CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1739 & Codon = gcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31739A1739AA2557AsyngcGgcT13793122990.8916847934-7936

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31739A1739AgcGgcT1229913793All0.002352
ORF1ab/nsp31739A1739AgcGgcT27742848B.1.617.20.010445
ORF1ab/nsp31739A1739AgcGgcT27972797AY.410.822163
ORF1ab/nsp31739A1739AgcGgcT14371491AY.1030.008922
ORF1ab/nsp31739A1739AgcGgcT6501058B.1.1.70.000582
ORF1ab/nsp31739A1739AgcGgcT350423AY.40.000545
ORF1ab/nsp31739A1739AgcGgcT370374AY.420.014885
ORF1ab/nsp31739A1739AgcGgcT194341B.1.20.001708
ORF1ab/nsp31739A1739AgcGgcT339340B.1.2650.43075
ORF1ab/nsp31739A1739AgcGgcT271293AY.430.001201
ORF1ab/nsp31739A1739AgcGgcT245253P.10.00386
ORF1ab/nsp31739A1739AgcGgcT217218AY.330.014491
ORF1ab/nsp31739A1739AgcGgcT169180AY.1020.004481
ORF1ab/nsp31739A1739AgcGgcT100152AY.390.002471
ORF1ab/nsp31739A1739AgcGgcT149149C.30.11
ORF1ab/nsp31739A1739AgcGgcT96130B.10.000879
ORF1ab/nsp31739A1739AgcGgcT86120AY.440.000523
ORF1ab/nsp31739A1739AgcGgcT114119R.10.010261
ORF1ab/nsp31739A1739AgcGgcT74112AY.250.000445
ORF1ab/nsp31739A1739AgcGgcT9898B.1.1.4200.098592
ORF1ab/nsp31739A1739AgcGgcT8588AY.9.10.007117
ORF1ab/nsp31739A1739AgcGgcT679AY.710.00285
ORF1ab/nsp31739A1739AgcGgcT4274B.1.10.000762
ORF1ab/nsp31739A1739AgcGgcT6767B.1.360.009775
ORF1ab/nsp31739A1739AgcGgcT5066AY.30.000497
ORF1ab/nsp31739A1739AgcGgcT6666C.300.11399
ORF1ab/nsp31739A1739AgcGgcT4264B.1.1770.000553
ORF1ab/nsp31739A1739AgcGgcT6262AY.140.005457
ORF1ab/nsp31739A1739AgcGgcT6161AY.130.00982
ORF1ab/nsp31739A1739AgcGgcT5555B.1.1600.001715
ORF1ab/nsp31739A1739AgcGgcT141B.1.1.10.000327
ORF1ab/nsp31739A1739AgcGgcT3940B.1.4290.000918
ORF1ab/nsp31739A1739AgcGgcT3839AY.460.003955
ORF1ab/nsp31739A1739AgcGgcT3034B.1.3510.000892
ORF1ab/nsp31739A1739AgcGgcT3233B.1.1.2220.006528
ORF1ab/nsp31739A1739AgcGgcT3333B.1.6120.087533
ORF1ab/nsp31739A1739AgcGgcT231AY.10.000791
ORF1ab/nsp31739A1739AgcGgcT2531AY.200.000972
ORF1ab/nsp31739A1739AgcGgcT2929AY.120.10.00931
ORF1ab/nsp31739A1739AgcGgcT2929AY.75.10.005229
ORF1ab/nsp31739A1739AgcGgcT2829B.1.5260.000658
ORF1ab/nsp31739A1739AgcGgcT2727B.1.177.491
ORF1ab/nsp31739A1739AgcGgcT2626AY.9.20.000955
ORF1ab/nsp31739A1739AgcGgcT524AY.230.000349
ORF1ab/nsp31739A1739AgcGgcT1823AY.290.000284
ORF1ab/nsp31739A1739AgcGgcT2323AY.46.60.001661
ORF1ab/nsp31739A1739AgcGgcT2022AY.3.10.001705
ORF1ab/nsp31739A1739AgcGgcT2122B.1.1.5190.000834
ORF1ab/nsp31739A1739AgcGgcT1221B.1.2210.000852
