CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1739

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31739A1739AA2557AsyngcGgcT13793122990.8916847934-7936
ORF1ab/nsp31739A1739AA2557AsyngcGgcA1379311140.08076567934-7936
ORF1ab/nsp31739A1739AA2557AsyngcGgcC137933800.02755027934-7936
ORF1ab/nsp31739A1739VA2557VnonsyngCggTg2772740.989177934-7936
ORF1ab/nsp31739A1739VA2557VnonsyngCGgTA27730.01083037934-7936
ORF1ab/nsp31739A1739TA2557TnonsynGcgAcg1741720.9885067934-7936
ORF1ab/nsp31739A1739TA2557TnonsynGcGAcA17420.01149437934-7936
ORF1ab/nsp31739A1739delA2557deldelGCG---12512517934-7936
ORF1ab/nsp31739A1739SA2557SnonsynGcgTcg97960.9896917934-7936
ORF1ab/nsp31739A1739SA2557SnonsynGcGTcA9710.01030937934-7936
ORF1ab/nsp31739A1739GA2557GnonsyngCggGg42410.976197934-7936
ORF1ab/nsp31739A1739GA2557GnonsyngCGgGA4210.02380957934-7936
ORF1ab/nsp31739A1739EA2557EnonsyngCggAg101017934-7936
ORF1ab/nsp31739A1739del1A2557del1delgcGgc-760.8571437934-7936
ORF1ab/nsp31739A1739del1A2557del1delgCgg-g710.1428577934-7936
ORF1ab/nsp31739A1739PA2557PnonsynGcgCcg430.757934-7936
ORF1ab/nsp31739A1739PA2557PnonsynGcGCcT410.257934-7936
ORF1ab/nsp31739A1739DA2557DnonsyngCGgAT2217934-7936
ORF1ab/nsp31739A1739RA2557RnonsynGCgAGg210.57934-7936
ORF1ab/nsp31739A1739RA2557RnonsynGCGAGA210.57934-7936
ORF1ab/nsp31739A1739LA2557LnonsynGCgCTg1117934-7936
ORF1ab/nsp31739A1739QA2557QnonsynGCgCAg1117934-7936

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31739A1739AgcGgcT1229913793All0.002352
ORF1ab/nsp31739A1739AgcGgcA111413793All0.000213
ORF1ab/nsp31739A1739AgcGgcC38013793All0.000073
ORF1ab/nsp31739A1739AgcGgcT27742848B.1.617.20.010445
ORF1ab/nsp31739A1739AgcGgcA492848B.1.617.20.000185
ORF1ab/nsp31739A1739AgcGgcC252848B.1.617.20.000094
ORF1ab/nsp31739A1739AgcGgcT27972797AY.410.822163
ORF1ab/nsp31739A1739AgcGgcT14371491AY.1030.008922
ORF1ab/nsp31739A1739AgcGgcA441491AY.1030.000273
ORF1ab/nsp31739A1739AgcGgcC101491AY.1030.000062
ORF1ab/nsp31739A1739AgcGgcT6501058B.1.1.70.000582
ORF1ab/nsp31739A1739AgcGgcA3391058B.1.1.70.000303
ORF1ab/nsp31739A1739AgcGgcC691058B.1.1.70.000062
ORF1ab/nsp31739A1739AgcGgcT350423AY.40.000545
ORF1ab/nsp31739A1739AgcGgcA40423AY.40.000062
ORF1ab/nsp31739A1739AgcGgcC33423AY.40.000051
ORF1ab/nsp31739A1739AgcGgcT370374AY.420.014885
ORF1ab/nsp31739A1739AgcGgcC3374AY.420.000121
ORF1ab/nsp31739A1739AgcGgcA1374AY.420.00004
ORF1ab/nsp31739A1739AgcGgcT194341B.1.20.001708
ORF1ab/nsp31739A1739AgcGgcA141341B.1.20.001242
ORF1ab/nsp31739A1739AgcGgcC6341B.1.20.000053
ORF1ab/nsp31739A1739AgcGgcT339340B.1.2650.43075
ORF1ab/nsp31739A1739AgcGgcC1340B.1.2650.001271
ORF1ab/nsp31739A1739AgcGgcT271293AY.430.001201
ORF1ab/nsp31739A1739AgcGgcA16293AY.430.000071
ORF1ab/nsp31739A1739AgcGgcC6293AY.430.000027
ORF1ab/nsp31739A1739VgCggTg274277All0.000052
ORF1ab/nsp31739A1739VgCGgTA3277All0.000001
ORF1ab/nsp31739A1739AgcGgcT245253P.10.00386
ORF1ab/nsp31739A1739AgcGgcA7253P.10.00011
ORF1ab/nsp31739A1739AgcGgcC1253P.10.000016
ORF1ab/nsp31739A1739AgcGgcT217218AY.330.014491
ORF1ab/nsp31739A1739AgcGgcA1218AY.330.000067
ORF1ab/nsp31739A1739AgcGgcT169180AY.1020.004481
ORF1ab/nsp31739A1739AgcGgcA7180AY.1020.000186
ORF1ab/nsp31739A1739AgcGgcC4180AY.1020.000106
ORF1ab/nsp31739A1739TGcgAcg172174All0.000033
ORF1ab/nsp31739A1739TGcGAcA2174All0
ORF1ab/nsp31739A1739AgcGgcT100152AY.390.002471
ORF1ab/nsp31739A1739AgcGgcA36152AY.390.00089
ORF1ab/nsp31739A1739AgcGgcC16152AY.390.000395
ORF1ab/nsp31739A1739AgcGgcT149149C.30.11
ORF1ab/nsp31739A1739AgcGgcT96130B.10.000879
ORF1ab/nsp31739A1739AgcGgcA32130B.10.000293
ORF1ab/nsp31739A1739AgcGgcC2130B.10.000018
