1717AY.210.032258
ORF1ab/nsp31742Y1742YtaCtaT1717C.370.001973
ORF1ab/nsp31742Y1742YtaCtaT1515B.1.2580.000998
ORF1ab/nsp31742Y1742YtaCtaT1414B.1.177.860.002568
ORF1ab/nsp31742Y1742DTacGac1313All0.000002
ORF1ab/nsp31742Y1742YtaCtaT1212AY.1180.000752
ORF1ab/nsp31742Y1742YtaCtaT1212AY.46.40.001974
ORF1ab/nsp31742Y1742YtaCtaT1212B.1.177.750.012487
ORF1ab/nsp31742Y1742YtaCtaT1212B.1.5860.131868
ORF1ab/nsp31742Y1742YtaCtaT1111B.1.1.250.006254
ORF1ab/nsp31742Y1742YtaCtaT1111B.1.4220.008936
ORF1ab/nsp31742Y1742YtaCtaT1010AY.540.000953
ORF1ab/nsp31742Y1742YtaCtaT1010B.1.1.1150.089286
ORF1ab/nsp31742Y1742YtaCtaT1010B.1.1.2140.000555
ORF1ab/nsp31742Y1742YtaCtaT1010B.1.1.280.003112
ORF1ab/nsp31742Y1742YtaCtaT1010B.1.1.2940.012658
ORF1ab/nsp31742Y1742YtaCtaT1010B.1.6210.000885
ORF1ab/nsp31742Y1742YtaCtaT99AY.1130.001282
ORF1ab/nsp31742Y1742YtaCtaT99AY.1140.00208
ORF1ab/nsp31742Y1742YtaCtaT99AY.140.000792
ORF1ab/nsp31742Y1742YtaCtaT99AY.3.10.000767
ORF1ab/nsp31742Y1742YtaCtaT99AY.4.2.10.001341
ORF1ab/nsp31742Y1742YtaCtaT99AY.46.60.00065
ORF1ab/nsp31742Y1742YtaCtaT99AY.98.10.000436
ORF1ab/nsp31742Y1742YtaCtaT99P.20.00168
ORF1ab/nsp31742Y1742XtaCtaA78All0.000001
ORF1ab/nsp31742Y1742XtaCtaG18All0
ORF1ab/nsp31742Y1742YtaCtaT88AY.39.20.012327
ORF1ab/nsp31742Y1742delTAC---88AY.40.000012
ORF1ab/nsp31742Y1742YtaCtaT88AY.460.000833
ORF1ab/nsp31742Y1742YtaCtaT88AY.610.000838
ORF1ab/nsp31742Y1742YtaCtaT88AY.75.10.001442
ORF1ab/nsp31742Y1742YtaCtaT88AY.780.012327
ORF1ab/nsp31742Y1742YtaCtaT88B.1.1.4340.002788
ORF1ab/nsp31742Y1742YtaCtaT88B.1.3510.000238
ORF1ab/nsp31742Y1742YtaCtaT88B.1.351.20.002421
ORF1ab/nsp31742Y1742YtaCtaT88P.1.170.001294
ORF1ab/nsp31742Y1742YtaCtaT77AY.9.20.000257
ORF1ab/nsp31742Y1742YtaCtaT77B.1.1.2680.104478
ORF1ab/nsp31742Y1742YtaCtaT77B.1.1.5120.2
ORF1ab/nsp31742Y1742YtaCtaT77B.1.177.20.031818
ORF1ab/nsp31742Y1742YtaCtaT77B.1.360.001021
ORF1ab/nsp31742Y1742YtaCtaT77B.1.4700.009831
ORF1ab/nsp31742Y1742YtaCtaT77B.1.4970.002203
ORF1ab/nsp31742Y1742YtaCtaT77B.1.5950.001827
ORF1ab/nsp31742Y1742YtaCtaT77B.1.6370.000512
ORF1ab/nsp31742Y1742YtaCtaT77C.350.005418
ORF1ab/nsp31742Y1742YtaCtaT77P.1.150.001626
ORF1ab/nsp31742Y1742HTacCac66All0.000001
ORF1ab/nsp31742Y1742CtActGc66All0.000001
ORF1ab/nsp31742Y1742YtaCtaT66AY.1060.002009
ORF1ab/nsp31742Y1742YtaCtaT66AY.1160.001721
ORF1ab/nsp31742Y1742YtaCtaT66AY.1170.000507
ORF1ab/nsp31742Y1742YtaCtaT66AY.340.000582
ORF1ab/nsp31742Y1742YtaCtaT66AY.7.20.003356
ORF1ab/nsp31742Y1742YtaCtaT66B.1.1.1530.006572
ORF1ab/nsp31742Y1742FtActTc66B.1.4290.000141
ORF1ab/nsp31742Y1742YtaCtaT66B.1.5750.00182
