CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1739 & Codon = gcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31739A1739AA2557AsyngcGgcA1379311140.08076567934-7936

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31739A1739AgcGgcA111413793All0.000213
ORF1ab/nsp31739A1739AgcGgcA492848B.1.617.20.000185
ORF1ab/nsp31739A1739AgcGgcA441491AY.1030.000273
ORF1ab/nsp31739A1739AgcGgcA3391058B.1.1.70.000303
ORF1ab/nsp31739A1739AgcGgcA40423AY.40.000062
ORF1ab/nsp31739A1739AgcGgcA1374AY.420.00004
ORF1ab/nsp31739A1739AgcGgcA141341B.1.20.001242
ORF1ab/nsp31739A1739AgcGgcA16293AY.430.000071
ORF1ab/nsp31739A1739AgcGgcA7253P.10.00011
ORF1ab/nsp31739A1739AgcGgcA1218AY.330.000067
ORF1ab/nsp31739A1739AgcGgcA7180AY.1020.000186
ORF1ab/nsp31739A1739AgcGgcA36152AY.390.00089
ORF1ab/nsp31739A1739AgcGgcA32130B.10.000293
ORF1ab/nsp31739A1739AgcGgcA28120AY.440.00017
ORF1ab/nsp31739A1739AgcGgcA5112AY.250.00003
ORF1ab/nsp31739A1739AgcGgcA7575B.1.4230.765306
ORF1ab/nsp31739A1739AgcGgcA2974B.1.10.000526
ORF1ab/nsp31739A1739AgcGgcA1366AY.30.000129
ORF1ab/nsp31739A1739AgcGgcA2264B.1.1770.00029
ORF1ab/nsp31739A1739AgcGgcA4041B.1.1.10.013068
ORF1ab/nsp31739A1739AgcGgcA140B.1.4290.000024
ORF1ab/nsp31739A1739AgcGgcA139AY.460.000104
ORF1ab/nsp31739A1739AgcGgcA334B.1.3510.000089
ORF1ab/nsp31739A1739AgcGgcA2931AY.10.011476
ORF1ab/nsp31739A1739AgcGgcA431AY.200.000155
ORF1ab/nsp31739A1739AgcGgcA1724AY.230.001186
ORF1ab/nsp31739A1739AgcGgcA423AY.290.000063
ORF1ab/nsp31739A1739AgcGgcA122AY.3.10.000085
ORF1ab/nsp31739A1739AgcGgcA122B.1.1.5190.00004
ORF1ab/nsp31739A1739AgcGgcA921B.1.2210.000639
ORF1ab/nsp31739A1739AgcGgcA320AY.260.000085
ORF1ab/nsp31739A1739AgcGgcA120AY.450.000122
ORF1ab/nsp31739A1739AgcGgcA218AY.1190.000071
ORF1ab/nsp31739A1739AgcGgcA217AY.98.10.000097
ORF1ab/nsp31739A1739AgcGgcA216AY.1000.000092
ORF1ab/nsp31739A1739AgcGgcA316AY.470.000093
ORF1ab/nsp31739A1739AgcGgcA616AY.610.000629
ORF1ab/nsp31739A1739AgcGgcA511AY.1200.000186
ORF1ab/nsp31739A1739AgcGgcA111AY.60.000041
ORF1ab/nsp31739A1739AgcGgcA111AY.980.000079
ORF1ab/nsp31739A1739AgcGgcA611B.1.6370.000438
ORF1ab/nsp31739A1739AgcGgcA210P.20.000373
ORF1ab/nsp31739A1739AgcGgcA39AY.99.20.000276
ORF1ab/nsp31739A1739AgcGgcA19B.1.1.3170.000412
ORF1ab/nsp31739A1739AgcGgcA18B.1.4270.00005
ORF1ab/nsp31739A1739AgcGgcA78B.1.5960.00061
ORF1ab/nsp31739A1739AgcGgcA38P.1.140.000143
ORF1ab/nsp31739A1739AgcGgcA17AY.750.000056
ORF1ab/nsp31739A1739AgcGgcA17B.1.6210.000089
ORF1ab/nsp31739A1739AgcGgcA16AY.1180.000063
ORF1ab/nsp31739A1739AgcGgcA46AY.20.001425
ORF1ab/nsp31739A1739AgcGgcA26AY.4.20.000043
ORF1ab/nsp31739A1739AgcGgcA550.277778
ORF1ab/nsp31739A1739AgcGgcA14AY.360.000148
ORF1ab/nsp31739A1739AgcGgcA34AY.740.000347
ORF1ab/nsp31739A1739AgcGgcA24B.1.1.2980.001724
ORF1ab/nsp31739A1739AgcGgcA34B.1.1.390.001529
ORF1ab/nsp31739A1739AgcGgcA33A.20.001985
ORF1ab/nsp31739A1739AgcGgcA13AY.350.000233
ORF1ab/nsp31739A1739AgcGgcA33B.1.177.570.000843
ORF1ab/nsp31739A1739AgcGgcA33B.1.214.30.021429
ORF1ab/nsp31739A1739AgcGgcA12A.2.5.20.001572
ORF1ab/nsp31739A1739AgcGgcA22AY.116.10.000623
ORF1ab/nsp31739A1739AgcGgcA12AY.16.10.00047
ORF1ab/nsp31739A1739AgcGgcA12AY.190.00114
ORF1ab/nsp31739A1739AgcGgcA12AY.29.10.000221
ORF1ab/nsp31739A1739AgcGgcA22AY.990.002099
ORF1ab/nsp31739A1739AgcGgcA12B.1.1.2160.00089
ORF1ab/nsp31739A1739AgcGgcA22B.1.1.2880.003831
ORF1ab/nsp31739A1739AgcGgcA12B.1.1.3720.000689
ORF1ab/nsp31739A1739AgcGgcA12B.1.351.20.000303
ORF1ab/nsp31739A1739AgcGgcA22B.1.5480.071429
ORF1ab/nsp31739A1739AgcGgcA22B.1.6280.000705
ORF1ab/nsp31739A1739AgcGgcA12C.360.000911
ORF1ab/nsp31739A1739AgcGgcA12P.30.001595
ORF1ab/nsp31739A1739AgcGgcA11A0.000387
ORF1ab/nsp31739A1739AgcGgcA11AY.1140.000231
ORF1ab/nsp31739A1739AgcGgcA11AY.120.20.001285
ORF1ab/nsp31739A1739AgcGgcA11AY.480.000465
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.2050.003717
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.2170.003636
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.830.00271
ORF1ab/nsp31739A1739AgcGgcA11B.1.1390.000733
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.260.006993
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.320.00135
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.60.000977
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.650.000665
ORF1ab/nsp31739A1739AgcGgcA11B.1.3700.008
ORF1ab/nsp31739A1739AgcGgcA11B.550.00295
ORF1ab/nsp31739A1739AgcGgcA11B.60.00091
ORF1ab/nsp31739A1739AgcGgcA11B.6.10.026316
ORF1ab/nsp31739A1739AgcGgcA11C.230.005814
ORF1ab/nsp31739A1739AgcGgcA11C.80.004464

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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