ORF1ab/nsp31739A1739delGCG---125125All0.000024
ORF1ab/nsp31739A1739AgcGgcT86120AY.440.000523
ORF1ab/nsp31739A1739AgcGgcA28120AY.440.00017
ORF1ab/nsp31739A1739AgcGgcC6120AY.440.000037
ORF1ab/nsp31739A1739AgcGgcT114119R.10.010261
ORF1ab/nsp31739A1739AgcGgcC5119R.10.00045
ORF1ab/nsp31739A1739AgcGgcT74112AY.250.000445
ORF1ab/nsp31739A1739AgcGgcC33112AY.250.000198
ORF1ab/nsp31739A1739AgcGgcA5112AY.250.00003
ORF1ab/nsp31739A1739AgcGgcT9898B.1.1.4200.098592
ORF1ab/nsp31739A1739SGcgTcg9697All0.000018
ORF1ab/nsp31739A1739SGcGTcA197All0
ORF1ab/nsp31739A1739AgcGgcT8588AY.9.10.007117
ORF1ab/nsp31739A1739AgcGgcC388AY.9.10.000251
ORF1ab/nsp31739A1739AgcGgcC7379AY.710.034679
ORF1ab/nsp31739A1739AgcGgcT679AY.710.00285
ORF1ab/nsp31739A1739AgcGgcA7575B.1.4230.765306
ORF1ab/nsp31739A1739AgcGgcT4274B.1.10.000762
ORF1ab/nsp31739A1739AgcGgcA2974B.1.10.000526
ORF1ab/nsp31739A1739AgcGgcC374B.1.10.000054
ORF1ab/nsp31739A1739SGcgTcg6969AY.1030.000428
ORF1ab/nsp31739A1739AgcGgcT6767B.1.360.009775
ORF1ab/nsp31739A1739AgcGgcT5066AY.30.000497
ORF1ab/nsp31739A1739AgcGgcA1366AY.30.000129
ORF1ab/nsp31739A1739AgcGgcC366AY.30.00003
ORF1ab/nsp31739A1739AgcGgcT6666C.300.11399
ORF1ab/nsp31739A1739AgcGgcT4264B.1.1770.000553
ORF1ab/nsp31739A1739AgcGgcA2264B.1.1770.00029
ORF1ab/nsp31739A1739AgcGgcT6262AY.140.005457
ORF1ab/nsp31739A1739AgcGgcT6161AY.130.00982
ORF1ab/nsp31739A1739TGcgAcg6060AY.1030.000373
ORF1ab/nsp31739A1739VgCggTg5656AY.40.000087
ORF1ab/nsp31739A1739AgcGgcT5555B.1.1600.001715
ORF1ab/nsp31739A1739VgCggTg5252AY.250.000313
ORF1ab/nsp31739A1739delGCG---4848B.1.1.70.000043
ORF1ab/nsp31739A1739GgCggGg4142All0.000008
ORF1ab/nsp31739A1739GgCGgGA142All0
ORF1ab/nsp31739A1739AgcGgcA4041B.1.1.10.013068
ORF1ab/nsp31739A1739AgcGgcT141B.1.1.10.000327
ORF1ab/nsp31739A1739AgcGgcT3940B.1.4290.000918
ORF1ab/nsp31739A1739AgcGgcA140B.1.4290.000024
ORF1ab/nsp31739A1739AgcGgcT3839AY.460.003955
ORF1ab/nsp31739A1739AgcGgcA139AY.460.000104
ORF1ab/nsp31739A1739GgCggGg3838B.1.1.70.000034
ORF1ab/nsp31739A1739VgCggTg3334B.1.1.70.00003
ORF1ab/nsp31739A1739VgCGgTA134B.1.1.70.000001
ORF1ab/nsp31739A1739AgcGgcT3034B.1.3510.000892
ORF1ab/nsp31739A1739AgcGgcA334B.1.3510.000089
ORF1ab/nsp31739A1739AgcGgcC134B.1.3510.00003
ORF1ab/nsp31739A1739AgcGgcT3233B.1.1.2220.006528
ORF1ab/nsp31739A1739AgcGgcC133B.1.1.2220.000204
ORF1ab/nsp31739A1739AgcGgcT3333B.1.6120.087533
ORF1ab/nsp31739A1739AgcGgcA2931AY.10.011476
ORF1ab/nsp31739A1739AgcGgcT231AY.10.000791
ORF1ab/nsp31739A1739AgcGgcT2531AY.200.000972
ORF1ab/nsp31739A1739AgcGgcA431AY.200.000155
ORF1ab/nsp31739A1739AgcGgcC231AY.200.000078
ORF1ab/nsp31739A1739AgcGgcT2929AY.120.10.00931
ORF1ab/nsp31739A1739AgcGgcT2929AY.75.10.005229
ORF1ab/nsp31739A1739AgcGgcT2829B.1.5260.000658
ORF1ab/nsp31739A1739AgcGgcC129B.1.5260.000024
ORF1ab/nsp31739A1739AgcGgcT2727B.1.177.491
ORF1ab/nsp31739A1739AgcGgcT2626AY.9.20.000955
ORF1ab/nsp31739A1739AgcGgcA1724AY.230.001186
ORF1ab/nsp31739A1739AgcGgcT524AY.230.000349
ORF1ab/nsp31739A1739AgcGgcC224AY.230.000139
ORF1ab/nsp31739A1739AgcGgcT1823AY.290.000284
ORF1ab/nsp31739A1739AgcGgcA423AY.290.000063
ORF1ab/nsp31739A1739AgcGgcC123AY.290.000016
ORF1ab/nsp31739A1739AgcGgcT2323AY.46.60.001661
ORF1ab/nsp31739A1739AgcGgcT2022AY.3.10.001705
ORF1ab/nsp31739A1739AgcGgcA122AY.3.10.000085
ORF1ab/nsp31739A1739AgcGgcC122AY.3.10.000085
ORF1ab/nsp31739A1739AgcGgcT2122B.1.1.5190.000834
ORF1ab/nsp31739A1739AgcGgcA122B.1.1.5190.00004
ORF1ab/nsp31739A1739TGcgAcg2222B.1.1.70.00002
ORF1ab/nsp31739A1739AgcGgcT1221B.1.2210.000852
ORF1ab/nsp31739A1739AgcGgcA921B.1.2210.000639