ORF1ab/nsp31742Y1742YtaCtaT66P.1.120.002904
ORF1ab/nsp31742Y1742YtaCtaT55AY.910.003652
ORF1ab/nsp31742Y1742YtaCtaT55B.1.1.2860.014493
ORF1ab/nsp31742Y1742YtaCtaT55B.1.1.4090.014164
ORF1ab/nsp31742Y1742YtaCtaT55B.1.1.5210.026738
ORF1ab/nsp31742Y1742YtaCtaT55B.1.177.770.003631
ORF1ab/nsp31742Y1742YtaCtaT55B.1.2340.00066
ORF1ab/nsp31742Y1742YtaCtaT55B.1.5250.000566
ORF1ab/nsp31742Y1742YtaCtaT55C.360.004554
ORF1ab/nsp31742Y1742del2TAc--c34All0.000001
ORF1ab/nsp31742Y1742del1taCta-24All0
ORF1ab/nsp31742Y1742del2tACt--14All0
ORF1ab/nsp31742Y1742del1tACt-T14All0
ORF1ab/nsp31742Y1742del1TAC-NN14All0
ORF1ab/nsp31742Y1742YtaCtaT44AY.360.000593
ORF1ab/nsp31742Y1742delTAC---44AY.4.50.00043
ORF1ab/nsp31742Y1742YtaCtaT44AY.450.000487
ORF1ab/nsp31742Y1742YtaCtaT44AY.920.001149
ORF1ab/nsp31742Y1742YtaCtaT44B0.000511
ORF1ab/nsp31742Y1742YtaCtaT44B.1.1.2650.012618
ORF1ab/nsp31742Y1742YtaCtaT44B.1.1.2840.00043
ORF1ab/nsp31742Y1742YtaCtaT44B.1.1.3170.001647
ORF1ab/nsp31742Y1742delTAC---44B.1.1770.000053
ORF1ab/nsp31742Y1742YtaCtaT44B.1.177.40.000844
ORF1ab/nsp31742Y1742YtaCtaT44B.1.177.790.009368
ORF1ab/nsp31742Y1742FtActTc44B.1.20.000035
ORF1ab/nsp31742Y1742FtActTc44B.1.2430.000278
ORF1ab/nsp31742Y1742YtaCtaT44B.1.5820.001963
ORF1ab/nsp31742Y1742YtaCtaT44B.1.6090.001918
ORF1ab/nsp31742Y1742delTAC---44B.1.617.20.000015
ORF1ab/nsp31742Y1742YtaCtaT44B.1.6180.016129
ORF1ab/nsp31742Y1742YtaCtaT44P.1.160.001496
ORF1ab/nsp31742Y1742YtaCtaT33A.20.001985
ORF1ab/nsp31742Y1742YtaCtaT33A.2.50.001497
ORF1ab/nsp31742Y1742YtaCtaT33A.280.007937
ORF1ab/nsp31742Y1742YtaCtaT33AY.1100.000338
ORF1ab/nsp31742Y1742YtaCtaT33AY.160.001139
ORF1ab/nsp31742Y1742YtaCtaT33AY.20.001068
ORF1ab/nsp31742Y1742YtaCtaT33AY.270.000194
ORF1ab/nsp31742Y1742YtaCtaT33AY.29.10.000662
ORF1ab/nsp31742Y1742YtaCtaT33AY.370.000948
ORF1ab/nsp31742Y1742YtaCtaT33AY.380.001498
ORF1ab/nsp31742Y1742YtaCtaT33AY.710.001425
ORF1ab/nsp31742Y1742delTAC---33B.10.000027
ORF1ab/nsp31742Y1742HTacCac33B.10.000027
ORF1ab/nsp31742Y1742NTacAac33B.1.10.000054
ORF1ab/nsp31742Y1742YtaCtaT33B.1.1.1610.010601
ORF1ab/nsp31742Y1742YtaCtaT33B.1.1.1700.003741
ORF1ab/nsp31742Y1742YtaCtaT33B.1.1.4480.006098
ORF1ab/nsp31742Y1742FtActTc33B.1.1.70.000003
ORF1ab/nsp31742Y1742del2TAc--c23B.1.1.70.000002
ORF1ab/nsp31742Y1742del2tACt--13B.1.1.70.000001
ORF1ab/nsp31742Y1742YtaCtaT33B.1.1.700.001023
ORF1ab/nsp31742Y1742NTacAac33B.1.1600.000094
ORF1ab/nsp31742Y1742YtaCtaT33B.1.160.150.014851
ORF1ab/nsp31742Y1742YtaCtaT33B.1.177.170.002463
ORF1ab/nsp31742Y1742YtaCtaT33B.1.177.330.004934
