CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1736

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31736A1736VA2554VnonsyngCagTa1541591541570.9999877925-7927
ORF1ab/nsp31736A1736VA2554VnonsyngCAgTG15415910.000006486817925-7927
ORF1ab/nsp31736A1736VA2554VnonsyngCAgTC15415910.000006486817925-7927
ORF1ab/nsp31736A1736TA2554TnonsynGcaAca6015990.9966727925-7927
ORF1ab/nsp31736A1736TA2554TnonsynGcAAcG60110.001663897925-7927
ORF1ab/nsp31736A1736TA2554TnonsynGcAAcC60110.001663897925-7927
ORF1ab/nsp31736A1736SA2554SnonsynGcaTca27927917925-7927
ORF1ab/nsp31736A1736delA2554deldelGCA---11511517925-7927
ORF1ab/nsp31736A1736AA2554AsyngcAgcG115700.6086967925-7927
ORF1ab/nsp31736A1736AA2554AsyngcAgcC115290.2521747925-7927
ORF1ab/nsp31736A1736AA2554AsyngcAgcT115160.139137925-7927
ORF1ab/nsp31736A1736del1A2554del1delgcAgc-22170.7727277925-7927
ORF1ab/nsp31736A1736del1A2554del1delGca-ca2220.09090917925-7927
ORF1ab/nsp31736A1736del1A2554del1delGCATT-2220.09090917925-7927
ORF1ab/nsp31736A1736del1A2554del1delGcATc-2210.04545457925-7927
ORF1ab/nsp31736A1736EA2554EnonsyngCagAa111117925-7927
ORF1ab/nsp31736A1736PA2554PnonsynGcaCca870.8757925-7927
ORF1ab/nsp31736A1736PA2554PnonsynGcACcC810.1257925-7927
ORF1ab/nsp31736A1736IA2554InonsynGCaATa3317925-7927
ORF1ab/nsp31736A1736del2A2554del2delgCAg--210.57925-7927
ORF1ab/nsp31736A1736del2A2554del2delGCa--a210.57925-7927
ORF1ab/nsp31736A1736GA2554GnonsyngCagGa210.57925-7927
ORF1ab/nsp31736A1736GA2554GnonsyngCAgGT210.57925-7927
ORF1ab/nsp31736A1736LA2554LnonsynGCaTTa1117925-7927

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31736A1736VgCagTa154157154159All0.029484
ORF1ab/nsp31736A1736VgCAgTC1154159All0
ORF1ab/nsp31736A1736VgCAgTG1154159All0
ORF1ab/nsp31736A1736VgCagTa133178133179AY.440.810623
ORF1ab/nsp31736A1736VgCAgTC1133179AY.440.000006
ORF1ab/nsp31736A1736VgCagTa1009910099B.1.617.20.038027
ORF1ab/nsp31736A1736VgCagTa33863386B.1.177.570.951391
ORF1ab/nsp31736A1736VgCagTa14191419B.1.177.560.947263
ORF1ab/nsp31736A1736VgCagTa14071407B.1.1.70.00126
ORF1ab/nsp31736A1736VgCagTa607607AY.650.323561
ORF1ab/nsp31736A1736TGcaAca599601All0.000115
ORF1ab/nsp31736A1736TGcAAcC1601All0
ORF1ab/nsp31736A1736TGcAAcG1601All0
ORF1ab/nsp31736A1736VgCagTa491491AY.1030.003049
ORF1ab/nsp31736A1736VgCagTa482482AY.40.00075
ORF1ab/nsp31736A1736TGcaAca308308AY.420.012391
ORF1ab/nsp31736A1736SGcaTca279279All0.000053
ORF1ab/nsp31736A1736VgCagTa265265B.1.20.002333
ORF1ab/nsp31736A1736VgCagTa212212AY.430.000939
ORF1ab/nsp31736A1736VgCagTa183183AY.250.001101
ORF1ab/nsp31736A1736VgCagTa121121AY.1170.010227
ORF1ab/nsp31736A1736delGCA---115115All0.000022
ORF1ab/nsp31736A1736AgcAgcG70115All0.000013
ORF1ab/nsp31736A1736AgcAgcC29115All0.000006
ORF1ab/nsp31736A1736AgcAgcT16115All0.000003
ORF1ab/nsp31736A1736VgCagTa107107B.10.00098
ORF1ab/nsp31736A1736VgCagTa9999AY.390.002446
ORF1ab/nsp31736A1736SGcaTca8888B.1.1600.002745
ORF1ab/nsp31736A1736SGcaTca8686AY.1030.000534
ORF1ab/nsp31736A1736VgCagTa7676AY.98.10.003681