ORF1ab/nsp31739A1739AgcGgcT2121B.1.5950.00548
ORF1ab/nsp31739A1739AgcGgcT1920AY.1210.002571
ORF1ab/nsp31739A1739AgcGgcC120AY.1210.000135
ORF1ab/nsp31739A1739AgcGgcT1520AY.260.000425
ORF1ab/nsp31739A1739AgcGgcA320AY.260.000085
ORF1ab/nsp31739A1739AgcGgcC220AY.260.000057
ORF1ab/nsp31739A1739TGcgAcg2020AY.40.000031
ORF1ab/nsp31739A1739AgcGgcT1920AY.450.002312
ORF1ab/nsp31739A1739AgcGgcA120AY.450.000122
ORF1ab/nsp31739A1739AgcGgcT2020B.1.3820.178571
ORF1ab/nsp31739A1739AgcGgcT1919AE.80.009291
ORF1ab/nsp31739A1739TGcgAcg1919AY.440.000116
ORF1ab/nsp31739A1739AgcGgcT1318AY.1190.000459
ORF1ab/nsp31739A1739AgcGgcC318AY.1190.000106
ORF1ab/nsp31739A1739AgcGgcA218AY.1190.000071
ORF1ab/nsp31739A1739AgcGgcT1818AY.50.000372
ORF1ab/nsp31739A1739VgCggTg1818B.1.617.20.000068
ORF1ab/nsp31739A1739AgcGgcT1517AY.98.10.000726
ORF1ab/nsp31739A1739AgcGgcA217AY.98.10.000097
ORF1ab/nsp31739A1739AgcGgcC1717B.1.1.890.10303
ORF1ab/nsp31739A1739AgcGgcT1416AY.1000.000644
ORF1ab/nsp31739A1739AgcGgcA216AY.1000.000092
ORF1ab/nsp31739A1739AgcGgcT1216AY.470.000373
ORF1ab/nsp31739A1739AgcGgcA316AY.470.000093
ORF1ab/nsp31739A1739AgcGgcC116AY.470.000031
ORF1ab/nsp31739A1739AgcGgcT1016AY.610.001048
ORF1ab/nsp31739A1739AgcGgcA616AY.610.000629
ORF1ab/nsp31739A1739AgcGgcT1616B.1.258.140.015686
ORF1ab/nsp31739A1739VgCggTg1515AY.390.000371
ORF1ab/nsp31739A1739AgcGgcT1515B.1.1.330.006313
ORF1ab/nsp31739A1739AgcGgcT1515B.1.3690.004278
ORF1ab/nsp31739A1739AgcGgcT1014AY.670.004643
ORF1ab/nsp31739A1739AgcGgcC414AY.670.001857
ORF1ab/nsp31739A1739AgcGgcT1113AY.680.003011
ORF1ab/nsp31739A1739AgcGgcC213AY.680.000547
ORF1ab/nsp31739A1739AgcGgcT1212P.1.10.003812
ORF1ab/nsp31739A1739AgcGgcT611AY.1200.000223
ORF1ab/nsp31739A1739AgcGgcA511AY.1200.000186
ORF1ab/nsp31739A1739VgCggTg1111AY.440.000067
ORF1ab/nsp31739A1739AgcGgcT911AY.60.00037
ORF1ab/nsp31739A1739AgcGgcC111AY.60.000041
ORF1ab/nsp31739A1739AgcGgcA111AY.60.000041
ORF1ab/nsp31739A1739AgcGgcT1011AY.980.00079
ORF1ab/nsp31739A1739AgcGgcA111AY.980.000079
ORF1ab/nsp31739A1739AgcGgcT1011B.1.617.10.00129
ORF1ab/nsp31739A1739AgcGgcC111B.1.617.10.000129
ORF1ab/nsp31739A1739AgcGgcA611B.1.6370.000438
ORF1ab/nsp31739A1739AgcGgcT511B.1.6370.000365
ORF1ab/nsp31739A1739AgcGgcT1111C.370.001277
ORF1ab/nsp31739A1739EgCggAg1010All0.000002
ORF1ab/nsp31739A1739AgcGgcT1010B.1.4060.060606
ORF1ab/nsp31739A1739AgcGgcT810P.20.001493
ORF1ab/nsp31739A1739AgcGgcA210P.20.000373
ORF1ab/nsp31739A1739VgCggTg99AY.1030.000056
ORF1ab/nsp31739A1739TGcgAcg99AY.250.000054
ORF1ab/nsp31739A1739AgcGgcT89AY.39.10.000317
ORF1ab/nsp31739A1739AgcGgcC19AY.39.10.00004
ORF1ab/nsp31739A1739delGCG---99AY.40.000014
ORF1ab/nsp31739A1739VgCggTg99AY.430.00004
ORF1ab/nsp31739A1739AgcGgcT69AY.99.20.000553
ORF1ab/nsp31739A1739AgcGgcA39AY.99.20.000276
ORF1ab/nsp31739A1739VgCggTg99B.1.1.3070.022785
ORF1ab/nsp31739A1739AgcGgcT89B.1.1.3170.003294
ORF1ab/nsp31739A1739AgcGgcA19B.1.1.3170.000412
ORF1ab/nsp31739A1739AgcGgcT99B.1.1.3580.310345
ORF1ab/nsp31739A1739SGcgTcg99B.1.1.70.000008
ORF1ab/nsp31739A1739AgcGgcC99B.1.4861
ORF1ab/nsp31739A1739AgcGgcT88AY.1110.001465
ORF1ab/nsp31739A1739TGcgAcg88AY.290.000126
ORF1ab/nsp31739A1739AgcGgcT88AY.340.000776
ORF1ab/nsp31739A1739AgcGgcT78B.1.4270.000353
ORF1ab/nsp31739A1739AgcGgcA18B.1.4270.00005
ORF1ab/nsp31739A1739AgcGgcA78B.1.5960.00061
ORF1ab/nsp31739A1739AgcGgcT18B.1.5960.000087
ORF1ab/nsp31739A1739AgcGgcT58P.1.140.000239
ORF1ab/nsp31739A1739AgcGgcA38P.1.140.000143
ORF1ab/nsp31739A1739AgcGgcT88Q.30.00116
ORF1ab/nsp31739A1739del1gcGgc-67All0.000001
ORF1ab/nsp31739A1739del1gCgg-g17All0