ORF1ab/nsp31742Y1742YtaCtaT33B.1.3490.002144
ORF1ab/nsp31742Y1742YtaCtaT33B.1.36.260.008571
ORF1ab/nsp31742Y1742YtaCtaT33B.1.3750.002459
ORF1ab/nsp31742Y1742FtActTc33B.1.4270.000151
ORF1ab/nsp31742Y1742YtaCtaT33B.1.438.10.000322
ORF1ab/nsp31742Y1742YtaCtaT33B.1.4990.003151
ORF1ab/nsp31742Y1742YtaCtaT33B.1.5090.002597
ORF1ab/nsp31742Y1742YtaCtaT33B.1.5380.024194
ORF1ab/nsp31742Y1742YtaCtaT33B.1.617.10.000387
ORF1ab/nsp31742Y1742YtaCtaT33B.450.011494
ORF1ab/nsp31742Y1742YtaCtaT33C.160.003181
ORF1ab/nsp31742Y1742YtaCtaT33C.36.30.001702
ORF1ab/nsp31742Y1742YtaCtaT33D.20.000225
ORF1ab/nsp31742Y1742YtaCtaT33P.1.10.000953
ORF1ab/nsp31742Y1742YtaCtaT33P.50.041096
ORF1ab/nsp31742Y1742YtaCtaT33R.10.00027
ORF1ab/nsp31742Y1742XtaCtaA220.111111
ORF1ab/nsp31742Y1742YtaCtaT22A.50.003846
ORF1ab/nsp31742Y1742YtaCtaT22AD.20.000438
ORF1ab/nsp31742Y1742StActCc22All0
ORF1ab/nsp31742Y1742YtaCtaT22AU.30.004219
ORF1ab/nsp31742Y1742YtaCtaT22AY.1040.003968
ORF1ab/nsp31742Y1742YtaCtaT22AY.120.000632
ORF1ab/nsp31742Y1742NTacAac22AY.420.00008
ORF1ab/nsp31742Y1742NTacAac22AY.430.000009
ORF1ab/nsp31742Y1742delTAC---22AY.430.000009
ORF1ab/nsp31742Y1742delTAC---22AY.46.20.001271
ORF1ab/nsp31742Y1742YtaCtaT22AY.46.30.001867
ORF1ab/nsp31742Y1742YtaCtaT22AY.46.50.000397
ORF1ab/nsp31742Y1742YtaCtaT22AY.5.30.000675
ORF1ab/nsp31742Y1742YtaCtaT22AY.510.001818
ORF1ab/nsp31742Y1742YtaCtaT22AY.680.000547
ORF1ab/nsp31742Y1742YtaCtaT22AY.740.000231
ORF1ab/nsp31742Y1742YtaCtaT22AY.840.000875
ORF1ab/nsp31742Y1742YtaCtaT22AY.99.20.000184
ORF1ab/nsp31742Y1742CtActGc22B.10.000018
ORF1ab/nsp31742Y1742FtActTc22B.10.000018
ORF1ab/nsp31742Y1742NTacAac22B.10.000018
ORF1ab/nsp31742Y1742del1taCta-22B.10.000018
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.10.000653
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.1860.006873
ORF1ab/nsp31742Y1742NTacAac22B.1.1.1890.003026
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.2040.006079
ORF1ab/nsp31742Y1742delTAC---22B.1.1.2360.013793
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.2630.003115
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.2690.002706
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.2790.002242
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.3060.000877
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.3120.003824
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.3360.033333
ORF1ab/nsp31742Y1742YtaCtaT22B.1.1.520.02439
ORF1ab/nsp31742Y1742NTacAac22B.1.1.70.000002
ORF1ab/nsp31742Y1742DTacGac22B.1.1.70.000002
ORF1ab/nsp31742Y1742CtActGc22B.1.1.70.000002
ORF1ab/nsp31742Y1742delTAC---22B.1.177.40.000422
