CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 174 & Codon = Tac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3174D174YD992YnonsynGacTac2136213613239-3241

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3174D174YGacTac21362136All0.000409
ORF1ab/nsp3174D174YGacTac470470B.10.004305
ORF1ab/nsp3174D174YGacTac447447B.1.1270.982418
ORF1ab/nsp3174D174YGacTac262262AY.40.000408
ORF1ab/nsp3174D174YGacTac151151B.1.1.70.000135
ORF1ab/nsp3174D174YGacTac135135AY.430.000598
ORF1ab/nsp3174D174YGacTac104104AY.250.000626
ORF1ab/nsp3174D174YGacTac4646B.1.617.20.000173
ORF1ab/nsp3174D174YGacTac3535AY.440.000213
ORF1ab/nsp3174D174YGacTac3535B.1.20.000308
ORF1ab/nsp3174D174YGacTac3434B.1.1.2220.006936
ORF1ab/nsp3174D174YGacTac2828AY.470.000871
ORF1ab/nsp3174D174YGacTac2525AY.4.50.002687
ORF1ab/nsp3174D174YGacTac1919AY.1030.000118
ORF1ab/nsp3174D174YGacTac1717AY.30.000169
ORF1ab/nsp3174D174YGacTac1616B.1.10.00029
ORF1ab/nsp3174D174YGacTac1515B.1.1.2940.018987
ORF1ab/nsp3174D174YGacTac1212AY.9.10.001005
ORF1ab/nsp3174D174YGacTac1212B.1.1600.000374
ORF1ab/nsp3174D174YGacTac1212P.10.000189
ORF1ab/nsp3174D174YGacTac1111AY.420.000443
ORF1ab/nsp3174D174YGacTac1010B.1.1770.000132
ORF1ab/nsp3174D174YGacTac99B.1.1.2140.000499
ORF1ab/nsp3174D174YGacTac99B.1.1.560.160714
ORF1ab/nsp3174D174YGacTac99B.1.3510.000268
ORF1ab/nsp3174D174YGacTac88B.1.1.5190.000318
ORF1ab/nsp3174D174YGacTac77AY.1020.000186
ORF1ab/nsp3174D174YGacTac66B.1.1.2160.005343
ORF1ab/nsp3174D174YGacTac66B.1.177.730.003398
ORF1ab/nsp3174D174YGacTac66B.1.4590.02449
ORF1ab/nsp3174D174YGacTac55AY.1200.000186
ORF1ab/nsp3174D174YGacTac55AY.290.000079
ORF1ab/nsp3174D174YGacTac55AY.640.002976
ORF1ab/nsp3174D174YGacTac55AY.90.000338
ORF1ab/nsp3174D174YGacTac44AY.80.002424
ORF1ab/nsp3174D174YGacTac44AY.850.001709
ORF1ab/nsp3174D174YGacTac44B.1.1.3330.004306
ORF1ab/nsp3174D174YGacTac44D.20.0003
ORF1ab/nsp3174D174YGacTac33AK.10.037975
ORF1ab/nsp3174D174YGacTac33AY.1190.000106
ORF1ab/nsp3174D174YGacTac33AY.20.001068
ORF1ab/nsp3174D174YGacTac33AY.320.001597
ORF1ab/nsp3174D174YGacTac33AY.4.20.000065
ORF1ab/nsp3174D174YGacTac33AY.46.50.000595
ORF1ab/nsp3174D174YGacTac33AY.610.000314
ORF1ab/nsp3174D174YGacTac33B.1.2400.000647
ORF1ab/nsp3174D174YGacTac33B.1.4530.009709
ORF1ab/nsp3174D174YGacTac33P.1.140.000143
ORF1ab/nsp3174D174YGacTac22A.280.005291
ORF1ab/nsp3174D174YGacTac22AY.1210.000271
ORF1ab/nsp3174D174YGacTac22AY.200.000078
ORF1ab/nsp3174D174YGacTac22AY.260.000057
ORF1ab/nsp3174D174YGacTac22AY.3.10.000171
ORF1ab/nsp3174D174YGacTac22AY.340.000194
ORF1ab/nsp3174D174YGacTac22AY.360.000296
ORF1ab/nsp3174D174YGacTac22AY.46.10.002053
ORF1ab/nsp3174D174YGacTac22AY.46.40.000329
ORF1ab/nsp3174D174YGacTac22AY.580.001815
ORF1ab/nsp3174D174YGacTac22AY.75.10.000361
ORF1ab/nsp3174D174YGacTac22B.1.1.1890.003026
ORF1ab/nsp3174D174YGacTac22B.1.1.2400.00939
ORF1ab/nsp3174D174YGacTac22B.1.1.250.001137
ORF1ab/nsp3174D174YGacTac22B.1.1.5210.010695
ORF1ab/nsp3174D174YGacTac22B.1.177.710.020202
