CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1739 & Codon = gcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31739A1739AA2557AsyngcGgcA1379311140.08076567934-7936

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31739A1739AgcGgcA111413793All0.000213
ORF1ab/nsp31739A1739AgcGgcA492848B.1.617.20.000185
ORF1ab/nsp31739A1739AgcGgcA441491AY.1030.000273
ORF1ab/nsp31739A1739AgcGgcA3391058B.1.1.70.000303
ORF1ab/nsp31739A1739AgcGgcA40423AY.40.000062
ORF1ab/nsp31739A1739AgcGgcA1374AY.420.00004
ORF1ab/nsp31739A1739AgcGgcA141341B.1.20.001242
ORF1ab/nsp31739A1739AgcGgcA16293AY.430.000071
ORF1ab/nsp31739A1739AgcGgcA7253P.10.00011
ORF1ab/nsp31739A1739AgcGgcA1218AY.330.000067
ORF1ab/nsp31739A1739AgcGgcA7180AY.1020.000186
ORF1ab/nsp31739A1739AgcGgcA36152AY.390.00089
ORF1ab/nsp31739A1739AgcGgcA32130B.10.000293
ORF1ab/nsp31739A1739AgcGgcA28120AY.440.00017
ORF1ab/nsp31739A1739AgcGgcA5112AY.250.00003
ORF1ab/nsp31739A1739AgcGgcA7575B.1.4230.765306
ORF1ab/nsp31739A1739AgcGgcA2974B.1.10.000526
ORF1ab/nsp31739A1739AgcGgcA1366AY.30.000129
ORF1ab/nsp31739A1739AgcGgcA2264B.1.1770.00029
ORF1ab/nsp31739A1739AgcGgcA4041B.1.1.10.013068
ORF1ab/nsp31739A1739AgcGgcA140B.1.4290.000024
ORF1ab/nsp31739A1739AgcGgcA139AY.460.000104
ORF1ab/nsp31739A1739AgcGgcA334B.1.3510.000089
ORF1ab/nsp31739A1739AgcGgcA2931AY.10.011476
ORF1ab/nsp31739A1739AgcGgcA431AY.200.000155
ORF1ab/nsp31739A1739AgcGgcA1724AY.230.001186
ORF1ab/nsp31739A1739AgcGgcA423AY.290.000063
ORF1ab/nsp31739A1739AgcGgcA122AY.3.10.000085
ORF1ab/nsp31739A1739AgcGgcA122B.1.1.5190.00004
ORF1ab/nsp31739A1739AgcGgcA921B.1.2210.000639
ORF1ab/nsp31739A1739AgcGgcA320AY.260.000085
ORF1ab/nsp31739A1739AgcGgcA120AY.450.000122
ORF1ab/nsp31739A1739AgcGgcA218AY.1190.000071
ORF1ab/nsp31739A1739AgcGgcA217AY.98.10.000097
ORF1ab/nsp31739A1739AgcGgcA216AY.1000.000092
ORF1ab/nsp31739A1739AgcGgcA316AY.470.000093
ORF1ab/nsp31739A1739AgcGgcA616AY.610.000629
ORF1ab/nsp31739A1739AgcGgcA511AY.1200.000186
ORF1ab/nsp31739A1739AgcGgcA111AY.60.000041
ORF1ab/nsp31739A1739AgcGgcA111AY.980.000079
ORF1ab/nsp31739A1739AgcGgcA611B.1.6370.000438
ORF1ab/nsp31739A1739AgcGgcA210P.20.000373
ORF1ab/nsp31739A1739AgcGgcA39AY.99.20.000276
ORF1ab/nsp31739A1739AgcGgcA19B.1.1.3170.000412
ORF1ab/nsp31739A1739AgcGgcA18B.1.4270.00005
ORF1ab/nsp31739A1739AgcGgcA78B.1.5960.00061
ORF1ab/nsp31739A1739AgcGgcA38P.1.140.000143
ORF1ab/nsp31739A1739AgcGgcA17AY.750.000056
ORF1ab/nsp31739A1739AgcGgcA17B.1.6210.000089
ORF1ab/nsp31739A1739AgcGgcA16AY.1180.000063
ORF1ab/nsp31739A1739AgcGgcA46AY.20.001425
ORF1ab/nsp31739A1739AgcGgcA26AY.4.20.000043
ORF1ab/nsp31739A1739AgcGgcA550.277778
ORF1ab/nsp31739A1739AgcGgcA14AY.360.000148
ORF1ab/nsp31739A1739AgcGgcA34AY.740.000347
ORF1ab/nsp31739A1739AgcGgcA24B.1.1.2980.001724
ORF1ab/nsp31739A1739AgcGgcA34B.1.1.390.001529
ORF1ab/nsp31739A1739AgcGgcA33A.20.001985
ORF1ab/nsp31739A1739AgcGgcA13AY.350.000233
ORF1ab/nsp31739A1739AgcGgcA33B.1.177.570.000843
ORF1ab/nsp31739A1739AgcGgcA33B.1.214.30.021429
ORF1ab/nsp31739A1739AgcGgcA12A.2.5.20.001572
ORF1ab/nsp31739A1739AgcGgcA22AY.116.10.000623
ORF1ab/nsp31739A1739AgcGgcA12AY.16.10.00047
ORF1ab/nsp31739A1739AgcGgcA12AY.190.00114
ORF1ab/nsp31739A1739AgcGgcA12AY.29.10.000221
ORF1ab/nsp31739A1739AgcGgcA22AY.990.002099
ORF1ab/nsp31739A1739AgcGgcA12B.1.1.2160.00089
ORF1ab/nsp31739A1739AgcGgcA22B.1.1.2880.003831
ORF1ab/nsp31739A1739AgcGgcA12B.1.1.3720.000689
ORF1ab/nsp31739A1739AgcGgcA12B.1.351.20.000303
ORF1ab/nsp31739A1739AgcGgcA22B.1.5480.071429
ORF1ab/nsp31739A1739AgcGgcA22B.1.6280.000705
ORF1ab/nsp31739A1739AgcGgcA12C.360.000911
ORF1ab/nsp31739A1739AgcGgcA12P.30.001595
ORF1ab/nsp31739A1739AgcGgcA11A0.000387
ORF1ab/nsp31739A1739AgcGgcA11AY.1140.000231
ORF1ab/nsp31739A1739AgcGgcA11AY.120.20.001285
ORF1ab/nsp31739A1739AgcGgcA11AY.480.000465
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.2050.003717
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.2170.003636
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.830.00271
ORF1ab/nsp31739A1739AgcGgcA11B.1.1390.000733
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.260.006993
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.320.00135
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.60.000977
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.650.000665
ORF1ab/nsp31739A1739AgcGgcA11B.1.3700.008
ORF1ab/nsp31739A1739AgcGgcA11B.550.00295
ORF1ab/nsp31739A1739AgcGgcA11B.60.00091
ORF1ab/nsp31739A1739AgcGgcA11B.6.10.026316
ORF1ab/nsp31739A1739AgcGgcA11C.230.005814
ORF1ab/nsp31739A1739AgcGgcA11C.80.004464