ORF1ab/nsp31739A1739AgcGgcT77AY.5.40.001937
ORF1ab/nsp31739A1739AgcGgcT77AY.7.10.000789
ORF1ab/nsp31739A1739AgcGgcT67AY.750.000336
ORF1ab/nsp31739A1739AgcGgcA17AY.750.000056
ORF1ab/nsp31739A1739AgcGgcT77B.1.2430.000487
ORF1ab/nsp31739A1739AgcGgcT77B.1.36.290.003621
ORF1ab/nsp31739A1739AgcGgcT77B.1.6090.003356
ORF1ab/nsp31739A1739delGCG---77B.1.617.20.000026
ORF1ab/nsp31739A1739AgcGgcT57B.1.6210.000443
ORF1ab/nsp31739A1739AgcGgcC17B.1.6210.000089
ORF1ab/nsp31739A1739AgcGgcA17B.1.6210.000089
ORF1ab/nsp31739A1739AgcGgcT56AY.1180.000313
ORF1ab/nsp31739A1739AgcGgcA16AY.1180.000063
ORF1ab/nsp31739A1739AgcGgcA46AY.20.001425
ORF1ab/nsp31739A1739AgcGgcT26AY.20.000712
ORF1ab/nsp31739A1739AgcGgcC56AY.380.002496
ORF1ab/nsp31739A1739AgcGgcT16AY.380.000499
ORF1ab/nsp31739A1739AgcGgcT46AY.4.20.000087
ORF1ab/nsp31739A1739AgcGgcA26AY.4.20.000043
ORF1ab/nsp31739A1739AgcGgcT66B.1.177.520.010545
ORF1ab/nsp31739A1739AgcGgcT66B.1.2320.003224
ORF1ab/nsp31739A1739AgcGgcA550.277778
ORF1ab/nsp31739A1739AgcGgcT55A.30.010482
ORF1ab/nsp31739A1739AgcGgcT55AY.1130.000712
ORF1ab/nsp31739A1739AgcGgcT55AY.220.01046
ORF1ab/nsp31739A1739AgcGgcT45AY.5.30.00135
ORF1ab/nsp31739A1739AgcGgcC15AY.5.30.000337
ORF1ab/nsp31739A1739AgcGgcT55AY.510.004545
ORF1ab/nsp31739A1739AgcGgcT55AY.770.005637
ORF1ab/nsp31739A1739AgcGgcT55AY.920.001436
ORF1ab/nsp31739A1739AgcGgcC35B.1.1.280.000934
ORF1ab/nsp31739A1739AgcGgcT25B.1.1.280.000622
ORF1ab/nsp31739A1739AgcGgcC35B.1.36.80.003
ORF1ab/nsp31739A1739AgcGgcT25B.1.36.80.002
ORF1ab/nsp31739A1739AgcGgcT55P.1.170.000809
ORF1ab/nsp31739A1739delGCG---440.222222
ORF1ab/nsp31739A1739PGcgCcg34All0.000001
ORF1ab/nsp31739A1739PGcGCcT14All0
ORF1ab/nsp31739A1739AgcGgcT44AY.1060.00134
ORF1ab/nsp31739A1739VgCggTg44AY.200.000155
ORF1ab/nsp31739A1739TGcgAcg44AY.200.000155
ORF1ab/nsp31739A1739VgCggTg44AY.3.10.000341
ORF1ab/nsp31739A1739AgcGgcT24AY.360.000296
ORF1ab/nsp31739A1739AgcGgcA14AY.360.000148
ORF1ab/nsp31739A1739AgcGgcC14AY.360.000148
ORF1ab/nsp31739A1739SGcgTcg44AY.40.000006
ORF1ab/nsp31739A1739AgcGgcT44AY.540.000381
ORF1ab/nsp31739A1739AgcGgcT44AY.620.001743
ORF1ab/nsp31739A1739AgcGgcA34AY.740.000347
ORF1ab/nsp31739A1739AgcGgcT14AY.740.000116
ORF1ab/nsp31739A1739AgcGgcT44AY.840.00175
ORF1ab/nsp31739A1739AgcGgcT44AZ.30.006079
ORF1ab/nsp31739A1739delGCG---44B.10.000037
ORF1ab/nsp31739A1739AgcGgcT34B.1.1.2140.000166
ORF1ab/nsp31739A1739AgcGgcC14B.1.1.2140.000055
ORF1ab/nsp31739A1739AgcGgcT44B.1.1.2310.012384
ORF1ab/nsp31739A1739AgcGgcT24B.1.1.2980.001724
ORF1ab/nsp31739A1739AgcGgcA24B.1.1.2980.001724
ORF1ab/nsp31739A1739AgcGgcA34B.1.1.390.001529
ORF1ab/nsp31739A1739AgcGgcT14B.1.1.390.00051
ORF1ab/nsp31739A1739AgcGgcT44B.1.1470.003023
ORF1ab/nsp31739A1739delGCG---44B.1.1770.000053
ORF1ab/nsp31739A1739AgcGgcT44B.1.177.310.045977
ORF1ab/nsp31739A1739AgcGgcT44B.1.177.40.000844
ORF1ab/nsp31739A1739AgcGgcT44B.1.2220.006768
ORF1ab/nsp31739A1739AgcGgcT44B.1.2400.000862
ORF1ab/nsp31739A1739AgcGgcT44B.1.2410.003247
ORF1ab/nsp31739A1739AgcGgcT44B.1.2580.000266
ORF1ab/nsp31739A1739AgcGgcT44B.1.3910.00451
ORF1ab/nsp31739A1739AgcGgcT44Q.10.000505
ORF1ab/nsp31739A1739AgcGgcT44Q.40.001819
ORF1ab/nsp31739A1739AgcGgcA33A.20.001985
ORF1ab/nsp31739A1739AgcGgcT33A.270.004967
ORF1ab/nsp31739A1739AgcGgcT23AD.20.000438
ORF1ab/nsp31739A1739AgcGgcC13AD.20.000219
ORF1ab/nsp31739A1739VgCggTg33AY.1000.000138
ORF1ab/nsp31739A1739AgcGgcT33AY.160.001139
ORF1ab/nsp31739A1739AgcGgcT33AY.240.001293
ORF1ab/nsp31739A1739VgCggTg33AY.260.000085
ORF1ab/nsp31739A1739AgcGgcT33AY.300.001187
ORF1ab/nsp31739A1739AgcGgcT33AY.310.055556
ORF1ab/nsp31739A1739AgcGgcT33AY.320.001597