ORF1ab/nsp31736A1736VgCagTa7373AY.9.20.002681
ORF1ab/nsp31736A1736VgCagTa6666P.10.00104
ORF1ab/nsp31736A1736VgCagTa6464B.1.1.2740.323232
ORF1ab/nsp31736A1736VgCagTa5656AY.30.000557
ORF1ab/nsp31736A1736delGCA---5656B.1.1.70.00005
ORF1ab/nsp31736A1736VgCagTa5353B.1.1770.000698
ORF1ab/nsp31736A1736VgCagTa5252C.370.006035
ORF1ab/nsp31736A1736VgCagTa5050AY.50.001032
ORF1ab/nsp31736A1736VgCagTa4949AY.340.004751
ORF1ab/nsp31736A1736VgCagTa4848B.1.177.540.029109
ORF1ab/nsp31736A1736SGcaTca4646AY.30.000458
ORF1ab/nsp31736A1736TGcaAca4244B.1.1.70.000038
ORF1ab/nsp31736A1736TGcAAcG144B.1.1.70.000001
ORF1ab/nsp31736A1736TGcAAcC144B.1.1.70.000001
ORF1ab/nsp31736A1736VgCagTa4242AY.750.002353
ORF1ab/nsp31736A1736VgCagTa4242B.1.10.000762
ORF1ab/nsp31736A1736VgCagTa4242B.1.4290.000988
ORF1ab/nsp31736A1736TGcaAca4040AY.40.000062
ORF1ab/nsp31736A1736VgCagTa3838AY.450.004624
ORF1ab/nsp31736A1736VgCagTa3535AY.1020.000928
ORF1ab/nsp31736A1736VgCagTa3535AY.460.003643
ORF1ab/nsp31736A1736VgCagTa3535B.1.1.5190.00139
ORF1ab/nsp31736A1736VgCagTa3434AY.260.000963
ORF1ab/nsp31736A1736VgCagTa3232AY.1000.001472
ORF1ab/nsp31736A1736SGcaTca3030B.1.1.70.000027
ORF1ab/nsp31736A1736VgCagTa2929AY.470.000902
ORF1ab/nsp31736A1736VgCagTa2828AY.920.008044
ORF1ab/nsp31736A1736TGcaAca2828B.1.617.10.003611
ORF1ab/nsp31736A1736VgCagTa2727AY.1190.000953
ORF1ab/nsp31736A1736VgCagTa2727AY.4.20.000586
ORF1ab/nsp31736A1736TGcaAca2727B.1.617.20.000102
ORF1ab/nsp31736A1736VgCagTa2525AY.230.001744
ORF1ab/nsp31736A1736VgCagTa2525AY.640.014881
ORF1ab/nsp31736A1736VgCagTa2424AY.200.000933
ORF1ab/nsp31736A1736VgCagTa2424AY.90.001622
ORF1ab/nsp31736A1736VgCagTa2424AY.99.20.002212
ORF1ab/nsp31736A1736VgCagTa2424B.1.1600.000749
ORF1ab/nsp31736A1736del1gcAgc-1722All0.000003
ORF1ab/nsp31736A1736del1Gca-ca222All0
ORF1ab/nsp31736A1736del1GCATT-222All0
ORF1ab/nsp31736A1736del1GcATc-122All0
ORF1ab/nsp31736A1736VgCagTa2121AY.46.60.001516
ORF1ab/nsp31736A1736VgCagTa2121B.1.36.190.194444
ORF1ab/nsp31736A1736VgCagTa2020AY.710.009501
ORF1ab/nsp31736A1736TGcaAca2020B.1.20.000176
ORF1ab/nsp31736A1736VgCagTa1919AY.60.000781
ORF1ab/nsp31736A1736VgCagTa1818AY.540.001716
ORF1ab/nsp31736A1736VgCagTa1818B.1.177.190.025751
ORF1ab/nsp31736A1736VgCagTa1717AY.1140.003929
ORF1ab/nsp31736A1736VgCagTa1717AY.290.000268
ORF1ab/nsp31736A1736VgCagTa1717B.1.3510.000505
ORF1ab/nsp31736A1736VgCagTa1616B.1.5260.000376
ORF1ab/nsp31736A1736VgCagTa1616B.400.005829
ORF1ab/nsp31736A1736AgcAgcG1616P.10.000252
ORF1ab/nsp31736A1736VgCagTa1515B.1.5250.001697
ORF1ab/nsp31736A1736AgcAgcC1515B.60.013649
ORF1ab/nsp31736A1736VgCagTa1414AY.1180.000877
ORF1ab/nsp31736A1736VgCagTa1414AY.240.006034
ORF1ab/nsp31736A1736VgCagTa1414B.1.2210.000994
ORF1ab/nsp31736A1736TGcaAca1313AY.430.000058
ORF1ab/nsp31736A1736VgCagTa1313AY.910.009496
ORF1ab/nsp31736A1736VgCagTa1313AY.930.00355
ORF1ab/nsp31736A1736VgCagTa1313B.1.6210.001151
ORF1ab/nsp31736A1736TGcaAca1212AY.16.10.005639
ORF1ab/nsp31736A1736VgCagTa1212AY.75.10.002164
ORF1ab/nsp31736A1736VgCagTa1212B.1.5960.001046