ORF1ab/nsp31739A1739AgcGgcT2121B.1.5950.00548
ORF1ab/nsp31739A1739AgcGgcT1920AY.1210.002571
ORF1ab/nsp31739A1739AgcGgcT1520AY.260.000425
ORF1ab/nsp31739A1739AgcGgcT1920AY.450.002312
ORF1ab/nsp31739A1739AgcGgcT2020B.1.3820.178571
ORF1ab/nsp31739A1739AgcGgcT1919AE.80.009291
ORF1ab/nsp31739A1739AgcGgcT1318AY.1190.000459
ORF1ab/nsp31739A1739AgcGgcT1818AY.50.000372
ORF1ab/nsp31739A1739AgcGgcT1517AY.98.10.000726
ORF1ab/nsp31739A1739AgcGgcT1416AY.1000.000644
ORF1ab/nsp31739A1739AgcGgcT1216AY.470.000373
ORF1ab/nsp31739A1739AgcGgcT1016AY.610.001048
ORF1ab/nsp31739A1739AgcGgcT1616B.1.258.140.015686
ORF1ab/nsp31739A1739AgcGgcT1515B.1.1.330.006313
ORF1ab/nsp31739A1739AgcGgcT1515B.1.3690.004278
ORF1ab/nsp31739A1739AgcGgcT1014AY.670.004643
ORF1ab/nsp31739A1739AgcGgcT1113AY.680.003011
ORF1ab/nsp31739A1739AgcGgcT1212P.1.10.003812
ORF1ab/nsp31739A1739AgcGgcT611AY.1200.000223
ORF1ab/nsp31739A1739AgcGgcT911AY.60.00037
ORF1ab/nsp31739A1739AgcGgcT1011AY.980.00079
ORF1ab/nsp31739A1739AgcGgcT1011B.1.617.10.00129
ORF1ab/nsp31739A1739AgcGgcT511B.1.6370.000365
ORF1ab/nsp31739A1739AgcGgcT1111C.370.001277
ORF1ab/nsp31739A1739AgcGgcT1010B.1.4060.060606
ORF1ab/nsp31739A1739AgcGgcT810P.20.001493
ORF1ab/nsp31739A1739AgcGgcT89AY.39.10.000317
ORF1ab/nsp31739A1739AgcGgcT69AY.99.20.000553
ORF1ab/nsp31739A1739AgcGgcT89B.1.1.3170.003294
ORF1ab/nsp31739A1739AgcGgcT99B.1.1.3580.310345
ORF1ab/nsp31739A1739AgcGgcT88AY.1110.001465
ORF1ab/nsp31739A1739AgcGgcT88AY.340.000776
ORF1ab/nsp31739A1739AgcGgcT78B.1.4270.000353
ORF1ab/nsp31739A1739AgcGgcT18B.1.5960.000087
ORF1ab/nsp31739A1739AgcGgcT58P.1.140.000239
ORF1ab/nsp31739A1739AgcGgcT88Q.30.00116
ORF1ab/nsp31739A1739AgcGgcT77AY.5.40.001937
ORF1ab/nsp31739A1739AgcGgcT77AY.7.10.000789
ORF1ab/nsp31739A1739AgcGgcT67AY.750.000336
ORF1ab/nsp31739A1739AgcGgcT77B.1.2430.000487
ORF1ab/nsp31739A1739AgcGgcT77B.1.36.290.003621
ORF1ab/nsp31739A1739AgcGgcT77B.1.6090.003356
ORF1ab/nsp31739A1739AgcGgcT57B.1.6210.000443
ORF1ab/nsp31739A1739AgcGgcT56AY.1180.000313
ORF1ab/nsp31739A1739AgcGgcT26AY.20.000712
ORF1ab/nsp31739A1739AgcGgcT16AY.380.000499
ORF1ab/nsp31739A1739AgcGgcT46AY.4.20.000087
ORF1ab/nsp31739A1739AgcGgcT66B.1.177.520.010545
ORF1ab/nsp31739A1739AgcGgcT66B.1.2320.003224
ORF1ab/nsp31739A1739AgcGgcT55A.30.010482
ORF1ab/nsp31739A1739AgcGgcT55AY.1130.000712
ORF1ab/nsp31739A1739AgcGgcT55AY.220.01046
ORF1ab/nsp31739A1739AgcGgcT45AY.5.30.00135
ORF1ab/nsp31739A1739AgcGgcT55AY.510.004545
ORF1ab/nsp31739A1739AgcGgcT55AY.770.005637
