CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1736 | A1736V | A2554V | nonsyn | gCa | gTa | 154159 | 154157 | 0.999987 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736V | A2554V | nonsyn | gCA | gTG | 154159 | 1 | 0.00000648681 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736V | A2554V | nonsyn | gCA | gTC | 154159 | 1 | 0.00000648681 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736T | A2554T | nonsyn | Gca | Aca | 601 | 599 | 0.996672 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736T | A2554T | nonsyn | GcA | AcG | 601 | 1 | 0.00166389 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736T | A2554T | nonsyn | GcA | AcC | 601 | 1 | 0.00166389 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736S | A2554S | nonsyn | Gca | Tca | 279 | 279 | 1 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del | A2554del | del | GCA | --- | 115 | 115 | 1 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736A | A2554A | syn | gcA | gcG | 115 | 70 | 0.608696 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736A | A2554A | syn | gcA | gcC | 115 | 29 | 0.252174 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736A | A2554A | syn | gcA | gcT | 115 | 16 | 0.13913 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del1 | A2554del1 | del | gcA | gc- | 22 | 17 | 0.772727 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del1 | A2554del1 | del | Gca | -ca | 22 | 2 | 0.0909091 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del1 | A2554del1 | del | GCA | TT- | 22 | 2 | 0.0909091 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del1 | A2554del1 | del | GcA | Tc- | 22 | 1 | 0.0454545 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736E | A2554E | nonsyn | gCa | gAa | 11 | 11 | 1 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736P | A2554P | nonsyn | Gca | Cca | 8 | 7 | 0.875 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736P | A2554P | nonsyn | GcA | CcC | 8 | 1 | 0.125 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736I | A2554I | nonsyn | GCa | ATa | 3 | 3 | 1 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del2 | A2554del2 | del | gCA | g-- | 2 | 1 | 0.5 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736del2 | A2554del2 | del | GCa | --a | 2 | 1 | 0.5 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736G | A2554G | nonsyn | gCa | gGa | 2 | 1 | 0.5 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736G | A2554G | nonsyn | gCA | gGT | 2 | 1 | 0.5 | 7925-7927 |
ORF1ab/nsp3 | 1736 | A1736L | A2554L | nonsyn | GCa | TTa | 1 | 1 | 1 | 7925-7927 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 154157 | 154159 | All | 0.029484 |
ORF1ab/nsp3 | 1736 | A1736V | gCA | gTC | 1 | 154159 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736V | gCA | gTG | 1 | 154159 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 133178 | 133179 | AY.44 | 0.810623 |
ORF1ab/nsp3 | 1736 | A1736V | gCA | gTC | 1 | 133179 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 10099 | 10099 | B.1.617.2 | 0.038027 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3386 | 3386 | B.1.177.57 | 0.951391 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1419 | 1419 | B.1.177.56 | 0.947263 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1407 | 1407 | B.1.1.7 | 0.00126 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 607 | 607 | AY.65 | 0.323561 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 599 | 601 | All | 0.000115 |
ORF1ab/nsp3 | 1736 | A1736T | GcA | AcC | 1 | 601 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736T | GcA | AcG | 1 | 601 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 491 | 491 | AY.103 | 0.003049 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 482 | 482 | AY.4 | 0.00075 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 308 | 308 | AY.42 | 0.012391 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 279 | 279 | All | 0.000053 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 265 | 265 | B.1.2 | 0.002333 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 212 | 212 | AY.43 | 0.000939 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 183 | 183 | AY.25 | 0.001101 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 121 | 121 | AY.117 | 0.010227 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 115 | 115 | All | 0.000022 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 70 | 115 | All | 0.000013 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 29 | 115 | All | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 16 | 115 | All | 0.000003 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 107 | 107 | B.1 | 0.00098 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 99 | 99 | AY.39 | 0.002446 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 88 | 88 | B.1.160 | 0.002745 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 86 | 86 | AY.103 | 0.000534 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 76 | 76 | AY.98.1 | 0.003681 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 73 | 73 | AY.9.2 | 0.002681 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 66 | 66 | P.1 | 0.00104 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 64 | 64 | B.1.1.274 | 0.323232 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 56 | 56 | AY.3 | 0.000557 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 56 | 56 | B.1.1.7 | 0.00005 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 53 | 53 | B.1.177 | 0.000698 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 52 | 52 | C.37 | 0.006035 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 50 | 50 | AY.5 | 0.001032 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 49 | 49 | AY.34 | 0.004751 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 48 | 48 | B.1.177.54 | 0.029109 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 46 | 46 | AY.3 | 0.000458 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 42 | 44 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 1736 | A1736T | GcA | AcG | 1 | 44 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736T | GcA | AcC | 1 | 44 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 42 | 42 | AY.75 | 0.002353 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 42 | 42 | B.1.1 | 0.000762 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 42 | 42 | B.1.429 | 0.000988 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 38 | 38 | AY.45 | 0.004624 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 35 | 35 | AY.102 | 0.000928 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 35 | 35 | AY.46 | 0.003643 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 35 | 35 | B.1.1.519 | 0.00139 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 34 | 34 | AY.26 | 0.000963 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 32 | 32 | AY.100 | 0.001472 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 29 | 29 | AY.47 | 0.000902 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 28 | 28 | AY.92 | 0.008044 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 28 | 28 | B.1.617.1 | 0.003611 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 27 | 27 | AY.119 | 0.000953 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 27 | 27 | AY.4.2 | 0.000586 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 25 | 25 | AY.23 | 0.001744 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 25 | 25 | AY.64 | 0.014881 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 24 | 24 | AY.20 | 0.000933 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 24 | 24 | AY.9 | 0.001622 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 24 | 24 | AY.99.2 | 0.002212 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 17 | 22 | All | 0.000003 |