ORF1ab/nsp31736A1736EgCagAa1111All0.000002
ORF1ab/nsp31736A1736VgCagTa1111AY.1210.001488
ORF1ab/nsp31736A1736VgCagTa1111AY.39.10.000436
ORF1ab/nsp31736A1736VgCagTa1111AY.420.000443
ORF1ab/nsp31736A1736VgCagTa1111AY.99.10.017081
ORF1ab/nsp31736A1736VgCagTa1111B.1.4270.000555
ORF1ab/nsp31736A1736VgCagTa1010AY.360.001482
ORF1ab/nsp31736A1736TGcaAca1010B.1.177.770.007262
ORF1ab/nsp31736A1736VgCagTa1010B.1.2400.002156
ORF1ab/nsp31736A1736TGcaAca1010B.1.4270.000505
ORF1ab/nsp31736A1736VgCagTa1010B.1.466.20.003912
ORF1ab/nsp31736A1736VgCagTa99AY.3.10.000767
ORF1ab/nsp31736A1736TGcaAca99B.10.000082
ORF1ab/nsp31736A1736VgCagTa99B.1.1.10.00294
ORF1ab/nsp31736A1736VgCagTa99B.1.1.500.00611
ORF1ab/nsp31736A1736PGcaCca78All0.000001
ORF1ab/nsp31736A1736PGcACcC18All0
ORF1ab/nsp31736A1736VgCagTa88AY.1200.000297
ORF1ab/nsp31736A1736VgCagTa88AY.130.001288
ORF1ab/nsp31736A1736AgcAgcG48AY.40.000006
ORF1ab/nsp31736A1736AgcAgcC38AY.40.000005
ORF1ab/nsp31736A1736AgcAgcT18AY.40.000002
ORF1ab/nsp31736A1736VgCagTa88AY.4.40.003273
ORF1ab/nsp31736A1736TGcaAca88AY.770.009019
ORF1ab/nsp31736A1736VgCagTa88B.1.160.70.016632
ORF1ab/nsp31736A1736VgCagTa78B.1.617.10.000903
ORF1ab/nsp31736A1736VgCAgTG18B.1.617.10.000129
ORF1ab/nsp31736A1736VgCagTa77AY.1130.000997
ORF1ab/nsp31736A1736VgCagTa77AY.270.000453
ORF1ab/nsp31736A1736VgCagTa77AY.7.20.003915
ORF1ab/nsp31736A1736VgCagTa77AY.980.000553
ORF1ab/nsp31736A1736AgcAgcG67B.1.1.70.000005
ORF1ab/nsp31736A1736AgcAgcT17B.1.1.70.000001
ORF1ab/nsp31736A1736VgCagTa77B.1.177.120.001062
ORF1ab/nsp31736A1736VgCagTa77B.1.416.10.010937
ORF1ab/nsp31736A1736AgcAgcG57B.1.617.20.000019
ORF1ab/nsp31736A1736AgcAgcT27B.1.617.20.000008
ORF1ab/nsp31736A1736AgcAgcC77B.6.60.006222
ORF1ab/nsp31736A1736VgCagTa77Q.10.000884
ORF1ab/nsp31736A1736VgCagTa66AY.330.000401
ORF1ab/nsp31736A1736AgcAgcT46AY.430.000018
ORF1ab/nsp31736A1736AgcAgcG26AY.430.000009
ORF1ab/nsp31736A1736VgCagTa66B0.000767
ORF1ab/nsp31736A1736VgCagTa66B.1.1.2220.001224
ORF1ab/nsp31736A1736VgCagTa66B.1.2320.003224
ORF1ab/nsp31736A1736VgCagTa66B.1.2430.000418
ORF1ab/nsp31736A1736VgCagTa66B.1.360.000875
ORF1ab/nsp31736A1736VgCagTa66B.1.36.290.003104
ORF1ab/nsp31736A1736VgCagTa66B.1.36.310.010508
ORF1ab/nsp31736A1736VgCagTa66B.1.3690.001711
ORF1ab/nsp31736A1736TGcaAca66B.1.4290.000141
ORF1ab/nsp31736A1736VgCagTa66B.30.004983
ORF1ab/nsp31736A1736VgCagTa66P.1.150.001394
ORF1ab/nsp31736A1736VgCagTa66R.10.00054
ORF1ab/nsp31736A1736VgCagTa55A.2.50.002495
ORF1ab/nsp31736A1736VgCagTa55AY.1160.001434
ORF1ab/nsp31736A1736AgcAgcG55AY.200.000194
ORF1ab/nsp31736A1736VgCagTa55AY.46.50.000992
ORF1ab/nsp31736A1736VgCagTa55B.1.1.2840.000537
ORF1ab/nsp31736A1736delGCA---55B.1.1770.000066
ORF1ab/nsp31736A1736VgCagTa55B.1.177.210.000382
ORF1ab/nsp31736A1736VgCagTa55B.1.177.80.003762
ORF1ab/nsp31736A1736VgCagTa55B.1.3110.001373
ORF1ab/nsp31736A1736VgCagTa55B.1.4000.002145
ORF1ab/nsp31736A1736SGcaTca55P.10.000079
ORF1ab/nsp31736A1736VgCagTa55P.1.20.00578
ORF1ab/nsp31736A1736SGcaTca44AY.100.00212