ORF1ab/nsp31742Y1742YtaCtaT22B.1.177.50.002484
ORF1ab/nsp31742Y1742YtaCtaT22B.1.2400.000431
ORF1ab/nsp31742Y1742YtaCtaT22B.1.258.170.000208
ORF1ab/nsp31742Y1742YtaCtaT22B.1.36.160.002849
ORF1ab/nsp31742Y1742delTAC---22B.1.36.170.000988
ORF1ab/nsp31742Y1742YtaCtaT22B.1.36.190.018519
ORF1ab/nsp31742Y1742YtaCtaT22B.1.3960.001411
ORF1ab/nsp31742Y1742YtaCtaT22B.1.4590.008163
ORF1ab/nsp31742Y1742YtaCtaT22B.1.5640.000852
ORF1ab/nsp31742Y1742YtaCtaT22B.1.5770.001375
ORF1ab/nsp31742Y1742FtActTc22B.1.5960.000174
ORF1ab/nsp31742Y1742YtaCtaT22B.1.6190.001742
ORF1ab/nsp31742Y1742YtaCtaT22B.1.6200.001892
ORF1ab/nsp31742Y1742YtaCtaT22B.1.6270.00404
ORF1ab/nsp31742Y1742YtaCtaT22B.310.007463
ORF1ab/nsp31742Y1742YtaCtaT22N.30.011628
ORF1ab/nsp31742Y1742YtaCtaT22P.1.70.000639
ORF1ab/nsp31742Y1742YtaCtaT22P.1.80.009569
ORF1ab/nsp31742Y1742delTAC---11A0.000387
ORF1ab/nsp31742Y1742YtaCtaT11A.10.000282
ORF1ab/nsp31742Y1742ITACATT11All0
ORF1ab/nsp31742Y1742YtaCtaT11AW.10.003049
ORF1ab/nsp31742Y1742YtaCtaT11AY.10.000396
ORF1ab/nsp31742Y1742delTAC---11AY.1000.000046
ORF1ab/nsp31742Y1742YtaCtaT11AY.1070.000466
ORF1ab/nsp31742Y1742delTAC---11AY.1110.000183
ORF1ab/nsp31742Y1742del1tACt-T11AY.1200.000037
ORF1ab/nsp31742Y1742YtaCtaT11AY.120.10.000321
ORF1ab/nsp31742Y1742YtaCtaT11AY.130.000161
ORF1ab/nsp31742Y1742YtaCtaT11AY.16.10.00047
ORF1ab/nsp31742Y1742YtaCtaT11AY.190.00114
ORF1ab/nsp31742Y1742delTAC---11AY.190.00114
ORF1ab/nsp31742Y1742delTAC---11AY.250.000006
ORF1ab/nsp31742Y1742DTacGac11AY.250.000006
ORF1ab/nsp31742Y1742DTacGac11AY.260.000028
ORF1ab/nsp31742Y1742YtaCtaT11AY.280.00189
ORF1ab/nsp31742Y1742YtaCtaT11AY.300.000396
ORF1ab/nsp31742Y1742YtaCtaT11AY.320.000532
ORF1ab/nsp31742Y1742NTacAac11AY.320.000532
ORF1ab/nsp31742Y1742CtActGc11AY.330.000067
ORF1ab/nsp31742Y1742delTAC---11AY.330.000067
ORF1ab/nsp31742Y1742YtaCtaT11AY.34.10.00051
ORF1ab/nsp31742Y1742YtaCtaT11AY.350.000233
ORF1ab/nsp31742Y1742CtActGc11AY.390.000025
ORF1ab/nsp31742Y1742HTacCac11AY.40.000002
ORF1ab/nsp31742Y1742del2TAc--c11AY.40.000002
ORF1ab/nsp31742Y1742NTacAac11AY.410.000294
ORF1ab/nsp31742Y1742YtaCtaT11AY.410.000294
ORF1ab/nsp31742Y1742DTacGac11AY.440.000006
ORF1ab/nsp31742Y1742delTAC---11AY.440.000006
ORF1ab/nsp31742Y1742NTacAac11AY.460.000104
ORF1ab/nsp31742Y1742YtaCtaT11AY.46.20.000635
ORF1ab/nsp31742Y1742delTAC---11AY.50.000021
ORF1ab/nsp31742Y1742YtaCtaT11AY.5.40.000277
ORF1ab/nsp31742Y1742YtaCtaT11AY.520.000814
ORF1ab/nsp31742Y1742YtaCtaT11AY.530.000288
ORF1ab/nsp31742Y1742DTacGac11AY.540.000095
ORF1ab/nsp31742Y1742YtaCtaT11AY.550.000917