ORF1ab/nsp31739A1739AgcGgcT55AY.920.001436
ORF1ab/nsp31739A1739AgcGgcT25B.1.1.280.000622
ORF1ab/nsp31739A1739AgcGgcT25B.1.36.80.002
ORF1ab/nsp31739A1739AgcGgcT55P.1.170.000809
ORF1ab/nsp31739A1739AgcGgcT44AY.1060.00134
ORF1ab/nsp31739A1739AgcGgcT24AY.360.000296
ORF1ab/nsp31739A1739AgcGgcT44AY.540.000381
ORF1ab/nsp31739A1739AgcGgcT44AY.620.001743
ORF1ab/nsp31739A1739AgcGgcT14AY.740.000116
ORF1ab/nsp31739A1739AgcGgcT44AY.840.00175
ORF1ab/nsp31739A1739AgcGgcT44AZ.30.006079
ORF1ab/nsp31739A1739AgcGgcT34B.1.1.2140.000166
ORF1ab/nsp31739A1739AgcGgcT44B.1.1.2310.012384
ORF1ab/nsp31739A1739AgcGgcT24B.1.1.2980.001724
ORF1ab/nsp31739A1739AgcGgcT14B.1.1.390.00051
ORF1ab/nsp31739A1739AgcGgcT44B.1.1470.003023
ORF1ab/nsp31739A1739AgcGgcT44B.1.177.310.045977
ORF1ab/nsp31739A1739AgcGgcT44B.1.177.40.000844
ORF1ab/nsp31739A1739AgcGgcT44B.1.2220.006768
ORF1ab/nsp31739A1739AgcGgcT44B.1.2400.000862
ORF1ab/nsp31739A1739AgcGgcT44B.1.2410.003247
ORF1ab/nsp31739A1739AgcGgcT44B.1.2580.000266
ORF1ab/nsp31739A1739AgcGgcT44B.1.3910.00451
ORF1ab/nsp31739A1739AgcGgcT44Q.10.000505
ORF1ab/nsp31739A1739AgcGgcT44Q.40.001819
ORF1ab/nsp31739A1739AgcGgcT33A.270.004967
ORF1ab/nsp31739A1739AgcGgcT23AD.20.000438
ORF1ab/nsp31739A1739AgcGgcT33AY.160.001139
ORF1ab/nsp31739A1739AgcGgcT33AY.240.001293
ORF1ab/nsp31739A1739AgcGgcT33AY.300.001187
ORF1ab/nsp31739A1739AgcGgcT33AY.310.055556
ORF1ab/nsp31739A1739AgcGgcT33AY.320.001597
ORF1ab/nsp31739A1739AgcGgcT23AY.350.000466
ORF1ab/nsp31739A1739AgcGgcT33AY.950.002283
ORF1ab/nsp31739A1739AgcGgcT33B0.000383
ORF1ab/nsp31739A1739AgcGgcT13B.1.1.250.000569
ORF1ab/nsp31739A1739AgcGgcT33B.1.1.3060.001315
ORF1ab/nsp31739A1739AgcGgcT33B.1.1.4630.1875
ORF1ab/nsp31739A1739AgcGgcT33B.1.110.30.002155
ORF1ab/nsp31739A1739AgcGgcT33B.1.177.350.002073
ORF1ab/nsp31739A1739AgcGgcT33B.1.3200.003736
ORF1ab/nsp31739A1739AgcGgcT33B.1.3360.007317
ORF1ab/nsp31739A1739AgcGgcT33B.1.5250.000339
ORF1ab/nsp31739A1739AgcGgcT12A.2.5.20.001572
ORF1ab/nsp31739A1739AgcGgcT22A.23.10.001408
ORF1ab/nsp31739A1739AgcGgcT22AY.1160.000574
ORF1ab/nsp31739A1739AgcGgcT22AY.1170.000169
ORF1ab/nsp31739A1739AgcGgcT12AY.16.10.00047
ORF1ab/nsp31739A1739AgcGgcT12AY.190.00114
ORF1ab/nsp31739A1739AgcGgcT12AY.29.10.000221
ORF1ab/nsp31739A1739AgcGgcT22AY.46.20.001271
ORF1ab/nsp31739A1739AgcGgcT22AY.520.001629
ORF1ab/nsp31739A1739AgcGgcT22AY.550.001835
ORF1ab/nsp31739A1739AgcGgcT22AY.580.001815
ORF1ab/nsp31739A1739AgcGgcT22AY.700.000417
ORF1ab/nsp31739A1739AgcGgcT12AY.90.000068