ORF1ab/nsp31736A1736VgCagTa44AY.1010.001962
ORF1ab/nsp31736A1736VgCagTa44AY.1050.002572
ORF1ab/nsp31736A1736VgCagTa44AY.350.000932
ORF1ab/nsp31736A1736delGCA---44AY.40.000006
ORF1ab/nsp31736A1736del1gcAgc-24AY.430.000009
ORF1ab/nsp31736A1736del1Gca-ca24AY.430.000009
ORF1ab/nsp31736A1736TGcaAca44AY.440.000024
ORF1ab/nsp31736A1736VgCagTa44AY.610.000419
ORF1ab/nsp31736A1736VgCagTa44AY.620.001743
ORF1ab/nsp31736A1736VgCagTa44B.1.1.2040.012158
ORF1ab/nsp31736A1736VgCagTa44B.1.1.2140.000222
ORF1ab/nsp31736A1736VgCagTa44B.1.1.3060.001754
ORF1ab/nsp31736A1736VgCagTa44B.1.177.730.002265
ORF1ab/nsp31736A1736VgCagTa44B.1.177.820.001909
ORF1ab/nsp31736A1736TGcaAca44B.1.2430.000278
ORF1ab/nsp31736A1736TGcaAca44B.1.3110.001098
ORF1ab/nsp31736A1736VgCagTa44B.1.36.180.001681
ORF1ab/nsp31736A1736VgCagTa44B.1.5750.001214
ORF1ab/nsp31736A1736delGCA---44B.1.617.20.000015
ORF1ab/nsp31736A1736VgCagTa44B.1.6280.001409
ORF1ab/nsp31736A1736VgCagTa44C.360.003643
ORF1ab/nsp31736A1736VgCagTa44C.36.30.002269
ORF1ab/nsp31736A1736VgCagTa44P.1.140.000191
ORF1ab/nsp31736A1736IGCaATa33All0.000001
ORF1ab/nsp31736A1736VgCagTa33AY.1070.001398
ORF1ab/nsp31736A1736VgCagTa33AY.1100.000338
ORF1ab/nsp31736A1736VgCagTa33AY.140.000264
ORF1ab/nsp31736A1736AgcAgcG33AY.30.00003
ORF1ab/nsp31736A1736AgcAgcG33AY.3.10.000256
ORF1ab/nsp31736A1736AgcAgcG33AY.39.10.000119
ORF1ab/nsp31736A1736delGCA---33AY.430.000013
ORF1ab/nsp31736A1736VgCagTa33AY.46.20.001906
ORF1ab/nsp31736A1736VgCagTa33AY.510.002727
ORF1ab/nsp31736A1736VgCagTa33AY.670.001393
ORF1ab/nsp31736A1736VgCagTa33AY.680.000821
ORF1ab/nsp31736A1736VgCagTa33AY.9.2.10.005929
ORF1ab/nsp31736A1736VgCagTa33AY.960.006224
ORF1ab/nsp31736A1736delGCA---33B.10.000027
ORF1ab/nsp31736A1736TGcaAca33B.1.1.280.000934
ORF1ab/nsp31736A1736VgCagTa33B.1.1.280.000934
ORF1ab/nsp31736A1736VgCagTa33B.1.1.2940.003797
ORF1ab/nsp31736A1736VgCagTa33B.1.1.3260.005282
ORF1ab/nsp31736A1736VgCagTa33B.1.1.3690.001339
ORF1ab/nsp31736A1736TGcaAca33B.1.1.5190.000119
ORF1ab/nsp31736A1736VgCagTa33B.1.110.30.002155
ORF1ab/nsp31736A1736AgcAgcG23B.1.20.000018
ORF1ab/nsp31736A1736AgcAgcT13B.1.20.000009
ORF1ab/nsp31736A1736VgCagTa33B.1.2340.000396
ORF1ab/nsp31736A1736TGcaAca33B.1.2400.000647
ORF1ab/nsp31736A1736AgcAgcG33B.1.2400.000647
ORF1ab/nsp31736A1736VgCagTa33B.1.2650.003812
ORF1ab/nsp31736A1736VgCagTa33B.1.2680.03125
ORF1ab/nsp31736A1736AgcAgcG33B.1.3510.000089
ORF1ab/nsp31736A1736VgCagTa33B.1.36.10.003421
ORF1ab/nsp31736A1736VgCagTa33B.1.5760.00272
ORF1ab/nsp31736A1736VgCagTa33B.60.00273
ORF1ab/nsp31736A1736VgCagTa33P.1.160.001122
ORF1ab/nsp31736A1736AgcAgcG33P.1.170.000485
ORF1ab/nsp31736A1736TGcaAca33P.20.00056
ORF1ab/nsp31736A1736SGcaTca220.111111
ORF1ab/nsp31736A1736EgCagAa220.111111
ORF1ab/nsp31736A1736PGcaCca220.111111
ORF1ab/nsp31736A1736del1GCATT-220.111111
ORF1ab/nsp31736A1736VgCagTa22A0.000774
ORF1ab/nsp31736A1736VgCagTa22AE.80.000978
ORF1ab/nsp31736A1736GgCAgGT12All0
ORF1ab/nsp31736A1736del2gCAg--12All0
ORF1ab/nsp31736A1736GgCagGa12All0
