CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1739 & Codon = Acg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31739A1739TA2557TnonsynGcgAcg1741720.9885067934-7936

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31739A1739TGcgAcg172174All0.000033
ORF1ab/nsp31739A1739TGcgAcg6060AY.1030.000373
ORF1ab/nsp31739A1739TGcgAcg2222B.1.1.70.00002
ORF1ab/nsp31739A1739TGcgAcg2020AY.40.000031
ORF1ab/nsp31739A1739TGcgAcg1919AY.440.000116
ORF1ab/nsp31739A1739TGcgAcg99AY.250.000054
ORF1ab/nsp31739A1739TGcgAcg88AY.290.000126
ORF1ab/nsp31739A1739TGcgAcg44AY.200.000155
ORF1ab/nsp31739A1739TGcgAcg33AY.430.000013
ORF1ab/nsp31739A1739TGcgAcg33AY.9.20.00011
ORF1ab/nsp31739A1739TGcgAcg33B.1.10.000054
ORF1ab/nsp31739A1739TGcgAcg33B.1.177.210.000229
ORF1ab/nsp31739A1739TGcgAcg33B.1.177.790.007026
ORF1ab/nsp31739A1739TGcgAcg33B.1.617.20.000011
ORF1ab/nsp31739A1739TGcgAcg120.055556
ORF1ab/nsp31739A1739TGcgAcg22B.1.20.000018
ORF1ab/nsp31739A1739TGcgAcg11AY.1000.000046
ORF1ab/nsp31739A1739TGcgAcg11AY.1020.000027
ORF1ab/nsp31739A1739TGcgAcg11AY.1070.000466
ORF1ab/nsp31739A1739TGcgAcg11AY.790.001211
ORF1ab/nsp31739A1739TGcgAcg11B.1.1.3890.006061
ORF1ab/nsp31739A1739TGcgAcg11B.1.177.810.000189
ORF1ab/nsp31739A1739TGcgAcg11B.1.4280.00102
ORF1ab/nsp31739A1739TGcgAcg11B.1.6270.00202
ORF1ab/nsp31739A1739TGcgAcg11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.