ORF1ab/nsp3174D174YGacTac22B.1.214.20.001199
ORF1ab/nsp3174D174YGacTac22B.1.360.000292
ORF1ab/nsp3174D174YGacTac22B.1.4280.002041
ORF1ab/nsp3174D174YGacTac22B.1.428.20.066667
ORF1ab/nsp3174D174YGacTac22B.1.4560.006536
ORF1ab/nsp3174D174YGacTac22B.1.5260.000047
ORF1ab/nsp3174D174YGacTac22B.1.5610.000794
ORF1ab/nsp3174D174YGacTac22B.1.5950.000522
ORF1ab/nsp3174D174YGacTac22B.1.6340.006849
ORF1ab/nsp3174D174YGacTac22B.3.10.003317
ORF1ab/nsp3174D174YGacTac22Q.80.00033
ORF1ab/nsp3174D174YGacTac22R.10.00018
ORF1ab/nsp3174D174YGacTac11A0.000387
ORF1ab/nsp3174D174YGacTac11A.2.50.000499
ORF1ab/nsp3174D174YGacTac11AD.20.000219
ORF1ab/nsp3174D174YGacTac11AY.1000.000046
ORF1ab/nsp3174D174YGacTac11AY.1050.000643
ORF1ab/nsp3174D174YGacTac11AY.1160.000287
ORF1ab/nsp3174D174YGacTac11AY.1180.000063
ORF1ab/nsp3174D174YGacTac11AY.130.000161
ORF1ab/nsp3174D174YGacTac11AY.170.008197
ORF1ab/nsp3174D174YGacTac11AY.230.00007
ORF1ab/nsp3174D174YGacTac11AY.390.000025
ORF1ab/nsp3174D174YGacTac11AY.450.000122
ORF1ab/nsp3174D174YGacTac11AY.50.000021
ORF1ab/nsp3174D174YGacTac11AY.500.000799
ORF1ab/nsp3174D174YGacTac11AY.550.000917
ORF1ab/nsp3174D174YGacTac11AY.560.001605
ORF1ab/nsp3174D174YGacTac11AY.590.00053
ORF1ab/nsp3174D174YGacTac11AY.60.000041
ORF1ab/nsp3174D174YGacTac11AY.620.000436
ORF1ab/nsp3174D174YGacTac11AY.650.000533
ORF1ab/nsp3174D174YGacTac11AY.70.000196
ORF1ab/nsp3174D174YGacTac11AY.7.10.000113
ORF1ab/nsp3174D174YGacTac11AY.7.20.000559
ORF1ab/nsp3174D174YGacTac11AY.710.000475
ORF1ab/nsp3174D174YGacTac11AY.840.000437
ORF1ab/nsp3174D174YGacTac11AY.870.000833
ORF1ab/nsp3174D174YGacTac11AY.99.20.000092
ORF1ab/nsp3174D174YGacTac11AZ.20.000821
ORF1ab/nsp3174D174YGacTac11B.1.1.1570.000913
ORF1ab/nsp3174D174YGacTac11B.1.1.1590.004673
ORF1ab/nsp3174D174YGacTac11B.1.1.1920.002309
ORF1ab/nsp3174D174YGacTac11B.1.1.2740.005051
ORF1ab/nsp3174D174YGacTac11B.1.1.280.000311
ORF1ab/nsp3174D174YGacTac11B.1.1.3060.000438
ORF1ab/nsp3174D174YGacTac11B.1.1.3170.000412
ORF1ab/nsp3174D174YGacTac11B.1.1.5140.038462
ORF1ab/nsp3174D174YGacTac11B.1.1.630.000386
ORF1ab/nsp3174D174YGacTac11B.1.1470.000756
ORF1ab/nsp3174D174YGacTac11B.1.1660.008475
ORF1ab/nsp3174D174YGacTac11B.1.177.460.000918
ORF1ab/nsp3174D174YGacTac11B.1.177.520.001757
ORF1ab/nsp3174D174YGacTac11B.1.177.560.000668
ORF1ab/nsp3174D174YGacTac11B.1.177.800.001912
ORF1ab/nsp3174D174YGacTac11B.1.3130.006579
ORF1ab/nsp3174D174YGacTac11B.1.351.30.000876
ORF1ab/nsp3174D174YGacTac11B.1.3980.002976
ORF1ab/nsp3174D174YGacTac11B.1.4110.003704
ORF1ab/nsp3174D174YGacTac11B.1.5250.000113
ORF1ab/nsp3174D174YGacTac11B.1.5770.000687
ORF1ab/nsp3174D174YGacTac11B.1.5960.000087
ORF1ab/nsp3174D174YGacTac11B.1.5990.00365
ORF1ab/nsp3174D174YGacTac11B.1.617.10.000129
ORF1ab/nsp3174D174YGacTac11B.1.6210.000089
ORF1ab/nsp3174D174YGacTac11B.1.6370.000073
ORF1ab/nsp3174D174YGacTac11C.370.000116
ORF1ab/nsp3174D174YGacTac11D.50.004975
ORF1ab/nsp3174D174YGacTac11P.1.170.000162
ORF1ab/nsp3174D174YGacTac11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.