ORF1ab/nsp31736A1736del2GCa--a12All0
ORF1ab/nsp31736A1736del1gcAgc-22AU.10.002532
ORF1ab/nsp31736A1736VgCagTa22AY.100.00106
ORF1ab/nsp31736A1736AgcAgcT22AY.1020.000053
ORF1ab/nsp31736A1736VgCagTa22AY.116.10.000623
ORF1ab/nsp31736A1736TGcaAca22AY.1190.000071
ORF1ab/nsp31736A1736VgCagTa22AY.120.000632
ORF1ab/nsp31736A1736AgcAgcG22AY.230.000139
ORF1ab/nsp31736A1736VgCagTa22AY.23.10.000835
ORF1ab/nsp31736A1736SGcaTca22AY.250.000012
ORF1ab/nsp31736A1736TGcaAca22AY.30.00002
ORF1ab/nsp31736A1736VgCagTa22AY.320.001065
ORF1ab/nsp31736A1736delGCA---22AY.4.50.000215
ORF1ab/nsp31736A1736VgCagTa22AY.4.50.000215
ORF1ab/nsp31736A1736del1gcAgc-22AY.440.000012
ORF1ab/nsp31736A1736IGCaATa22AY.440.000012
ORF1ab/nsp31736A1736delGCA---22AY.46.20.001271
ORF1ab/nsp31736A1736TGcaAca22AY.50.000041
ORF1ab/nsp31736A1736VgCagTa22AY.5.40.000553
ORF1ab/nsp31736A1736VgCagTa22AY.570.001312
ORF1ab/nsp31736A1736VgCagTa22AY.590.001059
ORF1ab/nsp31736A1736TGcaAca22AY.650.001066
ORF1ab/nsp31736A1736VgCagTa22AY.700.000417
ORF1ab/nsp31736A1736VgCagTa22AY.840.000875
ORF1ab/nsp31736A1736VgCagTa22AY.860.00166
ORF1ab/nsp31736A1736VgCagTa22AY.900.001369
ORF1ab/nsp31736A1736AgcAgcT12B.1.10.000018
ORF1ab/nsp31736A1736AgcAgcC12B.1.10.000018
ORF1ab/nsp31736A1736VgCagTa22B.1.1.1410.004024
ORF1ab/nsp31736A1736VgCagTa22B.1.1.1760.000879
ORF1ab/nsp31736A1736VgCagTa22B.1.1.2200.003717
ORF1ab/nsp31736A1736delGCA---22B.1.1.2360.013793
ORF1ab/nsp31736A1736VgCagTa22B.1.1.250.001137
ORF1ab/nsp31736A1736VgCagTa22B.1.1.3110.000716
ORF1ab/nsp31736A1736VgCagTa22B.1.1.3170.000823
ORF1ab/nsp31736A1736TGcaAca22B.1.1.4160.00181
ORF1ab/nsp31736A1736VgCagTa22B.1.1.5230.003125
ORF1ab/nsp31736A1736VgCagTa22B.1.1.630.000772
ORF1ab/nsp31736A1736PGcaCca12B.1.1.70.000001
ORF1ab/nsp31736A1736PGcACcC12B.1.1.70.000001
ORF1ab/nsp31736A1736TGcaAca22B.1.1770.000026
ORF1ab/nsp31736A1736VgCagTa22B.1.177.160.001329
ORF1ab/nsp31736A1736VgCagTa22B.1.177.200.003035
ORF1ab/nsp31736A1736VgCagTa22B.1.177.600.000437
ORF1ab/nsp31736A1736VgCagTa22B.1.177.870.001456
ORF1ab/nsp31736A1736VgCagTa22B.1.2060.001631
ORF1ab/nsp31736A1736VgCagTa22B.1.214.10.04
ORF1ab/nsp31736A1736TGcaAca22B.1.2340.000264
ORF1ab/nsp31736A1736TGcaAca22B.1.3510.000059
ORF1ab/nsp31736A1736VgCagTa22B.1.351.20.000605
ORF1ab/nsp31736A1736AgcAgcG12B.1.360.000146
ORF1ab/nsp31736A1736AgcAgcT12B.1.360.000146
ORF1ab/nsp31736A1736delGCA---22B.1.36.170.000988
ORF1ab/nsp31736A1736VgCagTa22B.1.4160.002538
ORF1ab/nsp31736A1736VgCagTa22B.1.438.10.000215
ORF1ab/nsp31736A1736TGcaAca22B.1.5610.000794
ORF1ab/nsp31736A1736VgCagTa22B.1.5650.001621
ORF1ab/nsp31736A1736VgCagTa22B.1.5950.000522
ORF1ab/nsp31736A1736del2GCa--a12B.1.617.20.000004
ORF1ab/nsp31736A1736del2gCAg--12B.1.617.20.000004
ORF1ab/nsp31736A1736VgCagTa22L.30.007092
ORF1ab/nsp31736A1736VgCagTa22N.60.014184
ORF1ab/nsp31736A1736VgCagTa22P.1.100.000539
ORF1ab/nsp31736A1736VgCagTa22P.1.170.000324
ORF1ab/nsp31736A1736delGCA---11A0.000387
ORF1ab/nsp31736A1736VgCagTa11A.23.10.000704