ORF1ab/nsp31742Y1742YtaCtaT11AY.570.000656
ORF1ab/nsp31742Y1742delTAC---11AY.60.000041
ORF1ab/nsp31742Y1742YtaCtaT11AY.690.000187
ORF1ab/nsp31742Y1742delTAC---11AY.750.000056
ORF1ab/nsp31742Y1742YtaCtaT11AY.770.001127
ORF1ab/nsp31742Y1742YtaCtaT11AY.800.001129
ORF1ab/nsp31742Y1742YtaCtaT11AY.820.001357
ORF1ab/nsp31742Y1742YtaCtaT11AY.90.000068
ORF1ab/nsp31742Y1742delTAC---11AY.9.20.000037
ORF1ab/nsp31742Y1742YtaCtaT11AY.940.000443
ORF1ab/nsp31742Y1742YtaCtaT11AY.950.000761
ORF1ab/nsp31742Y1742NTacAac11AY.960.002075
ORF1ab/nsp31742Y1742YtaCtaT11AY.970.001701
ORF1ab/nsp31742Y1742NTacAac11AY.980.000079
ORF1ab/nsp31742Y1742delTAC---11AY.990.001049
ORF1ab/nsp31742Y1742delTAC---11AY.99.10.001553
ORF1ab/nsp31742Y1742YtaCtaT11AZ.30.00152
ORF1ab/nsp31742Y1742DTacGac11B.10.000009
ORF1ab/nsp31742Y1742XtaCtaA11B.10.000009
ORF1ab/nsp31742Y1742delTAC---11B.1.10.000018
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.100.001115
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.1350.004695
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.1890.001513
ORF1ab/nsp31742Y1742NTacAac11B.1.1.1920.002309
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.2080.012195
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.2280.003049
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.2370.005405
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.2770.000759
ORF1ab/nsp31742Y1742XtaCtaA11B.1.1.2770.000759
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.2800.003086
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.2970.002237
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.310.066667
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp31742Y1742StActCc11B.1.1.3260.001761
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.330.000421
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3330.001076
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3480.000796
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3540.004386
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3600.03125
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3690.000446
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.370.000193
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.390.00051
ORF1ab/nsp31742Y1742NTacAac11B.1.1.390.00051
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3910.008547
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3970.002252
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.3980.003226
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.4040.015873