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.2580.006515
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3150.016949
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3180.000604
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3680.006173
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3690.000892
ORF1ab/nsp31739A1739AgcGgcT12B.1.1.3720.000689
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.4240.090909
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.4320.002532
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.4340.000697
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.670.009132
ORF1ab/nsp31739A1739AgcGgcT22B.1.1310.017544
ORF1ab/nsp31739A1739AgcGgcT22B.1.177.170.001642
ORF1ab/nsp31739A1739AgcGgcT22B.1.177.540.001213
ORF1ab/nsp31739A1739AgcGgcT22B.1.220.002635
ORF1ab/nsp31739A1739AgcGgcT22B.1.258.170.000208
ORF1ab/nsp31739A1739AgcGgcT22B.1.3020.026667
ORF1ab/nsp31739A1739AgcGgcT12B.1.351.20.000303
ORF1ab/nsp31739A1739AgcGgcT22B.1.3990.003868
ORF1ab/nsp31739A1739AgcGgcT22B.1.438.10.000215
ORF1ab/nsp31739A1739AgcGgcT22B.1.4620.014493
ORF1ab/nsp31739A1739AgcGgcT22C.10.004785
ORF1ab/nsp31739A1739AgcGgcT12C.360.000911
ORF1ab/nsp31739A1739AgcGgcT22C.390.037736
ORF1ab/nsp31739A1739AgcGgcT22N.40.008511
ORF1ab/nsp31739A1739AgcGgcT22P.1.120.000968
ORF1ab/nsp31739A1739AgcGgcT22P.1.70.000639
ORF1ab/nsp31739A1739AgcGgcT12P.30.001595
ORF1ab/nsp31739A1739AgcGgcT12P.60.003145
ORF1ab/nsp31739A1739AgcGgcT22Q.20.001227
ORF1ab/nsp31739A1739AgcGgcT22Q.80.00033
ORF1ab/nsp31739A1739AgcGgcT11A.2.50.000499
ORF1ab/nsp31739A1739AgcGgcT11AY.100.00053
ORF1ab/nsp31739A1739AgcGgcT11AY.1050.000643
ORF1ab/nsp31739A1739AgcGgcT11AY.1070.000466
ORF1ab/nsp31739A1739AgcGgcT11AY.1080.001103
ORF1ab/nsp31739A1739AgcGgcT11AY.120.000316
ORF1ab/nsp31739A1739AgcGgcT11AY.270.000065
ORF1ab/nsp31739A1739AgcGgcT11AY.280.00189
ORF1ab/nsp31739A1739AgcGgcT11AY.4.30.000842
ORF1ab/nsp31739A1739AgcGgcT11AY.4.40.000409
ORF1ab/nsp31739A1739AgcGgcT11AY.4.50.000107
ORF1ab/nsp31739A1739AgcGgcT11AY.46.10.001027
ORF1ab/nsp31739A1739AgcGgcT11AY.46.50.000198
ORF1ab/nsp31739A1739AgcGgcT11AY.500.000799
ORF1ab/nsp31739A1739AgcGgcT11AY.570.000656
ORF1ab/nsp31739A1739AgcGgcT11AY.590.00053
ORF1ab/nsp31739A1739AgcGgcT11AY.630.000387
ORF1ab/nsp31739A1739AgcGgcT11AY.640.000595
ORF1ab/nsp31739A1739AgcGgcT11AY.70.000196
ORF1ab/nsp31739A1739AgcGgcT11AY.790.001211
ORF1ab/nsp31739A1739AgcGgcT11AY.820.001357
ORF1ab/nsp31739A1739AgcGgcT11AY.860.00083