ORF1ab/nsp31736A1736VgCagTa11AD.20.000219
ORF1ab/nsp31736A1736LGCaTTa11All0
ORF1ab/nsp31736A1736VgCagTa11AM.20.111111
ORF1ab/nsp31736A1736VgCagTa11AY.10.000396
ORF1ab/nsp31736A1736TGcaAca11AY.1020.000027
ORF1ab/nsp31736A1736TGcaAca11AY.1030.000006
ORF1ab/nsp31736A1736del1gcAgc-11AY.1030.000006
ORF1ab/nsp31736A1736AgcAgcC11AY.1030.000006
ORF1ab/nsp31736A1736VgCagTa11AY.1060.000335
ORF1ab/nsp31736A1736VgCagTa11AY.1110.000183
ORF1ab/nsp31736A1736delGCA---11AY.1110.000183
ORF1ab/nsp31736A1736TGcaAca11AY.1140.000231
ORF1ab/nsp31736A1736VgCagTa11AY.1150.005208
ORF1ab/nsp31736A1736AgcAgcG11AY.1200.000037
ORF1ab/nsp31736A1736delGCA---11AY.1200.000037
ORF1ab/nsp31736A1736VgCagTa11AY.120.10.000321
ORF1ab/nsp31736A1736VgCagTa11AY.160.00038
ORF1ab/nsp31736A1736delGCA---11AY.190.00114
ORF1ab/nsp31736A1736SGcaTca11AY.200.000039
ORF1ab/nsp31736A1736SGcaTca11AY.230.00007
ORF1ab/nsp31736A1736delGCA---11AY.250.000006
ORF1ab/nsp31736A1736SGcaTca11AY.260.000028
ORF1ab/nsp31736A1736AgcAgcT11AY.290.000016
ORF1ab/nsp31736A1736delGCA---11AY.330.000067
ORF1ab/nsp31736A1736AgcAgcG11AY.330.000067
ORF1ab/nsp31736A1736VgCagTa11AY.34.10.00051
ORF1ab/nsp31736A1736VgCagTa11AY.380.000499
ORF1ab/nsp31736A1736del1gcAgc-11AY.390.000025
ORF1ab/nsp31736A1736VgCagTa11AY.39.20.001541
ORF1ab/nsp31736A1736del1gcAgc-11AY.40.000002
ORF1ab/nsp31736A1736SGcaTca11AY.4.50.000107
ORF1ab/nsp31736A1736VgCagTa11AY.400.000964
ORF1ab/nsp31736A1736AgcAgcT11AY.420.00004
ORF1ab/nsp31736A1736delGCA---11AY.440.000006
ORF1ab/nsp31736A1736SGcaTca11AY.450.000122
ORF1ab/nsp31736A1736VgCagTa11AY.46.30.000934
ORF1ab/nsp31736A1736VgCagTa11AY.46.40.000165
ORF1ab/nsp31736A1736VgCagTa11AY.480.000465
ORF1ab/nsp31736A1736TGcaAca11AY.480.000465
ORF1ab/nsp31736A1736delGCA---11AY.50.000021
ORF1ab/nsp31736A1736VgCagTa11AY.5.30.000337
ORF1ab/nsp31736A1736VgCagTa11AY.520.000814
ORF1ab/nsp31736A1736VgCagTa11AY.560.001605
ORF1ab/nsp31736A1736delGCA---11AY.60.000041
ORF1ab/nsp31736A1736VgCagTa11AY.600.000938
ORF1ab/nsp31736A1736AgcAgcG11AY.610.000105
ORF1ab/nsp31736A1736SGcaTca11AY.670.000464
ORF1ab/nsp31736A1736PGcaCca11AY.690.000187
ORF1ab/nsp31736A1736VgCagTa11AY.70.000196
ORF1ab/nsp31736A1736VgCagTa11AY.730.000665
ORF1ab/nsp31736A1736VgCagTa11AY.740.000116
ORF1ab/nsp31736A1736TGcaAca11AY.740.000116
ORF1ab/nsp31736A1736delGCA---11AY.750.000056
ORF1ab/nsp31736A1736VgCagTa11AY.770.001127
ORF1ab/nsp31736A1736VgCagTa11AY.790.001211
ORF1ab/nsp31736A1736delGCA---11AY.840.000437
ORF1ab/nsp31736A1736AgcAgcG11AY.840.000437
ORF1ab/nsp31736A1736VgCagTa11AY.850.000427
ORF1ab/nsp31736A1736VgCagTa11AY.880.000884
ORF1ab/nsp31736A1736SGcaTca11AY.9.10.000084
ORF1ab/nsp31736A1736delGCA---11AY.9.20.000037
ORF1ab/nsp31736A1736VgCagTa11AY.950.000761
ORF1ab/nsp31736A1736delGCA---11AY.990.001049
ORF1ab/nsp31736A1736delGCA---11AY.99.10.001553
ORF1ab/nsp31736A1736del1GcATc-11B0.000128
ORF1ab/nsp31736A1736TGcaAca11B0.000128
ORF1ab/nsp31736A1736PGcaCca11B.10.000009
ORF1ab/nsp31736A1736del1gcAgc-11B.10.000009
ORF1ab/nsp31736A1736EgCagAa11B.10.000009