ORF1ab/nsp3 | 1736 | A1736del1 | Gca | -ca | 2 | 22 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736del1 | GCA | TT- | 2 | 22 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736del1 | GcA | Tc- | 1 | 22 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 21 | 21 | AY.46.6 | 0.001516 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 21 | 21 | B.1.36.19 | 0.194444 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 20 | 20 | AY.71 | 0.009501 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 19 | 19 | AY.6 | 0.000781 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 18 | 18 | AY.54 | 0.001716 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 18 | 18 | B.1.177.19 | 0.025751 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 17 | 17 | AY.114 | 0.003929 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 16 | 16 | B.40 | 0.005829 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 15 | 15 | B.1.525 | 0.001697 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 15 | 15 | B.6 | 0.013649 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 14 | 14 | AY.24 | 0.006034 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 13 | 13 | AY.91 | 0.009496 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 13 | 13 | AY.93 | 0.00355 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 12 | 12 | AY.16.1 | 0.005639 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 12 | 12 | AY.75.1 | 0.002164 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 11 | 11 | AY.99.1 | 0.017081 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 10 | 10 | AY.36 | 0.001482 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 10 | 10 | B.1.177.77 | 0.007262 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 10 | 10 | B.1.240 | 0.002156 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 10 | 10 | B.1.466.2 | 0.003912 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736P | GcA | CcC | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 4 | 8 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 3 | 8 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 8 | 8 | AY.4.4 | 0.003273 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 8 | 8 | AY.77 | 0.009019 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 8 | 8 | B.1.160.7 | 0.016632 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 8 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 1736 | A1736V | gCA | gTG | 1 | 8 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | AY.7.2 | 0.003915 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 6 | 7 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 7 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | B.1.416.1 | 0.010937 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 5 | 7 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 2 | 7 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 7 | 7 | B.6.6 | 0.006222 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 4 | 6 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 2 | 6 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.232 | 0.003224 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.36.31 | 0.010508 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | B.3 | 0.004983 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 2 | 4 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736del1 | Gca | -ca | 2 | 4 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.1.204 | 0.012158 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1736 | A1736I | GCa | ATa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.9.2.1 | 0.005929 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.268 | 0.03125 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1736 | A1736del1 | GCA | TT- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 1736 | A1736G | gCA | gGT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736del2 | gCA | g-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736G | gCa | gGa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736del2 | GCa | --a | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 2 | 2 | AU.1 | 0.002532 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1736 | A1736I | GCa | ATa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736P | GcA | CcC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.214.1 | 0.04 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1736 | A1736del2 | GCa | --a | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1736 | A1736del2 | gCA | g-- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1736 | A1736L | GCa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AM.2 | 0.111111 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1736 | A1736del1 | GcA | Tc- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1736 | A1736G | gCA | gGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736L | GCa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.49 | 0.037037 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1736 | A1736I | GCa | ATa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1736 | A1736del1 | gcA | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1736 | A1736G | gCa | gGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1736 | A1736E | gCa | gAa | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.1.97 | 0.025641 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | B.6.5 | 0.076923 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1736 | A1736P | Gca | Cca | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1736 | A1736A | gcA | gcG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1736 | A1736V | gCa | gTa | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1736 | A1736S | Gca | Tca | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1736 | A1736T | Gca | Aca | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1736 | A1736del | GCA | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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