ORF1ab/nsp31739A1739AgcGgcT23AY.350.000466
ORF1ab/nsp31739A1739AgcGgcA13AY.350.000233
ORF1ab/nsp31739A1739delGCG---33AY.4.50.000322
ORF1ab/nsp31739A1739TGcgAcg33AY.430.000013
ORF1ab/nsp31739A1739delGCG---33AY.430.000013
ORF1ab/nsp31739A1739VgCggTg33AY.50.000062
ORF1ab/nsp31739A1739TGcgAcg33AY.9.20.00011
ORF1ab/nsp31739A1739VgCggTg33AY.9.20.00011
ORF1ab/nsp31739A1739AgcGgcT33AY.950.002283
ORF1ab/nsp31739A1739AgcGgcT33B0.000383
ORF1ab/nsp31739A1739VgCggTg33B.10.000027
ORF1ab/nsp31739A1739TGcgAcg33B.1.10.000054
ORF1ab/nsp31739A1739VgCggTg33B.1.10.000054
ORF1ab/nsp31739A1739AgcGgcC23B.1.1.250.001137
ORF1ab/nsp31739A1739AgcGgcT13B.1.1.250.000569
ORF1ab/nsp31739A1739AgcGgcT33B.1.1.3060.001315
ORF1ab/nsp31739A1739AgcGgcT33B.1.1.4630.1875
ORF1ab/nsp31739A1739AgcGgcT33B.1.110.30.002155
ORF1ab/nsp31739A1739TGcgAcg33B.1.177.210.000229
ORF1ab/nsp31739A1739AgcGgcT33B.1.177.350.002073
ORF1ab/nsp31739A1739AgcGgcA33B.1.177.570.000843
ORF1ab/nsp31739A1739TGcgAcg33B.1.177.790.007026
ORF1ab/nsp31739A1739AgcGgcA33B.1.214.30.021429
ORF1ab/nsp31739A1739AgcGgcT33B.1.3200.003736
ORF1ab/nsp31739A1739AgcGgcT33B.1.3360.007317
ORF1ab/nsp31739A1739VgCggTg33B.1.4290.000071
ORF1ab/nsp31739A1739AgcGgcT33B.1.5250.000339
ORF1ab/nsp31739A1739TGcgAcg33B.1.617.20.000011
ORF1ab/nsp31739A1739RGCgAGg120.055556
ORF1ab/nsp31739A1739GgCGgGA120.055556
ORF1ab/nsp31739A1739RGCGAGA120.055556
ORF1ab/nsp31739A1739TGcGAcA120.055556
ORF1ab/nsp31739A1739GgCggGg120.055556
ORF1ab/nsp31739A1739TGcgAcg120.055556
ORF1ab/nsp31739A1739AgcGgcT12A.2.5.20.001572
ORF1ab/nsp31739A1739AgcGgcA12A.2.5.20.001572
ORF1ab/nsp31739A1739AgcGgcT22A.23.10.001408
ORF1ab/nsp31739A1739DgCGgAT22All0
ORF1ab/nsp31739A1739RGCGAGA12All0
ORF1ab/nsp31739A1739RGCgAGg12All0
ORF1ab/nsp31739A1739AgcGgcT22AY.1160.000574
ORF1ab/nsp31739A1739AgcGgcA22AY.116.10.000623
ORF1ab/nsp31739A1739AgcGgcT22AY.1170.000169
ORF1ab/nsp31739A1739AgcGgcA12AY.16.10.00047
ORF1ab/nsp31739A1739AgcGgcT12AY.16.10.00047
ORF1ab/nsp31739A1739AgcGgcT12AY.190.00114
ORF1ab/nsp31739A1739AgcGgcA12AY.190.00114
ORF1ab/nsp31739A1739AgcGgcT12AY.29.10.000221
ORF1ab/nsp31739A1739AgcGgcA12AY.29.10.000221
ORF1ab/nsp31739A1739VgCggTg22AY.30.00002
ORF1ab/nsp31739A1739SGcgTcg22AY.39.10.000079
ORF1ab/nsp31739A1739VgCggTg22AY.4.2.10.000298
ORF1ab/nsp31739A1739VgCggTg22AY.4.50.000215
ORF1ab/nsp31739A1739delGCG---22AY.46.20.001271
ORF1ab/nsp31739A1739AgcGgcT22AY.46.20.001271
ORF1ab/nsp31739A1739AgcGgcT22AY.520.001629
ORF1ab/nsp31739A1739AgcGgcT22AY.550.001835
ORF1ab/nsp31739A1739AgcGgcT22AY.580.001815
ORF1ab/nsp31739A1739AgcGgcT22AY.700.000417
ORF1ab/nsp31739A1739AgcGgcT12AY.90.000068
ORF1ab/nsp31739A1739AgcGgcC12AY.90.000068
ORF1ab/nsp31739A1739SGcgTcg22AY.980.000158
ORF1ab/nsp31739A1739VgCggTg22AY.98.10.000097
ORF1ab/nsp31739A1739AgcGgcA22AY.990.002099
ORF1ab/nsp31739A1739AgcGgcC12B.1.1.2160.00089
ORF1ab/nsp31739A1739AgcGgcA12B.1.1.2160.00089
ORF1ab/nsp31739A1739delGCG---22B.1.1.2360.013793
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.2580.006515
ORF1ab/nsp31739A1739AgcGgcA22B.1.1.2880.003831
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3150.016949
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3180.000604
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3680.006173
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.3690.000892
ORF1ab/nsp31739A1739AgcGgcA12B.1.1.3720.000689
ORF1ab/nsp31739A1739AgcGgcT12B.1.1.3720.000689
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.4240.090909
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.4320.002532