ORF1ab/nsp31736A1736AgcAgcT11B.10.000009
ORF1ab/nsp31736A1736del1gcAgc-11B.1.10.000018
ORF1ab/nsp31736A1736delGCA---11B.1.10.000018
ORF1ab/nsp31736A1736TGcaAca11B.1.10.000018
ORF1ab/nsp31736A1736VgCagTa11B.1.1.1890.001513
ORF1ab/nsp31736A1736AgcAgcC11B.1.1.1890.001513
ORF1ab/nsp31736A1736VgCagTa11B.1.1.2070.001182
ORF1ab/nsp31736A1736VgCagTa11B.1.1.2260.005814
ORF1ab/nsp31736A1736TGcaAca11B.1.1.2280.003049
ORF1ab/nsp31736A1736TGcaAca11B.1.1.3170.000412
ORF1ab/nsp31736A1736VgCagTa11B.1.1.330.000421
ORF1ab/nsp31736A1736AgcAgcG11B.1.1.370.000193
ORF1ab/nsp31736A1736SGcaTca11B.1.1.3760.005952
ORF1ab/nsp31736A1736VgCagTa11B.1.1.3850.004464
ORF1ab/nsp31736A1736VgCagTa11B.1.1.390.00051
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4130.006897
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4160.000905
ORF1ab/nsp31736A1736TGcaAca11B.1.1.4320.001266
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4340.000349
ORF1ab/nsp31736A1736VgCagTa11B.1.1.4480.002033
ORF1ab/nsp31736A1736delGCA---11B.1.1.460.004367
ORF1ab/nsp31736A1736VgCagTa11B.1.1.5120.028571
ORF1ab/nsp31736A1736TGcaAca11B.1.1.5170.006803
ORF1ab/nsp31736A1736VgCagTa11B.1.1.5260.003546
ORF1ab/nsp31736A1736GgCAgGT11B.1.1.70.000001
ORF1ab/nsp31736A1736EgCagAa11B.1.1.70.000001
ORF1ab/nsp31736A1736LGCaTTa11B.1.1.70.000001
ORF1ab/nsp31736A1736TGcaAca11B.1.110.30.000718
ORF1ab/nsp31736A1736VgCagTa11B.1.1110.001175
ORF1ab/nsp31736A1736EgCagAa11B.1.1570.002985
ORF1ab/nsp31736A1736VgCagTa11B.1.160.110.005714
ORF1ab/nsp31736A1736del1gcAgc-11B.1.160.140.002119
ORF1ab/nsp31736A1736VgCagTa11B.1.160.160.000929
ORF1ab/nsp31736A1736del1gcAgc-11B.1.160.200.008929
ORF1ab/nsp31736A1736delGCA---11B.1.160.70.002079
ORF1ab/nsp31736A1736SGcaTca11B.1.1770.000013
ORF1ab/nsp31736A1736del1gcAgc-11B.1.1770.000013
ORF1ab/nsp31736A1736VgCagTa11B.1.177.110.001698
ORF1ab/nsp31736A1736VgCagTa11B.1.177.150.000631
ORF1ab/nsp31736A1736delGCA---11B.1.177.160.000664
ORF1ab/nsp31736A1736VgCagTa11B.1.177.180.00116
ORF1ab/nsp31736A1736delGCA---11B.1.177.210.000076
ORF1ab/nsp31736A1736VgCagTa11B.1.177.240.001295
ORF1ab/nsp31736A1736VgCagTa11B.1.177.300.002513
ORF1ab/nsp31736A1736VgCagTa11B.1.177.40.000211
ORF1ab/nsp31736A1736delGCA---11B.1.177.40.000211
ORF1ab/nsp31736A1736VgCagTa11B.1.177.420.000894
ORF1ab/nsp31736A1736AgcAgcG11B.1.177.440.000519
ORF1ab/nsp31736A1736VgCagTa11B.1.177.490.037037
ORF1ab/nsp31736A1736delGCA---11B.1.177.540.000606
ORF1ab/nsp31736A1736VgCagTa11B.1.177.550.002331
ORF1ab/nsp31736A1736delGCA---11B.1.177.570.000281
ORF1ab/nsp31736A1736VgCagTa11B.1.177.580.001332
ORF1ab/nsp31736A1736delGCA---11B.1.177.60.000977
ORF1ab/nsp31736A1736TGcaAca11B.1.177.600.000218
ORF1ab/nsp31736A1736delGCA---11B.1.177.690.001484
ORF1ab/nsp31736A1736VgCagTa11B.1.177.70.000165
ORF1ab/nsp31736A1736delGCA---11B.1.177.70.000165
ORF1ab/nsp31736A1736VgCagTa11B.1.177.760.002494
ORF1ab/nsp31736A1736delGCA---11B.1.177.830.001481
ORF1ab/nsp31736A1736VgCagTa11B.1.177.860.000183
ORF1ab/nsp31736A1736VgCagTa11B.1.1990.004132