ORF1ab/nsp31739A1739AgcGgcT11AY.870.000833
ORF1ab/nsp31739A1739AgcGgcT11AY.880.000884
ORF1ab/nsp31739A1739AgcGgcT11AY.890.004902
ORF1ab/nsp31739A1739AgcGgcT11AY.910.00073
ORF1ab/nsp31739A1739AgcGgcT11AY.930.000273
ORF1ab/nsp31739A1739AgcGgcT11AY.960.002075
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1530.001095
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1720.018182
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1920.002309
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1940.00495
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2190.005
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2260.005814
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2410.00207
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2850.006536
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.500.000679
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.700.000341
ORF1ab/nsp31739A1739AgcGgcT11B.1.1280.000635
ORF1ab/nsp31739A1739AgcGgcT11B.1.1570.002985
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.100.000878
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.560.000668
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.580.001332
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.810.000189
ORF1ab/nsp31739A1739AgcGgcT11B.1.214.20.0006
ORF1ab/nsp31739A1739AgcGgcT11B.1.2340.000132
ORF1ab/nsp31739A1739AgcGgcT11B.1.2600.003344
ORF1ab/nsp31739A1739AgcGgcT11B.1.2790.000514
ORF1ab/nsp31739A1739AgcGgcT11B.1.3110.000275
ORF1ab/nsp31739A1739AgcGgcT11B.1.351.30.000876
ORF1ab/nsp31739A1739AgcGgcT11B.1.351.50.0006
ORF1ab/nsp31739A1739AgcGgcT11B.1.36.70.004
ORF1ab/nsp31739A1739AgcGgcT11B.1.3670.000792
ORF1ab/nsp31739A1739AgcGgcT11B.1.4000.000429
ORF1ab/nsp31739A1739AgcGgcT11B.1.4110.003704
ORF1ab/nsp31739A1739AgcGgcT11B.1.4260.001009
ORF1ab/nsp31739A1739AgcGgcT11B.1.466.20.000391
ORF1ab/nsp31739A1739AgcGgcT11B.1.4680.005714
ORF1ab/nsp31739A1739AgcGgcT11B.1.4970.000315
ORF1ab/nsp31739A1739AgcGgcT11B.1.5020.052632
ORF1ab/nsp31739A1739AgcGgcT11B.1.5090.000866
ORF1ab/nsp31739A1739AgcGgcT11B.1.5380.008065
ORF1ab/nsp31739A1739AgcGgcT11B.1.5600.00463
ORF1ab/nsp31739A1739AgcGgcT11B.1.5610.000397
ORF1ab/nsp31739A1739AgcGgcT11B.1.6030.010638
ORF1ab/nsp31739A1739AgcGgcT11B.1.6340.003425
ORF1ab/nsp31739A1739AgcGgcT11C.36.30.000567
ORF1ab/nsp31739A1739AgcGgcT11D.20.000075
ORF1ab/nsp31739A1739AgcGgcT11D.50.004975
ORF1ab/nsp31739A1739AgcGgcT11N.60.007092
ORF1ab/nsp31739A1739AgcGgcT11S.10.00495
ORF1ab/nsp31739A1739AgcGgcT11Y.10.012821