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.4340.000697
ORF1ab/nsp31739A1739AgcGgcT22B.1.1.670.009132
ORF1ab/nsp31739A1739del1gcGgc-22B.1.1.70.000002
ORF1ab/nsp31739A1739AgcGgcT22B.1.1310.017544
ORF1ab/nsp31739A1739VgCggTg12B.1.1770.000013
ORF1ab/nsp31739A1739VgCGgTA12B.1.1770.000013
ORF1ab/nsp31739A1739AgcGgcT22B.1.177.170.001642
ORF1ab/nsp31739A1739delGCG---22B.1.177.40.000422
ORF1ab/nsp31739A1739AgcGgcT22B.1.177.540.001213
ORF1ab/nsp31739A1739VgCggTg22B.1.20.000018
ORF1ab/nsp31739A1739TGcgAcg22B.1.20.000018
ORF1ab/nsp31739A1739AgcGgcT22B.1.220.002635
ORF1ab/nsp31739A1739AgcGgcT22B.1.258.170.000208
ORF1ab/nsp31739A1739AgcGgcT22B.1.3020.026667
ORF1ab/nsp31739A1739AgcGgcT12B.1.351.20.000303
ORF1ab/nsp31739A1739AgcGgcA12B.1.351.20.000303
ORF1ab/nsp31739A1739delGCG---22B.1.36.170.000988
ORF1ab/nsp31739A1739AgcGgcT22B.1.3990.003868
ORF1ab/nsp31739A1739AgcGgcT22B.1.438.10.000215
ORF1ab/nsp31739A1739AgcGgcT22B.1.4620.014493
ORF1ab/nsp31739A1739AgcGgcA22B.1.5480.071429
ORF1ab/nsp31739A1739AgcGgcA22B.1.6280.000705
ORF1ab/nsp31739A1739VgCggTg22B.1.6370.000146
ORF1ab/nsp31739A1739AgcGgcT22C.10.004785
ORF1ab/nsp31739A1739AgcGgcA12C.360.000911
ORF1ab/nsp31739A1739AgcGgcT12C.360.000911
ORF1ab/nsp31739A1739AgcGgcT22C.390.037736
ORF1ab/nsp31739A1739AgcGgcT22N.40.008511
ORF1ab/nsp31739A1739VgCggTg22P.10.000032
ORF1ab/nsp31739A1739AgcGgcT22P.1.120.000968
ORF1ab/nsp31739A1739AgcGgcC22P.1.150.000465
ORF1ab/nsp31739A1739AgcGgcT22P.1.70.000639
ORF1ab/nsp31739A1739AgcGgcA12P.30.001595
ORF1ab/nsp31739A1739AgcGgcT12P.30.001595
ORF1ab/nsp31739A1739AgcGgcT12P.60.003145
ORF1ab/nsp31739A1739AgcGgcC12P.60.003145
ORF1ab/nsp31739A1739SGcgTcg22Q.10.000253
ORF1ab/nsp31739A1739AgcGgcT22Q.20.001227
ORF1ab/nsp31739A1739GgCggGg22Q.80.00033
ORF1ab/nsp31739A1739AgcGgcT22Q.80.00033
ORF1ab/nsp31739A1739EgCggAg110.055556
ORF1ab/nsp31739A1739delGCG---11A0.000387
ORF1ab/nsp31739A1739AgcGgcA11A0.000387
ORF1ab/nsp31739A1739AgcGgcT11A.2.50.000499
ORF1ab/nsp31739A1739LGCgCTg11All0
ORF1ab/nsp31739A1739QGCgCAg11All0
ORF1ab/nsp31739A1739AgcGgcT11AY.100.00053
ORF1ab/nsp31739A1739del1gcGgc-11AY.1000.000046
ORF1ab/nsp31739A1739TGcgAcg11AY.1000.000046
ORF1ab/nsp31739A1739VgCggTg11AY.1020.000027
ORF1ab/nsp31739A1739TGcgAcg11AY.1020.000027
ORF1ab/nsp31739A1739AgcGgcT11AY.1050.000643
ORF1ab/nsp31739A1739TGcgAcg11AY.1070.000466
ORF1ab/nsp31739A1739AgcGgcT11AY.1070.000466
ORF1ab/nsp31739A1739AgcGgcT11AY.1080.001103
ORF1ab/nsp31739A1739VgCggTg11AY.1100.000113
ORF1ab/nsp31739A1739delGCG---11AY.1110.000183
ORF1ab/nsp31739A1739VgCggTg11AY.1130.000142
ORF1ab/nsp31739A1739AgcGgcA11AY.1140.000231
ORF1ab/nsp31739A1739delGCG---11AY.1180.000063
ORF1ab/nsp31739A1739AgcGgcT11AY.120.000316
ORF1ab/nsp31739A1739delGCG---11AY.1200.000037
ORF1ab/nsp31739A1739VgCggTg11AY.120.10.000321
ORF1ab/nsp31739A1739AgcGgcA11AY.120.20.001285
ORF1ab/nsp31739A1739delGCG---11AY.190.00114
ORF1ab/nsp31739A1739AgcGgcC11AY.23.10.000417
ORF1ab/nsp31739A1739delGCG---11AY.250.000006
ORF1ab/nsp31739A1739SGcgTcg11AY.250.000006
ORF1ab/nsp31739A1739AgcGgcT11AY.270.000065
ORF1ab/nsp31739A1739VgCggTg11AY.270.000065
ORF1ab/nsp31739A1739AgcGgcT11AY.280.00189
ORF1ab/nsp31739A1739delGCG---11AY.330.000067
ORF1ab/nsp31739A1739VgCggTg11AY.360.000148
ORF1ab/nsp31739A1739EgCggAg11AY.4.20.000022
ORF1ab/nsp31739A1739AgcGgcC11AY.4.2.10.000149
ORF1ab/nsp31739A1739AgcGgcT11AY.4.30.000842
ORF1ab/nsp31739A1739AgcGgcT11AY.4.40.000409
ORF1ab/nsp31739A1739AgcGgcT11AY.4.50.000107
ORF1ab/nsp31739A1739del1gCgg-g11AY.420.00004
ORF1ab/nsp31739A1739DgCGgAT11AY.430.000004
ORF1ab/nsp31739A1739delGCG---11AY.440.000006