ORF1ab/nsp31736A1736del1gcAgc-11B.1.20.000009
ORF1ab/nsp31736A1736PGcaCca11B.1.20.000009
ORF1ab/nsp31736A1736AgcAgcG11B.1.2360.002053
ORF1ab/nsp31736A1736VgCagTa11B.1.2410.000812
ORF1ab/nsp31736A1736delGCA---11B.1.2580.000067
ORF1ab/nsp31736A1736VgCagTa11B.1.2580.000067
ORF1ab/nsp31736A1736EgCagAa11B.1.2580.000067
ORF1ab/nsp31736A1736delGCA---11B.1.258.110.000396
ORF1ab/nsp31736A1736VgCagTa11B.1.2980.002114
ORF1ab/nsp31736A1736TGcaAca11B.1.3230.020833
ORF1ab/nsp31736A1736VgCagTa11B.1.3350.010309
ORF1ab/nsp31736A1736VgCagTa11B.1.3550.011111
ORF1ab/nsp31736A1736VgCagTa11B.1.3560.001727
ORF1ab/nsp31736A1736VgCagTa11B.1.36.170.000494
ORF1ab/nsp31736A1736delGCA---11B.1.36.180.00042
ORF1ab/nsp31736A1736VgCagTa11B.1.36.360.000602
ORF1ab/nsp31736A1736VgCagTa11B.1.36.390.002217
ORF1ab/nsp31736A1736TGcaAca11B.1.3610.001289
ORF1ab/nsp31736A1736SGcaTca11B.1.3690.000285
ORF1ab/nsp31736A1736AgcAgcG11B.1.3960.000706
ORF1ab/nsp31736A1736EgCagAa11B.1.3960.000706
ORF1ab/nsp31736A1736SGcaTca11B.1.3960.000706
ORF1ab/nsp31736A1736delGCA---11B.1.4090.000781
ORF1ab/nsp31736A1736VgCagTa11B.1.4220.000812
ORF1ab/nsp31736A1736VgCagTa11B.1.4260.001009
ORF1ab/nsp31736A1736EgCagAa11B.1.4270.00005
ORF1ab/nsp31736A1736del1gcAgc-11B.1.466.20.000391
ORF1ab/nsp31736A1736VgCagTa11B.1.4690.00361
ORF1ab/nsp31736A1736TGcaAca11B.1.4990.00105
ORF1ab/nsp31736A1736EgCagAa11B.1.5090.000866
ORF1ab/nsp31736A1736TGcaAca11B.1.5260.000024
ORF1ab/nsp31736A1736VgCagTa11B.1.5400.009709
ORF1ab/nsp31736A1736VgCagTa11B.1.5640.000426
ORF1ab/nsp31736A1736SGcaTca11B.1.5690.014493
ORF1ab/nsp31736A1736TGcaAca11B.1.5770.000687
ORF1ab/nsp31736A1736VgCagTa11B.1.5800.004065
ORF1ab/nsp31736A1736VgCagTa11B.1.5820.000491
ORF1ab/nsp31736A1736VgCagTa11B.1.5890.007576
ORF1ab/nsp31736A1736TGcaAca11B.1.5950.000261
ORF1ab/nsp31736A1736AgcAgcC11B.1.5960.000087
ORF1ab/nsp31736A1736EgCagAa11B.1.6090.000479
ORF1ab/nsp31736A1736SGcaTca11B.1.617.20.000004
ORF1ab/nsp31736A1736IGCaATa11B.1.617.20.000004
ORF1ab/nsp31736A1736del1gcAgc-11B.1.617.20.000004
ORF1ab/nsp31736A1736GgCagGa11B.1.617.20.000004
ORF1ab/nsp31736A1736delGCA---11B.1.617.30.002985
ORF1ab/nsp31736A1736SGcaTca11B.1.6200.000946
ORF1ab/nsp31736A1736TGcaAca11B.1.6230.000536
ORF1ab/nsp31736A1736TGcaAca11B.1.6280.000352
ORF1ab/nsp31736A1736VgCagTa11B.1.6370.000073
ORF1ab/nsp31736A1736EgCagAa11B.1.940.027027
ORF1ab/nsp31736A1736VgCagTa11B.1.970.025641
ORF1ab/nsp31736A1736TGcaAca11B.60.00091
ORF1ab/nsp31736A1736VgCagTa11B.6.50.076923
ORF1ab/nsp31736A1736TGcaAca11C.370.000116
ORF1ab/nsp31736A1736VgCagTa11C.37.10.002618
ORF1ab/nsp31736A1736VgCagTa11C.390.018868
ORF1ab/nsp31736A1736VgCagTa11D.20.000075
ORF1ab/nsp31736A1736SGcaTca11D.20.000075
ORF1ab/nsp31736A1736VgCagTa11P.1.120.000484
ORF1ab/nsp31736A1736PGcaCca11P.1.160.000374
ORF1ab/nsp31736A1736AgcAgcG11P.20.000187
ORF1ab/nsp31736A1736VgCagTa11Q.70.001111
ORF1ab/nsp31736A1736SGcaTca11Q.80.000165
ORF1ab/nsp31736A1736TGcaAca11R.10.00009
ORF1ab/nsp31736A1736delGCA---11U.30.003861