ORF1ab/nsp31742Y1742NTacAac11B.1.1.4090.002833
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.4130.006897
ORF1ab/nsp31742Y1742DTacGac11B.1.1.4200.001006
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.4250.045455
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.4310.016129
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.4330.001425
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.440.00241
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.4530.008475
ORF1ab/nsp31742Y1742delTAC---11B.1.1.460.004367
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1.630.000386
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1240.007812
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1310.008772
ORF1ab/nsp31742Y1742NTacAac11B.1.160.140.002119
ORF1ab/nsp31742Y1742YtaCtaT11B.1.160.300.002976
ORF1ab/nsp31742Y1742delTAC---11B.1.160.70.002079
ORF1ab/nsp31742Y1742HTacCac11B.1.1770.000013
ORF1ab/nsp31742Y1742DTacGac11B.1.1770.000013
ORF1ab/nsp31742Y1742NTacAac11B.1.1770.000013
ORF1ab/nsp31742Y1742YtaCtaT11B.1.177.120.000152
ORF1ab/nsp31742Y1742DTacGac11B.1.177.150.000631
ORF1ab/nsp31742Y1742delTAC---11B.1.177.160.000664
ORF1ab/nsp31742Y1742YtaCtaT11B.1.177.180.00116
ORF1ab/nsp31742Y1742delTAC---11B.1.177.210.000076
ORF1ab/nsp31742Y1742NTacAac11B.1.177.310.011494
ORF1ab/nsp31742Y1742YtaCtaT11B.1.177.440.000519
ORF1ab/nsp31742Y1742NTacAac11B.1.177.440.000519
ORF1ab/nsp31742Y1742delTAC---11B.1.177.540.000606
ORF1ab/nsp31742Y1742YtaCtaT11B.1.177.570.000281
ORF1ab/nsp31742Y1742delTAC---11B.1.177.570.000281
ORF1ab/nsp31742Y1742delTAC---11B.1.177.60.000977
ORF1ab/nsp31742Y1742YtaCtaT11B.1.177.60.000977
ORF1ab/nsp31742Y1742delTAC---11B.1.177.630.002703
ORF1ab/nsp31742Y1742delTAC---11B.1.177.690.001484
ORF1ab/nsp31742Y1742YtaCtaT11B.1.177.70.000165
ORF1ab/nsp31742Y1742YtaCtaT11B.1.1950.005025
ORF1ab/nsp31742Y1742HTacCac11B.1.20.000009
ORF1ab/nsp31742Y1742YtaCtaT11B.1.2060.000816
ORF1ab/nsp31742Y1742YtaCtaT11B.1.2100.002132
ORF1ab/nsp31742Y1742YtaCtaT11B.1.214.10.02
ORF1ab/nsp31742Y1742YtaCtaT11B.1.214.20.0006
ORF1ab/nsp31742Y1742NTacAac11B.1.2210.000071
ORF1ab/nsp31742Y1742YtaCtaT11B.1.230.006061
ORF1ab/nsp31742Y1742YtaCtaT11B.1.2320.000537
ORF1ab/nsp31742Y1742YtaCtaT11B.1.2360.002053
ORF1ab/nsp31742Y1742YtaCtaT11B.1.2390.001221
ORF1ab/nsp31742Y1742FtActTc11B.1.243.10.022222
ORF1ab/nsp31742Y1742DTacGac11B.1.2580.000067
ORF1ab/nsp31742Y1742delTAC---11B.1.258.110.000396
ORF1ab/nsp31742Y1742NTacAac11B.1.258.110.000396
ORF1ab/nsp31742Y1742YtaCtaT11B.1.258.140.00098
ORF1ab/nsp31742Y1742YtaCtaT11B.1.3240.001605