ORF1ab/nsp31739A1739DgCGgAT11AY.440.000006
ORF1ab/nsp31739A1739LGCgCTg11AY.440.000006
ORF1ab/nsp31739A1739VgCggTg11AY.450.000122
ORF1ab/nsp31739A1739AgcGgcT11AY.46.10.001027
ORF1ab/nsp31739A1739AgcGgcT11AY.46.50.000198
ORF1ab/nsp31739A1739AgcGgcA11AY.480.000465
ORF1ab/nsp31739A1739PGcgCcg11AY.50.000021
ORF1ab/nsp31739A1739delGCG---11AY.50.000021
ORF1ab/nsp31739A1739AgcGgcT11AY.500.000799
ORF1ab/nsp31739A1739AgcGgcT11AY.570.000656
ORF1ab/nsp31739A1739AgcGgcT11AY.590.00053
ORF1ab/nsp31739A1739VgCggTg11AY.60.000041
ORF1ab/nsp31739A1739delGCG---11AY.60.000041
ORF1ab/nsp31739A1739AgcGgcT11AY.630.000387
ORF1ab/nsp31739A1739AgcGgcT11AY.640.000595
ORF1ab/nsp31739A1739delGCG---11AY.660.00107
ORF1ab/nsp31739A1739AgcGgcT11AY.70.000196
ORF1ab/nsp31739A1739SGcgTcg11AY.750.000056
ORF1ab/nsp31739A1739delGCG---11AY.750.000056
ORF1ab/nsp31739A1739TGcgAcg11AY.790.001211
ORF1ab/nsp31739A1739VgCggTg11AY.790.001211
ORF1ab/nsp31739A1739AgcGgcT11AY.790.001211
ORF1ab/nsp31739A1739AgcGgcT11AY.820.001357
ORF1ab/nsp31739A1739delGCG---11AY.840.000437
ORF1ab/nsp31739A1739AgcGgcT11AY.860.00083
ORF1ab/nsp31739A1739AgcGgcT11AY.870.000833
ORF1ab/nsp31739A1739AgcGgcT11AY.880.000884
ORF1ab/nsp31739A1739AgcGgcT11AY.890.004902
ORF1ab/nsp31739A1739delGCG---11AY.9.20.000037
ORF1ab/nsp31739A1739AgcGgcT11AY.910.00073
ORF1ab/nsp31739A1739AgcGgcT11AY.930.000273
ORF1ab/nsp31739A1739AgcGgcT11AY.960.002075
ORF1ab/nsp31739A1739delGCG---11AY.990.001049
ORF1ab/nsp31739A1739delGCG---11AY.99.10.001553
ORF1ab/nsp31739A1739VgCggTg11AY.99.20.000092
ORF1ab/nsp31739A1739PGcgCcg11B.10.000009
ORF1ab/nsp31739A1739SGcgTcg11B.10.000009
ORF1ab/nsp31739A1739EgCggAg11B.10.000009
ORF1ab/nsp31739A1739del1gcGgc-11B.10.000009
ORF1ab/nsp31739A1739PGcGCcT11B.1.10.000018
ORF1ab/nsp31739A1739del1gcGgc-11B.1.10.000018
ORF1ab/nsp31739A1739delGCG---11B.1.10.000018
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1530.001095
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1720.018182
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1920.002309
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.1940.00495
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.2050.003717
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.2170.003636
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2190.005
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2260.005814
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2410.00207
ORF1ab/nsp31739A1739AgcGgcC11B.1.1.2840.000107
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.2850.006536
ORF1ab/nsp31739A1739EgCggAg11B.1.1.3720.000689
ORF1ab/nsp31739A1739TGcgAcg11B.1.1.3890.006061
ORF1ab/nsp31739A1739delGCG---11B.1.1.460.004367
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.500.000679
ORF1ab/nsp31739A1739VgCggTg11B.1.1.5260.003546
ORF1ab/nsp31739A1739QGCgCAg11B.1.1.70.000001
ORF1ab/nsp31739A1739AgcGgcT11B.1.1.700.000341
ORF1ab/nsp31739A1739AgcGgcA11B.1.1.830.00271
ORF1ab/nsp31739A1739AgcGgcT11B.1.1280.000635
ORF1ab/nsp31739A1739VgCggTg11B.1.130.002375
ORF1ab/nsp31739A1739AgcGgcA11B.1.1390.000733
ORF1ab/nsp31739A1739AgcGgcT11B.1.1570.002985
ORF1ab/nsp31739A1739EgCggAg11B.1.1570.002985
ORF1ab/nsp31739A1739EgCggAg11B.1.1600.000031
ORF1ab/nsp31739A1739delGCG---11B.1.160.70.002079
ORF1ab/nsp31739A1739SGcgTcg11B.1.1770.000013
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.100.000878
ORF1ab/nsp31739A1739VgCGgTA11B.1.177.150.000631
ORF1ab/nsp31739A1739delGCG---11B.1.177.160.000664
ORF1ab/nsp31739A1739delGCG---11B.1.177.210.000076
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.260.006993
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.320.00135
ORF1ab/nsp31739A1739delGCG---11B.1.177.540.000606
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.560.000668
ORF1ab/nsp31739A1739delGCG---11B.1.177.570.000281
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.580.001332
ORF1ab/nsp31739A1739delGCG---11B.1.177.60.000977
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.60.000977
ORF1ab/nsp31739A1739AgcGgcA11B.1.177.650.000665
ORF1ab/nsp31739A1739delGCG---11B.1.177.690.001484
ORF1ab/nsp31739A1739delGCG---11B.1.177.70.000165
ORF1ab/nsp31739A1739VgCggTg11B.1.177.70.000165
ORF1ab/nsp31739A1739TGcgAcg11B.1.177.810.000189
ORF1ab/nsp31739A1739AgcGgcT11B.1.177.810.000189
ORF1ab/nsp31739A1739delGCG---11B.1.177.830.001481
ORF1ab/nsp31739A1739AgcGgcT11B.1.214.20.0006
ORF1ab/nsp31739A1739SGcgTcg11B.1.2210.000071
ORF1ab/nsp31739A1739VgCggTg11B.1.221.30.000833
ORF1ab/nsp31739A1739AgcGgcT11B.1.2340.000132
ORF1ab/nsp31739A1739TGcGAcA11B.1.2580.000067
ORF1ab/nsp31739A1739delGCG---11B.1.2580.000067
ORF1ab/nsp31739A1739delGCG---11B.1.258.110.000396
ORF1ab/nsp31739A1739AgcGgcT11B.1.2600.003344
ORF1ab/nsp31739A1739AgcGgcT11B.1.2790.000514
ORF1ab/nsp31739A1739AgcGgcT11B.1.3110.000275
ORF1ab/nsp31739A1739AgcGgcT11B.1.351.30.000876
ORF1ab/nsp31739A1739AgcGgcT11B.1.351.50.0006
ORF1ab/nsp31739A1739del1gcGgc-11B.1.360.000146
ORF1ab/nsp31739A1739delGCG---11B.1.36.180.00042
ORF1ab/nsp31739A1739AgcGgcT11B.1.36.70.004
ORF1ab/nsp31739A1739AgcGgcT11B.1.3670.000792
ORF1ab/nsp31739A1739AgcGgcA11B.1.3700.008
ORF1ab/nsp31739A1739AgcGgcT11B.1.4000.000429
ORF1ab/nsp31739A1739EgCggAg11B.1.4040.001302
ORF1ab/nsp31739A1739delGCG---11B.1.4090.000781
ORF1ab/nsp31739A1739AgcGgcT11B.1.4110.003704
ORF1ab/nsp31739A1739AgcGgcT11B.1.4260.001009
ORF1ab/nsp31739A1739EgCggAg11B.1.4270.00005
ORF1ab/nsp31739A1739TGcgAcg11B.1.4280.00102
ORF1ab/nsp31739A1739SGcgTcg11B.1.4290.000024
ORF1ab/nsp31739A1739AgcGgcT11B.1.466.20.000391
ORF1ab/nsp31739A1739AgcGgcT11B.1.4680.005714
ORF1ab/nsp31739A1739AgcGgcT11B.1.4970.000315
ORF1ab/nsp31739A1739AgcGgcT11B.1.5020.052632
ORF1ab/nsp31739A1739AgcGgcT11B.1.5090.000866
ORF1ab/nsp31739A1739AgcGgcT11B.1.5380.008065
ORF1ab/nsp31739A1739AgcGgcT11B.1.5600.00463
ORF1ab/nsp31739A1739AgcGgcT11B.1.5610.000397
ORF1ab/nsp31739A1739PGcgCcg11B.1.5800.004065
ORF1ab/nsp31739A1739VgCggTg11B.1.5860.010989
ORF1ab/nsp31739A1739VgCggTg11B.1.5960.000087
ORF1ab/nsp31739A1739EgCggAg11B.1.5960.000087
ORF1ab/nsp31739A1739AgcGgcT11B.1.6030.010638
ORF1ab/nsp31739A1739EgCggAg11B.1.617.20.000004
ORF1ab/nsp31739A1739SGcgTcg11B.1.617.20.000004
ORF1ab/nsp31739A1739delGCG---11B.1.617.30.002985
ORF1ab/nsp31739A1739TGcgAcg11B.1.6270.00202
ORF1ab/nsp31739A1739AgcGgcT11B.1.6340.003425
ORF1ab/nsp31739A1739AgcGgcA11B.550.00295
ORF1ab/nsp31739A1739AgcGgcA11B.60.00091
ORF1ab/nsp31739A1739AgcGgcA11B.6.10.026316
ORF1ab/nsp31739A1739AgcGgcA11C.230.005814
ORF1ab/nsp31739A1739SGcGTcA11C.350.000774
ORF1ab/nsp31739A1739delGCG---11C.360.000911
ORF1ab/nsp31739A1739AgcGgcT11C.36.30.000567
ORF1ab/nsp31739A1739AgcGgcA11C.80.004464
ORF1ab/nsp31739A1739AgcGgcT11D.20.000075
ORF1ab/nsp31739A1739VgCggTg11D.20.000075
ORF1ab/nsp31739A1739AgcGgcT11D.50.004975
ORF1ab/nsp31739A1739AgcGgcT11N.60.007092
ORF1ab/nsp31739A1739AgcGgcC11P.1.100.000269
ORF1ab/nsp31739A1739TGcgAcg11P.1.140.000048
ORF1ab/nsp31739A1739VgCggTg11P.1.150.000232
ORF1ab/nsp31739A1739SGcgTcg11Q.20.000613
ORF1ab/nsp31739A1739delGCG---11Q.80.000165
ORF1ab/nsp31739A1739AgcGgcT11S.10.00495
ORF1ab/nsp31739A1739delGCG---11U.30.003861
ORF1ab/nsp31739A1739AgcGgcT11Y.10.012821