ORF1ab/nsp31742Y1742YtaCtaT11B.1.3290.000608
ORF1ab/nsp31742Y1742YtaCtaT11B.1.3320.003497
ORF1ab/nsp31742Y1742XtaCtaG11B.1.360.000146
ORF1ab/nsp31742Y1742YtaCtaT11B.1.36.10.00114
ORF1ab/nsp31742Y1742YtaCtaT11B.1.36.170.000494
ORF1ab/nsp31742Y1742delTAC---11B.1.36.180.00042
ORF1ab/nsp31742Y1742YtaCtaT11B.1.36.220.001208
ORF1ab/nsp31742Y1742YtaCtaT11B.1.36.70.004
ORF1ab/nsp31742Y1742YtaCtaT11B.1.3670.000792
ORF1ab/nsp31742Y1742YtaCtaT11B.1.3690.000285
ORF1ab/nsp31742Y1742YtaCtaT11B.1.3980.002976
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4010.008197
ORF1ab/nsp31742Y1742del1TAC-NN11B.1.4090.000781
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4090.000781
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4280.00102
ORF1ab/nsp31742Y1742NTacAac11B.1.4290.000024
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4360.001029
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4560.003268
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4690.00361
ORF1ab/nsp31742Y1742YtaCtaT11B.1.4930.025641
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5030.002488
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5070.011236
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5100.026316
ORF1ab/nsp31742Y1742DTacGac11B.1.5170.000427
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5600.00463
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5610.000397
ORF1ab/nsp31742Y1742XtaCtaA11B.1.5640.000426
ORF1ab/nsp31742Y1742NTacAac11B.1.5650.00081
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5650.00081
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5670.003333
ORF1ab/nsp31742Y1742YtaCtaT11B.1.5800.004065
ORF1ab/nsp31742Y1742XtaCtaA11B.1.6090.000479
ORF1ab/nsp31742Y1742ITACATT11B.1.617.10.000129
ORF1ab/nsp31742Y1742NTacAac11B.1.617.20.000004
ORF1ab/nsp31742Y1742StActCc11B.1.617.20.000004
ORF1ab/nsp31742Y1742XtaCtaA11B.1.617.20.000004
ORF1ab/nsp31742Y1742YtaCtaT11B.1.6230.000536
ORF1ab/nsp31742Y1742YtaCtaT11B.1.6340.003425
ORF1ab/nsp31742Y1742YtaCtaT11B.1.6390.021739
ORF1ab/nsp31742Y1742YtaCtaT11C.140.004329
ORF1ab/nsp31742Y1742YtaCtaT11C.310.017857
ORF1ab/nsp31742Y1742YtaCtaT11N.50.001767
ORF1ab/nsp31742Y1742DTacGac11P.1.150.000232
ORF1ab/nsp31742Y1742YtaCtaT11P.1.20.001156
ORF1ab/nsp31742Y1742YtaCtaT11P.1.90.004808
ORF1ab/nsp31742Y1742YtaCtaT11P.30.001595
ORF1ab/nsp31742Y1742YtaCtaT11Q.20.000613
ORF1ab/nsp31742Y1742delTAC---11Q.80.000165
ORF1ab/nsp31742Y1742FtActTc11R.10.00009
ORF1ab/nsp31742Y1742YtaCtaT11S.10.00495
ORF1ab/nsp31742Y1742delTAC---11U.30.003861
ORF1ab/nsp31742Y1742YtaCtaT11W.30.005263